Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/65317c0d7e01654d97a67aea9d5671/tih_rna_sample_00089_23H5VFLT4_s39.Aligned.sortedByCoord.out.bam Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/2a417cb02ea714d454e2dd5bb89007/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/2a417cb02ea714d454e2dd5bb89007/.command.run ==> STAGING COMPLETE (3 inputs) PAIRED_END_BAM_INPUT Processed 1000000 records Processed 2000000 records Processed 3000000 records Processed 4000000 records Processed 5000000 records Processed 6000000 records Processed 7000000 records Processed 8000000 records Processed 9000000 records Processed 10000000 records Processed 11000000 records Processed 12000000 records Processed 13000000 records Processed 14000000 records Processed 15000000 records Processed 16000000 records Processed 17000000 records Processed 18000000 records Processed 19000000 records Processed 20000000 records Processed 21000000 records 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Processed 59000000 records Processed 60000000 records Processed 61000000 records Processed 62000000 records Processed 63000000 records Processed 64000000 records Processed 65000000 records Processed 66000000 records Processed 67000000 records Processed 68000000 records Processed 69000000 records Processed 70000000 records Processed 71000000 records Processed 72000000 records Processed 73000000 records Processed 74000000 records Processed 75000000 records Processed 76000000 records Processed 77000000 records Processed 78000000 records Processed 79000000 records Processed 80000000 records Processed 81000000 records Processed 82000000 records Processed 83000000 records Processed 84000000 records Processed 85000000 records Processed 86000000 records Processed 87000000 records Processed 88000000 records Processed 89000000 records Processed 90000000 records Processed 91000000 records Processed 92000000 records Processed 93000000 records Processed 94000000 records Processed 95000000 records Processed 96000000 records Processed 97000000 records Processed 98000000 records Processed 99000000 records Processed 100000000 records Processed 101000000 records Processed 102000000 records Processed 103000000 records Processed 104000000 records Processed 105000000 records Processed 106000000 records Processed 107000000 records Processed 108000000 records Processed 109000000 records Processed 110000000 records Processed 111000000 records Processed 112000000 records Processed 113000000 records Processed 114000000 records Processed 115000000 records Processed 116000000 records Processed 117000000 records Processed 118000000 records Processed 119000000 records Processed 120000000 records Processed 121000000 records Processed 122000000 records Processed 123000000 records Processed 124000000 records Processed 125000000 records Processed 126000000 records Processed 127000000 records Processed 128000000 records Processed 129000000 records Processed 130000000 records Processed 131000000 records Processed 132000000 records Processed 133000000 records Processed 134000000 records Processed 135000000 records Processed 136000000 records Processed 137000000 records Processed 138000000 records Processed 139000000 records Processed 140000000 records Processed 141000000 records Processed 142000000 records Processed 143000000 records Processed 144000000 records Processed 145000000 records Processed 146000000 records Processed 147000000 records Processed 148000000 records Processed 149000000 records Processed 150000000 records Processed 151000000 records Processed 152000000 records Processed 153000000 records Processed 154000000 records Processed 155000000 records Processed 156000000 records Processed 157000000 records Processed 158000000 records Processed 159000000 records Processed 160000000 records Processed 161000000 records Processed 162000000 records Processed 163000000 records Processed 164000000 records Processed 165000000 records Processed 166000000 records Processed 167000000 records Processed 168000000 records Processed 169000000 records Processed 170000000 records Processed 171000000 records Processed 172000000 records Processed 173000000 records Processed 174000000 records Processed 175000000 records Processed 176000000 records Processed 177000000 records Processed 178000000 records Processed 179000000 records Processed 180000000 records Processed 181000000 records Processed 182000000 records Processed 183000000 records Processed 184000000 records Processed 185000000 records Processed 186000000 records Processed 187000000 records Processed 188000000 records Processed 189000000 records Processed 190000000 records Processed 191000000 records Processed 192000000 records Processed 193000000 records Processed 194000000 records Processed 195000000 records Processed 196000000 records Processed 197000000 records Processed 198000000 records Processed 199000000 records Processed 200000000 records Processed 201000000 records Processed 202000000 records Processed 203000000 records Processed 204000000 records Processed 205000000 records Processed 206000000 records Processed 207000000 records Processed 208000000 records Processed 209000000 records Processed 210000000 records Processed 211000000 records Processed 212000000 records Processed 213000000 records Processed 214000000 records Processed 215000000 records Processed 216000000 records Processed 217000000 records Processed 218000000 records Processed 219000000 records Processed 220000000 records Processed 221000000 records Processed 222000000 records Processed 223000000 records Processed 224000000 records Processed 225000000 records Processed 226000000 records Processed 227000000 records Processed 228000000 records Processed 229000000 records Processed 230000000 records Processed 231000000 records Processed 232000000 records Processed 233000000 records Processed 234000000 records Processed 235000000 records Processed 236000000 records Processed 237000000 records Processed 238000000 records Processed 239000000 records Processed 240000000 records Processed 241000000 records Processed 242000000 records Processed 243000000 records Processed 244000000 records Processed 245000000 records Processed 246000000 records Processed 247000000 records Processed 248000000 records Processed 249000000 records Processed 250000000 records Processed 251000000 records Processed 252000000 records Processed 253000000 records Processed 254000000 records Processed 255000000 records Processed 256000000 records Processed 257000000 records Processed 258000000 records Processed 259000000 records Processed 260000000 records Processed 261000000 records Processed 262000000 records Processed 263000000 records Processed 264000000 records Processed 265000000 records Processed 266000000 records Processed 267000000 records Processed 268000000 records Processed 269000000 records Processed 270000000 records Processed 271000000 records Processed 272000000 records Processed 273000000 records Processed 274000000 records Processed 275000000 records Processed 276000000 records Processed 277000000 records Processed 278000000 records Processed 279000000 records Processed 280000000 records Processed 281000000 records Processed 282000000 records Processed 283000000 records Processed 284000000 records Processed 285000000 records Processed 286000000 records Processed 287000000 records Processed 288000000 records Processed 289000000 records Processed 290000000 records Processed 291000000 records Processed 292000000 records Processed 293000000 records Processed 294000000 records Processed 295000000 records Processed 296000000 records Processed 297000000 records Processed 298000000 records Processed 299000000 records Processed 300000000 records Processed 301000000 records Processed 302000000 records Processed 303000000 records Processed 304000000 records Processed 305000000 records Processed 306000000 records Processed 307000000 records Processed 308000000 records Processed 309000000 records Processed 310000000 records Processed 311000000 records Processed 312000000 records Processed 313000000 records Processed 314000000 records Processed 315000000 records Processed 316000000 records Processed 317000000 records Processed 318000000 records Processed 319000000 records Processed 320000000 records Processed 321000000 records Processed 322000000 records Processed 323000000 records Processed 324000000 records Processed 325000000 records Processed 326000000 records Processed 327000000 records Processed 328000000 records Processed 329000000 records Processed 330000000 records Processed 331000000 records Processed 332000000 records Processed 333000000 records Processed 334000000 records Processed 335000000 records Processed 336000000 records Processed 337000000 records Processed 338000000 records Processed 339000000 records Processed 340000000 records Processed 341000000 records Processed 342000000 records Processed 343000000 records Processed 344000000 records Processed 345000000 records Processed 346000000 records Processed 347000000 records Processed 348000000 records Processed 349000000 records Processed 350000000 records Processed 351000000 records Processed 352000000 records Processed 353000000 records Processed 354000000 records Processed 355000000 records Processed 356000000 records Processed 357000000 records Processed 358000000 records Processed 359000000 records Processed 360000000 records Processed 361000000 records Processed 362000000 records Processed 363000000 records Processed 364000000 records Processed 365000000 records Processed 366000000 records Processed 367000000 records Processed 368000000 records Processed 369000000 records Processed 370000000 records Processed 371000000 records Processed 372000000 records Processed 373000000 records Processed 374000000 records Processed 375000000 records Processed 376000000 records Processed 377000000 records Processed 378000000 records Processed 379000000 records Processed 380000000 records Processed 381000000 records Processed 382000000 records Processed 383000000 records Processed 384000000 records Processed 385000000 records Processed 386000000 records Processed 387000000 records Processed 388000000 records Processed 389000000 records Processed 390000000 records Processed 391000000 records Processed 392000000 records Processed 393000000 records Processed 394000000 records Processed 395000000 records Processed 396000000 records Processed 397000000 records Processed 398000000 records Processed 399000000 records Processed 400000000 records Processed 401000000 records Processed 402000000 records Processed 403000000 records Processed 404000000 records Processed 405000000 records Processed 406000000 records Processed 407000000 records Processed 408000000 records Processed 409000000 records Processed 410000000 records Processed 411000000 records Processed 412000000 records Processed 413000000 records Processed 414000000 records Processed 415000000 records Processed 416000000 records Processed 417000000 records Processed 418000000 records Processed 419000000 records Processed 420000000 records Processed 421000000 records Processed 422000000 records Processed 423000000 records Processed 424000000 records Processed 425000000 records Processed 426000000 records Processed 427000000 records Processed 428000000 records Processed 429000000 records Processed 430000000 records Processed 431000000 records Processed 432000000 records Processed 433000000 records Processed 434000000 records Processed 435000000 records Processed 436000000 records Processed 437000000 records Processed 438000000 records Processed 439000000 records Processed 440000000 records Processed 441000000 records Processed 442000000 records Processed 443000000 records Processed 444000000 records Processed 445000000 records Processed 446000000 records Processed 447000000 records Processed 448000000 records Processed 449000000 records Processed 450000000 records Processed 451000000 records Processed 452000000 records Processed 453000000 records Processed 454000000 records Processed 455000000 records Processed 456000000 records Processed 457000000 records Processed 458000000 records Processed 459000000 records Processed 460000000 records Processed 461000000 records Processed 462000000 records Processed 463000000 records Processed 464000000 records Processed 465000000 records Processed 466000000 records Processed 467000000 records Processed 468000000 records Processed 469000000 records Processed 470000000 records Processed 471000000 records Processed 472000000 records Processed 473000000 records Processed 474000000 records Processed 475000000 records Processed 476000000 records Processed 477000000 records Processed 478000000 records Processed 479000000 records Processed 480000000 records Processed 481000000 records Processed 482000000 records Processed 483000000 records Processed 484000000 records Processed 485000000 records Processed 486000000 records Processed 487000000 records Processed 488000000 records Processed 489000000 records Processed 490000000 records Processed 491000000 records Processed 492000000 records Processed 493000000 records Processed 494000000 records Processed 495000000 records Processed 496000000 records Processed 497000000 records Processed 498000000 records Processed 499000000 records Processed 500000000 records Processed 501000000 records Processed 502000000 records Processed 503000000 records Processed 504000000 records Processed 505000000 records Processed 506000000 records Processed 507000000 records Processed 508000000 records Processed 509000000 records Processed 510000000 records Processed 511000000 records Processed 512000000 records Processed 513000000 records Processed 514000000 records Processed 515000000 records Processed 516000000 records Processed 517000000 records Processed 518000000 records Processed 519000000 records Processed 520000000 records Processed 521000000 records Processed 522000000 records Processed 523000000 records Processed 524000000 records Processed 525000000 records Processed 526000000 records Processed 527000000 records Processed 528000000 records Processed 529000000 records Processed 530000000 records Processed 531000000 records Processed 532000000 records Processed 533000000 records Processed 534000000 records Processed 535000000 records Processed 536000000 records Processed 537000000 records Processed 538000000 records Processed 539000000 records Processed 540000000 records Processed 541000000 records Processed 542000000 records Processed 543000000 records Processed 544000000 records Processed 545000000 records Processed 546000000 records Processed 547000000 records Processed 548000000 records Processed 549000000 records Processed 550000000 records Processed 551000000 records Processed 552000000 records Processed 553000000 records Processed 554000000 records Processed 555000000 records Processed 556000000 records Processed 557000000 records Processed 558000000 records Processed 559000000 records Processed 560000000 records Processed 561000000 records Processed 562000000 records Processed 563000000 records Processed 564000000 records Processed 565000000 records Processed 566000000 records Processed 567000000 records Processed 568000000 records Processed 569000000 records Processed 570000000 records Processed 571000000 records Processed 572000000 records Processed 573000000 records Processed 574000000 records Processed 575000000 records Processed 576000000 records Processed 577000000 records Processed 578000000 records Processed 579000000 records Processed 580000000 records Processed 581000000 records Processed 582000000 records Processed 583000000 records Processed 584000000 records Processed 585000000 records Processed 586000000 records Processed 587000000 records Processed 588000000 records Processed 589000000 records Processed 590000000 records Processed 591000000 records Processed 592000000 records Processed 593000000 records paired = 294828956 unpaired = 3780037 MERGED PAIRED END READS = 294828956 MATES PROCESSED = 593437949 TOTAL READS = 298608993 DISTINCT READS = 1.50023e+08 DISTINCT COUNTS = 1071 MAX COUNT = 466444 COUNTS OF 1 = 8.75104e+07 MAX TERMS = 100 OBSERVED COUNTS (466445) 1 87510415 2 33195039 3 14019469 4 6477646 5 3261648 6 1782867 7 1050296 8 660681 9 441360 10 308849 11 224768 12 169274 13 130132 14 102626 15 83315 16 68480 17 56506 18 47775 19 40412 20 34761 21 30240 22 25988 23 22862 24 20351 25 18259 26 16144 27 14170 28 12912 29 11788 30 10663 31 9626 32 8778 33 8273 34 7418 35 6845 36 6327 37 5923 38 5411 39 5047 40 4645 41 4427 42 4136 43 3954 44 3608 45 3435 46 3143 47 3104 48 2857 49 2700 50 2549 51 2421 52 2245 53 2132 54 2041 55 1864 56 1847 57 1740 58 1773 59 1558 60 1546 61 1449 62 1365 63 1332 64 1310 65 1276 66 1171 67 1064 68 1074 69 1018 70 1031 71 927 72 948 73 925 74 882 75 810 76 747 77 812 78 772 79 753 80 706 81 669 82 614 83 627 84 606 85 643 86 527 87 533 88 548 89 468 90 527 91 495 92 525 93 458 94 422 95 442 96 431 97 385 98 383 99 433 100 417 101 376 102 360 103 341 104 330 105 337 106 338 107 299 108 300 109 335 110 293 111 287 112 267 113 284 114 288 115 258 116 261 117 251 118 245 119 228 120 210 121 247 122 194 123 222 124 218 125 191 126 204 127 188 128 188 129 182 130 175 131 179 132 177 133 180 134 155 135 162 136 150 137 175 138 145 139 182 140 154 141 145 142 138 143 125 144 151 145 147 146 152 147 151 148 119 149 124 150 129 151 119 152 120 153 117 154 134 155 136 156 117 157 113 158 115 159 91 160 101 161 98 162 102 163 111 164 119 165 105 166 92 167 107 168 100 169 90 170 87 171 76 172 102 173 93 174 84 175 103 176 95 177 66 178 77 179 58 180 77 181 89 182 81 183 75 184 90 185 65 186 68 187 62 188 72 189 74 190 55 191 59 192 52 193 71 194 70 195 68 196 64 197 52 198 57 199 50 200 62 201 67 202 49 203 63 204 53 205 43 206 52 207 63 208 36 209 54 210 50 211 44 212 55 213 46 214 52 215 48 216 39 217 50 218 51 219 53 220 39 221 46 222 46 223 50 224 34 225 45 226 46 227 40 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5 373 15 374 9 375 9 376 5 377 8 378 7 379 4 380 12 381 13 382 6 383 8 384 11 385 4 386 8 387 7 388 6 389 10 390 8 391 12 392 5 393 7 394 10 395 11 396 5 397 12 398 6 399 4 400 7 401 6 402 11 403 10 404 8 405 9 406 7 407 10 408 9 409 7 410 11 411 7 412 6 413 5 414 10 415 10 416 7 417 9 418 6 419 7 420 6 421 9 422 8 423 4 424 12 425 7 426 11 427 7 428 10 429 7 430 6 431 4 432 7 433 5 434 8 435 6 436 7 437 3 438 12 439 12 440 5 441 9 442 5 443 7 444 8 445 4 446 6 447 5 448 10 449 7 450 4 451 7 452 3 453 4 454 8 455 3 456 7 457 6 458 5 459 5 460 6 461 4 462 8 463 5 464 4 465 2 466 7 467 4 468 4 469 4 470 8 471 4 472 5 473 4 474 5 475 5 476 5 477 6 478 8 479 6 480 8 481 5 482 6 483 2 484 7 485 4 486 6 487 1 488 3 489 1 490 4 491 4 492 6 493 5 494 4 495 7 496 3 497 6 498 2 499 3 500 8 501 8 502 5 503 9 504 2 505 4 506 4 507 4 508 9 509 1 510 5 511 4 512 4 513 5 514 6 515 2 516 3 517 6 518 4 519 2 520 5 521 5 522 2 523 7 524 4 525 2 526 7 527 5 528 5 529 8 530 4 531 3 532 4 533 6 534 3 535 2 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4 720 3 721 2 722 2 723 2 725 2 726 1 727 4 728 3 729 1 733 1 734 4 736 1 737 1 738 1 742 1 743 1 744 1 745 2 747 1 748 3 749 1 751 1 752 1 753 1 754 4 755 2 756 1 757 2 759 3 760 3 763 1 764 2 765 1 767 3 768 1 771 4 772 2 773 4 774 2 775 1 776 2 777 1 778 1 779 1 781 4 784 1 785 2 787 1 788 1 789 2 790 2 792 1 793 2 794 2 795 3 797 1 799 2 802 1 803 1 805 2 806 1 808 2 809 2 810 1 814 1 815 1 817 1 818 3 821 1 822 5 823 2 825 2 826 2 827 2 828 1 830 3 831 1 832 1 833 2 835 2 836 1 839 1 840 3 843 1 844 3 845 1 846 1 848 1 851 1 854 1 855 1 857 2 859 1 860 1 861 1 862 1 864 1 865 4 871 2 872 1 874 1 877 1 878 1 884 1 885 3 886 4 888 1 889 1 890 1 891 2 896 1 897 1 902 2 903 1 904 1 908 1 909 1 910 1 912 1 913 1 915 1 916 1 917 1 919 1 920 3 922 1 924 1 927 1 928 1 929 2 931 1 932 2 933 2 934 1 938 1 939 1 942 1 946 1 947 1 949 1 950 1 951 1 952 2 953 1 954 2 955 3 960 1 961 1 964 2 965 1 966 1 967 1 968 1 969 2 970 2 971 1 978 1 979 1 980 3 982 1 984 3 985 1 987 1 988 1 990 1 1000 2 1001 1 1002 1 1003 1 1004 3 1010 2 1011 1 1014 2 1015 1 1016 1 1017 2 1018 1 1021 1 1024 2 1026 2 1032 1 1033 1 1035 1 1039 1 1040 1 1044 2 1045 1 1049 1 1056 1 1057 1 1062 1 1063 1 1071 1 1072 2 1074 1 1075 1 1081 1 1089 1 1099 1 1102 1 1107 1 1109 1 1110 1 1111 1 1112 2 1113 1 1123 2 1125 1 1130 1 1132 1 1136 2 1137 2 1145 1 1151 1 1157 1 1159 1 1162 1 1165 1 1166 1 1168 1 1169 1 1170 1 1173 1 1174 1 1186 2 1189 1 1193 1 1195 2 1199 1 1201 1 1204 1 1205 1 1208 1 1217 1 1223 1 1227 1 1233 1 1234 1 1241 1 1242 1 1246 1 1247 1 1248 1 1252 1 1255 1 1257 2 1258 2 1259 1 1260 1 1261 1 1264 1 1273 1 1279 1 1282 1 1295 2 1305 1 1307 1 1316 1 1317 1 1321 1 1325 1 1326 1 1327 1 1329 1 1331 1 1332 1 1339 1 1344 1 1346 1 1361 1 1368 1 1375 1 1391 1 1394 1 1395 1 1397 1 1400 1 1407 2 1409 1 1420 1 1423 1 1425 1 1427 1 1440 1 1450 1 1451 1 1454 1 1456 1 1462 1 1466 1 1467 1 1468 1 1477 1 1481 1 1487 1 1513 1 1541 1 1553 1 1560 1 1568 1 1574 1 1584 1 1588 1 1594 1 1609 1 1632 1 1639 1 1669 1 1689 1 1698 1 1701 1 1704 1 1715 1 1720 1 1727 1 1730 1 1733 1 1742 1 1763 1 1778 1 1836 1 1844 1 1861 1 1865 1 1869 1 1879 1 1880 1 1920 1 1933 1 1949 1 1964 1 1971 1 1974 1 1991 1 2008 2 2081 1 2111 1 2150 1 2175 1 2189 1 2259 1 2263 1 2303 1 2343 1 2428 1 2485 1 2499 1 2517 1 2561 1 2624 1 2788 1 2829 1 2835 1 2868 1 2909 1 3045 1 3302 1 3935 1 4133 1 4234 1 4546 1 4920 1 5075 1 5401 1 6338 1 6507 1 7728 1 17466 1 466444 1 [ESTIMATING YIELD CURVE] [BOOTSTRAPPING HISTOGRAM] ._......._._..............._.._........_._.........__.._...._.......__.. ..._.._....__.........._.__._._....._......._....... [COMPUTING CONFIDENCE INTERVALS] [WRITING OUTPUT]