Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/65317c0d7e01654d97a67aea9d5671/tih_rna_sample_00089_23H5VFLT4_s39.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/2a417cb02ea714d454e2dd5bb89007/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/2a417cb02ea714d454e2dd5bb89007/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 294828956
unpaired = 3780037
MERGED PAIRED END READS = 294828956
MATES PROCESSED = 593437949
TOTAL READS     = 298608993
DISTINCT READS  = 1.50023e+08
DISTINCT COUNTS = 1071
MAX COUNT       = 466444
COUNTS OF 1     = 8.75104e+07
MAX TERMS       = 100
OBSERVED COUNTS (466445)
1	87510415
2	33195039
3	14019469
4	6477646
5	3261648
6	1782867
7	1050296
8	660681
9	441360
10	308849
11	224768
12	169274
13	130132
14	102626
15	83315
16	68480
17	56506
18	47775
19	40412
20	34761
21	30240
22	25988
23	22862
24	20351
25	18259
26	16144
27	14170
28	12912
29	11788
30	10663
31	9626
32	8778
33	8273
34	7418
35	6845
36	6327
37	5923
38	5411
39	5047
40	4645
41	4427
42	4136
43	3954
44	3608
45	3435
46	3143
47	3104
48	2857
49	2700
50	2549
51	2421
52	2245
53	2132
54	2041
55	1864
56	1847
57	1740
58	1773
59	1558
60	1546
61	1449
62	1365
63	1332
64	1310
65	1276
66	1171
67	1064
68	1074
69	1018
70	1031
71	927
72	948
73	925
74	882
75	810
76	747
77	812
78	772
79	753
80	706
81	669
82	614
83	627
84	606
85	643
86	527
87	533
88	548
89	468
90	527
91	495
92	525
93	458
94	422
95	442
96	431
97	385
98	383
99	433
100	417
101	376
102	360
103	341
104	330
105	337
106	338
107	299
108	300
109	335
110	293
111	287
112	267
113	284
114	288
115	258
116	261
117	251
118	245
119	228
120	210
121	247
122	194
123	222
124	218
125	191
126	204
127	188
128	188
129	182
130	175
131	179
132	177
133	180
134	155
135	162
136	150
137	175
138	145
139	182
140	154
141	145
142	138
143	125
144	151
145	147
146	152
147	151
148	119
149	124
150	129
151	119
152	120
153	117
154	134
155	136
156	117
157	113
158	115
159	91
160	101
161	98
162	102
163	111
164	119
165	105
166	92
167	107
168	100
169	90
170	87
171	76
172	102
173	93
174	84
175	103
176	95
177	66
178	77
179	58
180	77
181	89
182	81
183	75
184	90
185	65
186	68
187	62
188	72
189	74
190	55
191	59
192	52
193	71
194	70
195	68
196	64
197	52
198	57
199	50
200	62
201	67
202	49
203	63
204	53
205	43
206	52
207	63
208	36
209	54
210	50
211	44
212	55
213	46
214	52
215	48
216	39
217	50
218	51
219	53
220	39
221	46
222	46
223	50
224	34
225	45
226	46
227	40
228	37
229	34
230	42
231	40
232	41
233	32
234	36
235	35
236	37
237	31
238	40
239	29
240	28
241	38
242	38
243	32
244	31
245	33
246	37
247	34
248	24
249	28
250	26
251	28
252	30
253	33
254	31
255	28
256	35
257	28
258	24
259	18
260	25
261	39
262	29
263	26
264	33
265	38
266	28
267	28
268	22
269	17
270	34
271	25
272	32
273	16
274	25
275	22
276	17
277	20
278	24
279	19
280	29
281	27
282	14
283	22
284	17
285	23
286	27
287	20
288	16
289	19
290	14
291	14
292	20
293	27
294	23
295	21
296	27
297	34
298	14
299	17
300	23
301	24
302	15
303	17
304	24
305	15
306	19
307	18
308	15
309	20
310	15
311	12
312	18
313	16
314	16
315	21
316	18
317	17
318	21
319	15
320	17
321	19
322	14
323	13
324	17
325	17
326	18
327	17
328	15
329	14
330	19
331	14
332	13
333	16
334	12
335	8
336	9
337	11
338	9
339	11
340	12
341	6
342	12
343	10
344	12
345	8
346	13
347	12
348	16
349	16
350	12
351	12
352	9
353	13
354	10
355	16
356	14
357	15
358	13
359	12
360	14
361	10
362	9
363	7
364	21
365	10
366	9
367	10
368	12
369	13
370	7
371	6
372	5
373	15
374	9
375	9
376	5
377	8
378	7
379	4
380	12
381	13
382	6
383	8
384	11
385	4
386	8
387	7
388	6
389	10
390	8
391	12
392	5
393	7
394	10
395	11
396	5
397	12
398	6
399	4
400	7
401	6
402	11
403	10
404	8
405	9
406	7
407	10
408	9
409	7
410	11
411	7
412	6
413	5
414	10
415	10
416	7
417	9
418	6
419	7
420	6
421	9
422	8
423	4
424	12
425	7
426	11
427	7
428	10
429	7
430	6
431	4
432	7
433	5
434	8
435	6
436	7
437	3
438	12
439	12
440	5
441	9
442	5
443	7
444	8
445	4
446	6
447	5
448	10
449	7
450	4
451	7
452	3
453	4
454	8
455	3
456	7
457	6
458	5
459	5
460	6
461	4
462	8
463	5
464	4
465	2
466	7
467	4
468	4
469	4
470	8
471	4
472	5
473	4
474	5
475	5
476	5
477	6
478	8
479	6
480	8
481	5
482	6
483	2
484	7
485	4
486	6
487	1
488	3
489	1
490	4
491	4
492	6
493	5
494	4
495	7
496	3
497	6
498	2
499	3
500	8
501	8
502	5
503	9
504	2
505	4
506	4
507	4
508	9
509	1
510	5
511	4
512	4
513	5
514	6
515	2
516	3
517	6
518	4
519	2
520	5
521	5
522	2
523	7
524	4
525	2
526	7
527	5
528	5
529	8
530	4
531	3
532	4
533	6
534	3
535	2
536	3
537	5
538	2
539	7
540	4
541	2
542	3
543	4
544	4
545	3
546	2
547	2
548	5
549	2
550	4
551	3
552	3
553	2
554	4
555	3
556	1
557	5
558	5
559	4
560	4
561	3
562	3
563	1
564	3
565	2
566	2
567	3
569	4
570	4
571	4
572	1
573	2
574	2
575	2
576	4
577	2
578	1
579	1
580	1
582	2
583	6
584	3
585	5
586	5
588	4
589	1
590	3
591	3
593	3
594	5
595	5
596	2
597	2
598	2
599	5
600	1
601	3
602	2
603	3
604	1
605	2
606	3
607	3
608	3
609	5
610	4
612	2
613	4
614	4
615	3
616	2
617	4
619	2
620	1
621	3
622	3
623	2
624	1
625	2
626	2
627	5
628	1
629	4
630	2
631	2
632	7
633	4
634	4
635	1
636	1
637	4
638	3
639	2
640	5
641	2
642	1
643	2
644	1
645	3
646	4
647	2
648	2
649	3
650	1
651	1
652	2
654	5
655	1
656	3
657	1
658	4
659	2
660	1
661	3
662	6
663	5
664	2
665	2
666	2
667	2
668	2
669	1
670	5
671	2
672	2
673	2
674	2
675	2
676	1
677	2
678	1
679	1
681	3
683	2
684	3
685	1
686	1
687	1
688	1
690	2
691	1
692	1
693	2
695	3
696	1
697	1
698	2
699	2
702	4
705	1
706	2
707	1
708	3
709	2
710	5
711	1
713	2
714	3
715	3
717	2
718	4
719	4
720	3
721	2
722	2
723	2
725	2
726	1
727	4
728	3
729	1
733	1
734	4
736	1
737	1
738	1
742	1
743	1
744	1
745	2
747	1
748	3
749	1
751	1
752	1
753	1
754	4
755	2
756	1
757	2
759	3
760	3
763	1
764	2
765	1
767	3
768	1
771	4
772	2
773	4
774	2
775	1
776	2
777	1
778	1
779	1
781	4
784	1
785	2
787	1
788	1
789	2
790	2
792	1
793	2
794	2
795	3
797	1
799	2
802	1
803	1
805	2
806	1
808	2
809	2
810	1
814	1
815	1
817	1
818	3
821	1
822	5
823	2
825	2
826	2
827	2
828	1
830	3
831	1
832	1
833	2
835	2
836	1
839	1
840	3
843	1
844	3
845	1
846	1
848	1
851	1
854	1
855	1
857	2
859	1
860	1
861	1
862	1
864	1
865	4
871	2
872	1
874	1
877	1
878	1
884	1
885	3
886	4
888	1
889	1
890	1
891	2
896	1
897	1
902	2
903	1
904	1
908	1
909	1
910	1
912	1
913	1
915	1
916	1
917	1
919	1
920	3
922	1
924	1
927	1
928	1
929	2
931	1
932	2
933	2
934	1
938	1
939	1
942	1
946	1
947	1
949	1
950	1
951	1
952	2
953	1
954	2
955	3
960	1
961	1
964	2
965	1
966	1
967	1
968	1
969	2
970	2
971	1
978	1
979	1
980	3
982	1
984	3
985	1
987	1
988	1
990	1
1000	2
1001	1
1002	1
1003	1
1004	3
1010	2
1011	1
1014	2
1015	1
1016	1
1017	2
1018	1
1021	1
1024	2
1026	2
1032	1
1033	1
1035	1
1039	1
1040	1
1044	2
1045	1
1049	1
1056	1
1057	1
1062	1
1063	1
1071	1
1072	2
1074	1
1075	1
1081	1
1089	1
1099	1
1102	1
1107	1
1109	1
1110	1
1111	1
1112	2
1113	1
1123	2
1125	1
1130	1
1132	1
1136	2
1137	2
1145	1
1151	1
1157	1
1159	1
1162	1
1165	1
1166	1
1168	1
1169	1
1170	1
1173	1
1174	1
1186	2
1189	1
1193	1
1195	2
1199	1
1201	1
1204	1
1205	1
1208	1
1217	1
1223	1
1227	1
1233	1
1234	1
1241	1
1242	1
1246	1
1247	1
1248	1
1252	1
1255	1
1257	2
1258	2
1259	1
1260	1
1261	1
1264	1
1273	1
1279	1
1282	1
1295	2
1305	1
1307	1
1316	1
1317	1
1321	1
1325	1
1326	1
1327	1
1329	1
1331	1
1332	1
1339	1
1344	1
1346	1
1361	1
1368	1
1375	1
1391	1
1394	1
1395	1
1397	1
1400	1
1407	2
1409	1
1420	1
1423	1
1425	1
1427	1
1440	1
1450	1
1451	1
1454	1
1456	1
1462	1
1466	1
1467	1
1468	1
1477	1
1481	1
1487	1
1513	1
1541	1
1553	1
1560	1
1568	1
1574	1
1584	1
1588	1
1594	1
1609	1
1632	1
1639	1
1669	1
1689	1
1698	1
1701	1
1704	1
1715	1
1720	1
1727	1
1730	1
1733	1
1742	1
1763	1
1778	1
1836	1
1844	1
1861	1
1865	1
1869	1
1879	1
1880	1
1920	1
1933	1
1949	1
1964	1
1971	1
1974	1
1991	1
2008	2
2081	1
2111	1
2150	1
2175	1
2189	1
2259	1
2263	1
2303	1
2343	1
2428	1
2485	1
2499	1
2517	1
2561	1
2624	1
2788	1
2829	1
2835	1
2868	1
2909	1
3045	1
3302	1
3935	1
4133	1
4234	1
4546	1
4920	1
5075	1
5401	1
6338	1
6507	1
7728	1
17466	1
466444	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
._......._._..............._.._........_._.........__.._...._.......__..
..._.._....__.........._.__._._....._......._.......
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]