.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:SAMTOOLS_VIEW_ALIGNMENT_CRAM (tih_rna_sample_00090_23H5VFLT4_s32)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/ce9dc066e7fc3a71c1bc30ceb56679/.command.log
Size: 829 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:SAMTOOLS_VIEW_ALIGNMENT_CRAM (tih_rna_sample_00090_23H5VFLT4_s32)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/038f07b772c0eb1b53f89edbec8dfd/tih_rna_sample_00090_23H5VFLT4_s32.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/ce9dc066e7fc3a71c1bc30ceb56679/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/ce9dc066e7fc3a71c1bc30ceb56679/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/77bc9fbe086b5f96aead23d671d97b/tih_rna_sample_00090_23H5VFLT4_s32.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory