File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/3743446bc20d01913bfdbb1758098e/.command.log
Size
7.5 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (tih_rna_sample_00089_23H5VFLT4_s39)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/e3f7df57ce15b8c504671bffbabaeb/tih_rna_sample_00089_23H5VFLT4_s39.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-5b456d70-fab3-4fcc-916c-bc437f411fba/5f/4d32fc1f4ec7fe5ef236279e51ead4/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/3743446bc20d01913bfdbb1758098e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/3743446bc20d01913bfdbb1758098e/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/4318264a17711ac708ee99dd1959a9/tih_rna_sample_00089_23H5VFLT4_s39.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
PTPRK--RSPO3
starfusion
arriba
PIP5K1B--TJP2
starfusion
arriba
SIN3A--CORO2B
starfusion
arriba
WSB2--NOS1
starfusion
arriba
ADNP--KATNBL1
starfusion
arriba
TAF4--UBE2Q2
starfusion
arriba
SPIRE1--GREB1L
starfusion
arriba
TMEM87B--MERTK
starfusion
arriba
ARAP1--FCHSD2
starfusion
arriba
AVEN--NFATC2
starfusion
arriba
TLK2--AC240565.1
starfusion
PRELID3A--AFG3L2
starfusion
TRPM7--TMOD3
starfusion
arriba
RAI1--DRC3
starfusion
MAPK6--TRPM7
starfusion
arriba
STX16--NPEPL1
starfusion
arriba
SPRED1--ATP10A
starfusion
PRSS27--TPSB2
starfusion
TLK2P1--AC110079.1
starfusion
TRPM7--MAPK6
starfusion
arriba
FBXO25--AC240565.1
starfusion
FAM135A--AL080275.1
arriba
FAM135A--AL365226.1
arriba
SF3B3--COG4
arriba
TVP23C--CDRT4
arriba
CEP41--CEP41
arriba
CRYZL2P--SEC16B
arriba
ROCK1--AFG3L2
arriba
VAPB--AURKA
arriba
CASZ1--UBE4B
arriba
SAE1--AC011495.1
arriba
VWA8--ZNF346
arriba
AC015911.9--SLFN12L
arriba

  0%|          | 0/33 [00:00<?, ?it/s]
Processing PTPRK--RSPO3:   0%|          | 0/33 [00:00<?, ?it/s]
Processing PTPRK--RSPO3:   3%|▎         | 1/33 [00:00<00:03,  9.09it/s]
Processing PIP5K1B--TJP2:   3%|▎         | 1/33 [00:00<00:03,  9.09it/s]
Processing PIP5K1B--TJP2:   6%|▌         | 2/33 [00:00<00:03,  9.38it/s]
Processing SIN3A--CORO2B:   6%|▌         | 2/33 [00:00<00:03,  9.38it/s]
Processing SIN3A--CORO2B:   9%|▉         | 3/33 [00:00<00:03,  9.48it/s]
Processing WSB2--NOS1:   9%|▉         | 3/33 [00:00<00:03,  9.48it/s]   
Processing WSB2--NOS1:  12%|█▏        | 4/33 [00:00<00:03,  9.53it/s]
Processing ADNP--KATNBL1:  12%|█▏        | 4/33 [00:00<00:03,  9.53it/s]
Processing ADNP--KATNBL1:  15%|█▌        | 5/33 [00:00<00:02,  9.56it/s]
Processing TAF4--UBE2Q2:  15%|█▌        | 5/33 [00:00<00:02,  9.56it/s] 
Processing TAF4--UBE2Q2:  18%|█▊        | 6/33 [00:00<00:02,  9.57it/s]
Processing SPIRE1--GREB1L:  18%|█▊        | 6/33 [00:00<00:02,  9.57it/s]
Processing SPIRE1--GREB1L:  21%|██        | 7/33 [00:00<00:02,  9.58it/s]
Processing TMEM87B--MERTK:  21%|██        | 7/33 [00:00<00:02,  9.58it/s]
Processing TMEM87B--MERTK:  24%|██▍       | 8/33 [00:00<00:02,  9.59it/s]
Processing ARAP1--FCHSD2:  24%|██▍       | 8/33 [00:00<00:02,  9.59it/s] 
Processing ARAP1--FCHSD2:  27%|██▋       | 9/33 [00:00<00:02,  9.60it/s]
Processing AVEN--NFATC2:  27%|██▋       | 9/33 [00:00<00:02,  9.60it/s] 
Processing AVEN--NFATC2:  30%|███       | 10/33 [00:01<00:02,  9.60it/s]
Processing TLK2--AC240565.1:  30%|███       | 10/33 [00:01<00:02,  9.60it/s]
Processing TLK2--AC240565.1:  33%|███▎      | 11/33 [00:01<00:02,  9.60it/s]
Processing PRELID3A--AFG3L2:  33%|███▎      | 11/33 [00:01<00:02,  9.60it/s]
Processing PRELID3A--AFG3L2:  36%|███▋      | 12/33 [00:01<00:02,  9.60it/s]
Processing TRPM7--TMOD3:  36%|███▋      | 12/33 [00:01<00:02,  9.60it/s]    
Processing TRPM7--TMOD3:  39%|███▉      | 13/33 [00:01<00:02,  9.60it/s]
Processing RAI1--DRC3:  39%|███▉      | 13/33 [00:01<00:02,  9.60it/s]  
Processing RAI1--DRC3:  42%|████▏     | 14/33 [00:01<00:01,  9.61it/s]
Processing MAPK6--TRPM7:  42%|████▏     | 14/33 [00:01<00:01,  9.61it/s]
Processing MAPK6--TRPM7:  45%|████▌     | 15/33 [00:01<00:01,  9.60it/s]
Processing STX16--NPEPL1:  45%|████▌     | 15/33 [00:01<00:01,  9.60it/s]
Processing STX16--NPEPL1:  48%|████▊     | 16/33 [00:01<00:01,  9.61it/s]
Processing SPRED1--ATP10A:  48%|████▊     | 16/33 [00:01<00:01,  9.61it/s]
Processing SPRED1--ATP10A:  52%|█████▏    | 17/33 [00:01<00:01,  9.61it/s]
Processing PRSS27--TPSB2:  52%|█████▏    | 17/33 [00:01<00:01,  9.61it/s] 
Processing PRSS27--TPSB2:  55%|█████▍    | 18/33 [00:01<00:01,  9.61it/s]
Processing TLK2P1--AC110079.1:  55%|█████▍    | 18/33 [00:01<00:01,  9.61it/s]
Processing TLK2P1--AC110079.1:  58%|█████▊    | 19/33 [00:01<00:01,  9.61it/s]
Processing TRPM7--MAPK6:  58%|█████▊    | 19/33 [00:01<00:01,  9.61it/s]      
Processing TRPM7--MAPK6:  61%|██████    | 20/33 [00:02<00:01,  9.61it/s]
Processing FBXO25--AC240565.1:  61%|██████    | 20/33 [00:02<00:01,  9.61it/s]
Processing FBXO25--AC240565.1:  64%|██████▎   | 21/33 [00:02<00:01,  9.61it/s]
Processing FAM135A--AL080275.1:  64%|██████▎   | 21/33 [00:02<00:01,  9.61it/s]
Processing FAM135A--AL080275.1:  67%|██████▋   | 22/33 [00:02<00:01,  9.61it/s]
Processing FAM135A--AL365226.1:  67%|██████▋   | 22/33 [00:02<00:01,  9.61it/s]
Processing FAM135A--AL365226.1:  70%|██████▉   | 23/33 [00:02<00:01,  9.61it/s]
Processing SF3B3--COG4:  70%|██████▉   | 23/33 [00:02<00:01,  9.61it/s]        
Processing SF3B3--COG4:  73%|███████▎  | 24/33 [00:02<00:00,  9.61it/s]
Processing TVP23C--CDRT4:  73%|███████▎  | 24/33 [00:02<00:00,  9.61it/s]
Processing TVP23C--CDRT4:  76%|███████▌  | 25/33 [00:02<00:00,  9.61it/s]
Processing CEP41--CEP41:  76%|███████▌  | 25/33 [00:02<00:00,  9.61it/s] 
Processing CEP41--CEP41:  79%|███████▉  | 26/33 [00:02<00:00,  9.61it/s]
Processing CRYZL2P--SEC16B:  79%|███████▉  | 26/33 [00:02<00:00,  9.61it/s]
Processing CRYZL2P--SEC16B:  82%|████████▏ | 27/33 [00:02<00:00,  9.61it/s]
Processing ROCK1--AFG3L2:  82%|████████▏ | 27/33 [00:02<00:00,  9.61it/s]  
Processing ROCK1--AFG3L2:  85%|████████▍ | 28/33 [00:02<00:00,  9.61it/s]
Processing VAPB--AURKA:  85%|████████▍ | 28/33 [00:02<00:00,  9.61it/s]  
Processing VAPB--AURKA:  88%|████████▊ | 29/33 [00:03<00:00,  9.61it/s]
Processing CASZ1--UBE4B:  88%|████████▊ | 29/33 [00:03<00:00,  9.61it/s]
Processing CASZ1--UBE4B:  91%|█████████ | 30/33 [00:03<00:00,  9.61it/s]
Processing SAE1--AC011495.1:  91%|█████████ | 30/33 [00:03<00:00,  9.61it/s]
Processing SAE1--AC011495.1:  94%|█████████▍| 31/33 [00:03<00:00,  9.61it/s]
Processing VWA8--ZNF346:  94%|█████████▍| 31/33 [00:03<00:00,  9.61it/s]    
Processing VWA8--ZNF346:  97%|█████████▋| 32/33 [00:03<00:00,  9.61it/s]
Processing AC015911.9--SLFN12L:  97%|█████████▋| 32/33 [00:03<00:00,  9.61it/s]
Processing AC015911.9--SLFN12L: 100%|██████████| 33/33 [00:03<00:00,  9.61it/s]
Processing AC015911.9--SLFN12L: 100%|██████████| 33/33 [00:03<00:00,  9.59it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory