Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-5b456d70-fab3-4fcc-916c-bc437f411fba/5f/4d32fc1f4ec7fe5ef236279e51ead4/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/9572409d25efdc62a128e1a5af714c/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/32db3ef66d5686d240f32e97fa96c8/tih_rna_sample_00087_23H5VFLT4_s17.arriba.fusions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/edb22cf8fbe0eb5abb306ad1e3ac97/tih_rna_sample_00087_23H5VFLT4_s17.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/9572409d25efdc62a128e1a5af714c/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
TLK2--AC240565.1
starfusion
COL1A1--SLC45A4
starfusion
AC026341.1--GAP43
starfusion
arriba
TLK2P1--AC110079.1
starfusion
STX16--NPEPL1
starfusion
arriba
GOLGA6L10--GOLGA2P6
starfusion
AC138409.2--NAIP
starfusion
TVP23C--CDRT4
starfusion
arriba
C1QTNF7-AS1--LINC00504
starfusion
AP006294.2--ENPP7P3
starfusion
AP006294.2--LINC00665
starfusion
AC004923.1--AC127526.2
starfusion
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA10
arriba
THRAP3P2--SLCO3A1
arriba
SLCO3A1--SLCO3A1
arriba
UPK1B--IGSF11
arriba
B4GALT4--IGSF11
arriba
AC092807.3--DDAH1
arriba
AC079781.4--ASNS
arriba
STON1--GTF2A1L
arriba
AC090572.2--CNBD1
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHA13
arriba
SFRP4--EPDR1
arriba
CCDC169--SOHLH2
arriba
GTF2A1L--STON1-GTF2A1L
arriba
PCDHA6--PCDHA13
arriba
PCDHA6--PCDHAC1
arriba
PCDHA6--PCDHAC2
arriba
AL512590.2--CCDC180
arriba
MARVELD2--OCLN
arriba
RPS27P14--OCLN
arriba
0%| | 0/42 [00:00<?, ?it/s]
Processing TLK2--AC240565.1: 0%| | 0/42 [00:00<?, ?it/s]
Processing TLK2--AC240565.1: 2%|▏ | 1/42 [00:00<00:04, 9.25it/s]
Processing COL1A1--SLC45A4: 2%|▏ | 1/42 [00:00<00:04, 9.25it/s]
Processing COL1A1--SLC45A4: 5%|▍ | 2/42 [00:00<00:04, 9.47it/s]
Processing AC026341.1--GAP43: 5%|▍ | 2/42 [00:00<00:04, 9.47it/s]
Processing AC026341.1--GAP43: 7%|▋ | 3/42 [00:00<00:04, 9.55it/s]
Processing TLK2P1--AC110079.1: 7%|▋ | 3/42 [00:00<00:04, 9.55it/s]
Processing TLK2P1--AC110079.1: 10%|▉ | 4/42 [00:00<00:03, 9.59it/s]
Processing STX16--NPEPL1: 10%|▉ | 4/42 [00:00<00:03, 9.59it/s]
Processing STX16--NPEPL1: 12%|█▏ | 5/42 [00:00<00:03, 9.61it/s]
Processing GOLGA6L10--GOLGA2P6: 12%|█▏ | 5/42 [00:00<00:03, 9.61it/s]
Processing GOLGA6L10--GOLGA2P6: 14%|█▍ | 6/42 [00:00<00:03, 9.62it/s]
Processing AC138409.2--NAIP: 14%|█▍ | 6/42 [00:00<00:03, 9.62it/s]
Processing AC138409.2--NAIP: 17%|█▋ | 7/42 [00:00<00:03, 9.63it/s]
Processing TVP23C--CDRT4: 17%|█▋ | 7/42 [00:00<00:03, 9.63it/s]
Processing TVP23C--CDRT4: 19%|█▉ | 8/42 [00:00<00:03, 9.63it/s]
Processing C1QTNF7-AS1--LINC00504: 19%|█▉ | 8/42 [00:00<00:03, 9.63it/s]
Processing C1QTNF7-AS1--LINC00504: 21%|██▏ | 9/42 [00:00<00:03, 9.64it/s]
Processing AP006294.2--ENPP7P3: 21%|██▏ | 9/42 [00:00<00:03, 9.64it/s]
Processing AP006294.2--ENPP7P3: 24%|██▍ | 10/42 [00:01<00:03, 9.64it/s]
Processing AP006294.2--LINC00665: 24%|██▍ | 10/42 [00:01<00:03, 9.64it/s]
Processing AP006294.2--LINC00665: 26%|██▌ | 11/42 [00:01<00:03, 9.64it/s]
Processing AC004923.1--AC127526.2: 26%|██▌ | 11/42 [00:01<00:03, 9.64it/s]
Processing AC004923.1--AC127526.2: 29%|██▊ | 12/42 [00:01<00:03, 9.64it/s]
Processing PCDHGB2--PCDHGA8: 29%|██▊ | 12/42 [00:01<00:03, 9.64it/s]
Processing PCDHGB2--PCDHGA8: 31%|███ | 13/42 [00:01<00:03, 9.64it/s]
Processing PCDHGB2--PCDHGB6: 31%|███ | 13/42 [00:01<00:03, 9.64it/s]
Processing PCDHGB2--PCDHGB6: 33%|███▎ | 14/42 [00:01<00:02, 9.64it/s]
Processing PCDHGB2--PCDHGA11: 33%|███▎ | 14/42 [00:01<00:02, 9.64it/s]
Processing PCDHGB2--PCDHGA11: 36%|███▌ | 15/42 [00:01<00:02, 9.64it/s]
Processing PCDHGB2--PCDHGC3: 36%|███▌ | 15/42 [00:01<00:02, 9.64it/s]
Processing PCDHGB2--PCDHGC3: 38%|███▊ | 16/42 [00:01<00:02, 9.64it/s]
Processing PCDHGB2--PCDHGC4: 38%|███▊ | 16/42 [00:01<00:02, 9.64it/s]
Processing PCDHGB2--PCDHGC4: 40%|████ | 17/42 [00:01<00:02, 9.64it/s]
Processing PCDHGB2--PCDHGC5: 40%|████ | 17/42 [00:01<00:02, 9.64it/s]
Processing PCDHGB2--PCDHGC5: 43%|████▎ | 18/42 [00:01<00:02, 9.64it/s]
Processing PCDHGB2--PCDHGA9: 43%|████▎ | 18/42 [00:01<00:02, 9.64it/s]
Processing PCDHGB2--PCDHGA9: 45%|████▌ | 19/42 [00:01<00:02, 9.64it/s]
Processing PCDHGB2--PCDHGA12: 45%|████▌ | 19/42 [00:01<00:02, 9.64it/s]
Processing PCDHGB2--PCDHGA12: 48%|████▊ | 20/42 [00:02<00:02, 9.63it/s]
Processing PCDHGB2--PCDHGB7: 48%|████▊ | 20/42 [00:02<00:02, 9.63it/s]
Processing PCDHGB2--PCDHGB7: 50%|█████ | 21/42 [00:02<00:02, 9.63it/s]
Processing PCDHGB2--PCDHGA10: 50%|█████ | 21/42 [00:02<00:02, 9.63it/s]
Processing PCDHGB2--PCDHGA10: 52%|█████▏ | 22/42 [00:02<00:02, 9.63it/s]
Processing THRAP3P2--SLCO3A1: 52%|█████▏ | 22/42 [00:02<00:02, 9.63it/s]
Processing THRAP3P2--SLCO3A1: 55%|█████▍ | 23/42 [00:02<00:01, 9.63it/s]
Processing SLCO3A1--SLCO3A1: 55%|█████▍ | 23/42 [00:02<00:01, 9.63it/s]
Processing SLCO3A1--SLCO3A1: 57%|█████▋ | 24/42 [00:02<00:01, 9.64it/s]
Processing UPK1B--IGSF11: 57%|█████▋ | 24/42 [00:02<00:01, 9.64it/s]
Processing UPK1B--IGSF11: 60%|█████▉ | 25/42 [00:02<00:01, 9.64it/s]
Processing B4GALT4--IGSF11: 60%|█████▉ | 25/42 [00:02<00:01, 9.64it/s]
Processing B4GALT4--IGSF11: 62%|██████▏ | 26/42 [00:02<00:01, 9.64it/s]
Processing AC092807.3--DDAH1: 62%|██████▏ | 26/42 [00:02<00:01, 9.64it/s]
Processing AC092807.3--DDAH1: 64%|██████▍ | 27/42 [00:02<00:01, 9.64it/s]
Processing AC079781.4--ASNS: 64%|██████▍ | 27/42 [00:02<00:01, 9.64it/s]
Processing AC079781.4--ASNS: 67%|██████▋ | 28/42 [00:02<00:01, 9.64it/s]
Processing STON1--GTF2A1L: 67%|██████▋ | 28/42 [00:02<00:01, 9.64it/s]
Processing STON1--GTF2A1L: 69%|██████▉ | 29/42 [00:03<00:01, 9.63it/s]
Processing AC090572.2--CNBD1: 69%|██████▉ | 29/42 [00:03<00:01, 9.63it/s]
Processing AC090572.2--CNBD1: 71%|███████▏ | 30/42 [00:03<00:01, 9.63it/s]
Processing PCDHA4--PCDHAC1: 71%|███████▏ | 30/42 [00:03<00:01, 9.63it/s]
Processing PCDHA4--PCDHAC1: 74%|███████▍ | 31/42 [00:03<00:01, 9.63it/s]
Processing PCDHA4--PCDHAC2: 74%|███████▍ | 31/42 [00:03<00:01, 9.63it/s]
Processing PCDHA4--PCDHAC2: 76%|███████▌ | 32/42 [00:03<00:01, 9.63it/s]
Processing PCDHA4--PCDHA13: 76%|███████▌ | 32/42 [00:03<00:01, 9.63it/s]
Processing PCDHA4--PCDHA13: 79%|███████▊ | 33/42 [00:03<00:00, 9.63it/s]
Processing SFRP4--EPDR1: 79%|███████▊ | 33/42 [00:03<00:00, 9.63it/s]
Processing SFRP4--EPDR1: 81%|████████ | 34/42 [00:03<00:00, 9.63it/s]
Processing CCDC169--SOHLH2: 81%|████████ | 34/42 [00:03<00:00, 9.63it/s]
Processing CCDC169--SOHLH2: 83%|████████▎ | 35/42 [00:03<00:00, 9.63it/s]
Processing GTF2A1L--STON1-GTF2A1L: 83%|████████▎ | 35/42 [00:03<00:00, 9.63it/s]
Processing GTF2A1L--STON1-GTF2A1L: 86%|████████▌ | 36/42 [00:03<00:00, 9.63it/s]
Processing PCDHA6--PCDHA13: 86%|████████▌ | 36/42 [00:03<00:00, 9.63it/s]
Processing PCDHA6--PCDHA13: 88%|████████▊ | 37/42 [00:03<00:00, 9.64it/s]
Processing PCDHA6--PCDHAC1: 88%|████████▊ | 37/42 [00:03<00:00, 9.64it/s]
Processing PCDHA6--PCDHAC1: 90%|█████████ | 38/42 [00:03<00:00, 9.64it/s]
Processing PCDHA6--PCDHAC2: 90%|█████████ | 38/42 [00:03<00:00, 9.64it/s]
Processing PCDHA6--PCDHAC2: 93%|█████████▎| 39/42 [00:04<00:00, 9.64it/s]
Processing AL512590.2--CCDC180: 93%|█████████▎| 39/42 [00:04<00:00, 9.64it/s]
Processing AL512590.2--CCDC180: 95%|█████████▌| 40/42 [00:04<00:00, 9.64it/s]
Processing MARVELD2--OCLN: 95%|█████████▌| 40/42 [00:04<00:00, 9.64it/s]
Processing MARVELD2--OCLN: 98%|█████████▊| 41/42 [00:04<00:00, 9.64it/s]
Processing RPS27P14--OCLN: 98%|█████████▊| 41/42 [00:04<00:00, 9.64it/s]
Processing RPS27P14--OCLN: 100%|██████████| 42/42 [00:04<00:00, 9.64it/s]
Processing RPS27P14--OCLN: 100%|██████████| 42/42 [00:04<00:00, 9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory