Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/9055d4b0da3d2fb2a1c6cf662c7616/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/7a10d7848c27f88c23f21f53edff1c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/7a10d7848c27f88c23f21f53edff1c/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/5fbc51a805066aeb16dbc3810c27aa/GM24385_0001_RNA_0001_23H5VFLT4_s16.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/778a96368c2b43fc71599e00d4c271/GM24385_0001_RNA_0001_23H5VFLT4_s16.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 260374465
[W::hts_idx_load3] The index file is older than the data file: GM24385_0001_RNA_0001_23H5VFLT4_s16.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	260374465
Known Splicing Events:	257292745
Partial Novel Splicing Events:	1866496
Novel Splicing Events:	1119737
Filtered Splicing Events:	95487

Total splicing  Junctions:	437195
Known Splicing Junctions:	231446
Partial Novel Splicing Junctions:	123093
Novel Splicing Junctions:	82656

===================================================================
Create BED file ...
Create Interact file ...