AIH curated blacklist: matched 5 fusion rows (breakpoint_ID in qualified set)
================================================================================
ARRIBA FILTERING SUMMARY
================================================================================
Total fusions: 46
Pass (FILTER=PASS): 4 (8.7%)
Fail (FILTER=FAIL): 42 (91.3%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 5
All 5 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 13
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 12
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 5
confidence_below_min(medium<high);aih_curated_blacklist: 3
confidence_below_min(medium<high): 2
confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 1
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 1
confidence_below_min(medium<high);total_reads_below_min(7.0<8.0): 1
confidence_below_min(low<high): 1
confidence_below_min(low<high);aih_curated_blacklist: 1
confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 1
confidence_below_min(low<high);total_reads_below_min(3.0<8.0);aih_curated_blacklist: 1
Breakdown by confidence:
high: 4 pass, 0 fail (total: 4)
low: 0 pass, 35 fail (total: 35)
medium: 0 pass, 7 fail (total: 7)
Arriba filter: 46 rows -> 4 PASS; wrote tih_rna_sample_00104_23H5VFLT4_s20.arriba.fusions.filtered.tsv and tih_rna_sample_00104_23H5VFLT4_s20.arriba.fusions.filtered_pass_only.tsv
Summary written to: tih_rna_sample_00104_23H5VFLT4_s20.arriba.fusions.filter_summary.txt