.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:SAMTOOLS_VIEW_ALIGNMENT_CRAM (tih_rna_sample_00121_23H5VFLT4_s41)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/bcf789387e7cc36992e7581acc1baf/.command.log
Size: 829 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:SAMTOOLS_VIEW_ALIGNMENT_CRAM (tih_rna_sample_00121_23H5VFLT4_s41)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/c49fa31f6e1ce7cfcfb0d70e1d3d00/tih_rna_sample_00121_23H5VFLT4_s41.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/543d35a1803989635defbce98a42ca/tih_rna_sample_00121_23H5VFLT4_s41.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/bcf789387e7cc36992e7581acc1baf/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/bcf789387e7cc36992e7581acc1baf/.command.run
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory