Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT tih_rna_sample_00090_23H5VFLT4_s32.Aligned.sortedByCoord.out.bam --OUTPUT tih_rna_sample_00090_23H5VFLT4_s32.md.bam --METRICS_FILE tih_rna_sample_00090_23H5VFLT4_s32.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:23:41.860 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:23:41 GMT 2026] MarkDuplicates --INPUT tih_rna_sample_00090_23H5VFLT4_s32.Aligned.sortedByCoord.out.bam --OUTPUT tih_rna_sample_00090_23H5VFLT4_s32.md.bam --METRICS_FILE tih_rna_sample_00090_23H5VFLT4_s32.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:23:41 GMT 2026] Executing as ?@nf-71ad1fe12378964732f9277819b1fd7e-10fb8-jbl4g on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:23:41 MarkDuplicates Start of doWork freeMemory: 105492592; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:23:41 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:23:41 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:23:46 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,050,248
INFO 2026-06-08 08:23:46 MarkDuplicates Tracking 1426 as yet unmatched pairs. 413 records in RAM.
INFO 2026-06-08 08:23:49 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:1,339,409
INFO 2026-06-08 08:23:49 MarkDuplicates Tracking 3147 as yet unmatched pairs. 925 records in RAM.
INFO 2026-06-08 08:23:51 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 2s. Last read position: chr1:1,635,813
INFO 2026-06-08 08:23:51 MarkDuplicates Tracking 3395 as yet unmatched pairs. 43 records in RAM.
INFO 2026-06-08 08:23:53 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 2s. Last read position: chr1:2,588,425
INFO 2026-06-08 08:23:53 MarkDuplicates Tracking 5263 as yet unmatched pairs. 852 records in RAM.
INFO 2026-06-08 08:23:56 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 2s. Last read position: chr1:6,207,394
INFO 2026-06-08 08:23:56 MarkDuplicates Tracking 5788 as yet unmatched pairs. 55 records in RAM.
INFO 2026-06-08 08:23:59 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 2s. Last read position: chr1:8,463,412
INFO 2026-06-08 08:23:59 MarkDuplicates Tracking 6920 as yet unmatched pairs. 107 records in RAM.
INFO 2026-06-08 08:24:01 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 2s. Last read position: chr1:10,472,410
INFO 2026-06-08 08:24:01 MarkDuplicates Tracking 7735 as yet unmatched pairs. 6 records in RAM.
INFO 2026-06-08 08:24:03 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 1s. Last read position: chr1:11,966,280
INFO 2026-06-08 08:24:03 MarkDuplicates Tracking 9243 as yet unmatched pairs. 315 records in RAM.
INFO 2026-06-08 08:24:05 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 2s. Last read position: chr1:15,934,546
INFO 2026-06-08 08:24:05 MarkDuplicates Tracking 9939 as yet unmatched pairs. 188 records in RAM.
INFO 2026-06-08 08:24:07 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 2s. Last read position: chr1:16,968,357
INFO 2026-06-08 08:24:07 MarkDuplicates Tracking 10763 as yet unmatched pairs. 158 records in RAM.
INFO 2026-06-08 08:24:09 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 2s. Last read position: chr1:19,141,670
INFO 2026-06-08 08:24:09 MarkDuplicates Tracking 11990 as yet unmatched pairs. 357 records in RAM.
INFO 2026-06-08 08:24:12 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 2s. Last read position: chr1:20,500,723
INFO 2026-06-08 08:24:12 MarkDuplicates Tracking 12704 as yet unmatched pairs. 151 records in RAM.
INFO 2026-06-08 08:24:13 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 1s. Last read position: chr1:21,880,701
INFO 2026-06-08 08:24:13 MarkDuplicates Tracking 13797 as yet unmatched pairs. 288 records in RAM.
INFO 2026-06-08 08:24:15 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 1s. Last read position: chr1:22,910,426
INFO 2026-06-08 08:24:15 MarkDuplicates Tracking 15195 as yet unmatched pairs. 674 records in RAM.
INFO 2026-06-08 08:24:17 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:25,352,956
INFO 2026-06-08 08:24:17 MarkDuplicates Tracking 15503 as yet unmatched pairs. 173 records in RAM.
INFO 2026-06-08 08:24:19 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 1s. Last read position: chr1:26,780,392
INFO 2026-06-08 08:24:19 MarkDuplicates Tracking 16439 as yet unmatched pairs. 279 records in RAM.
INFO 2026-06-08 08:24:22 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 2s. Last read position: chr1:28,480,497
INFO 2026-06-08 08:24:22 MarkDuplicates Tracking 17158 as yet unmatched pairs. 54 records in RAM.
INFO 2026-06-08 08:24:24 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 2s. Last read position: chr1:31,697,038
INFO 2026-06-08 08:24:24 MarkDuplicates Tracking 17996 as yet unmatched pairs. 55 records in RAM.
INFO 2026-06-08 08:24:26 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:32,770,447
INFO 2026-06-08 08:24:26 MarkDuplicates Tracking 19581 as yet unmatched pairs. 700 records in RAM.
INFO 2026-06-08 08:24:28 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 2s. Last read position: chr1:35,192,501
INFO 2026-06-08 08:24:28 MarkDuplicates Tracking 20518 as yet unmatched pairs. 543 records in RAM.
INFO 2026-06-08 08:24:30 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 1s. Last read position: chr1:37,482,809
INFO 2026-06-08 08:24:30 MarkDuplicates Tracking 21453 as yet unmatched pairs. 514 records in RAM.
INFO 2026-06-08 08:24:32 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:39,626,855
INFO 2026-06-08 08:24:32 MarkDuplicates Tracking 22125 as yet unmatched pairs. 161 records in RAM.
INFO 2026-06-08 08:24:34 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 2s. Last read position: chr1:42,930,835
INFO 2026-06-08 08:24:34 MarkDuplicates Tracking 23012 as yet unmatched pairs. 165 records in RAM.
INFO 2026-06-08 08:24:35 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:44,000,796
INFO 2026-06-08 08:24:35 MarkDuplicates Tracking 23860 as yet unmatched pairs. 53 records in RAM.
INFO 2026-06-08 08:24:37 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:46,034,651
INFO 2026-06-08 08:24:37 MarkDuplicates Tracking 24928 as yet unmatched pairs. 215 records in RAM.
INFO 2026-06-08 08:24:40 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 2s. Last read position: chr1:51,794,496
INFO 2026-06-08 08:24:40 MarkDuplicates Tracking 25896 as yet unmatched pairs. 219 records in RAM.
INFO 2026-06-08 08:24:41 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:55,061,400
INFO 2026-06-08 08:24:41 MarkDuplicates Tracking 26970 as yet unmatched pairs. 366 records in RAM.
INFO 2026-06-08 08:24:43 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:68,494,630
INFO 2026-06-08 08:24:43 MarkDuplicates Tracking 27354 as yet unmatched pairs. 34 records in RAM.
INFO 2026-06-08 08:24:46 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 2s. Last read position: chr1:89,845,414
INFO 2026-06-08 08:24:46 MarkDuplicates Tracking 28132 as yet unmatched pairs. 44 records in RAM.
INFO 2026-06-08 08:24:48 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 2s. Last read position: chr1:108,693,513
INFO 2026-06-08 08:24:48 MarkDuplicates Tracking 29003 as yet unmatched pairs. 100 records in RAM.
INFO 2026-06-08 08:24:51 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 2s. Last read position: chr1:109,761,517
INFO 2026-06-08 08:24:51 MarkDuplicates Tracking 30283 as yet unmatched pairs. 573 records in RAM.
INFO 2026-06-08 08:24:53 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 2s. Last read position: chr1:113,683,449
INFO 2026-06-08 08:24:53 MarkDuplicates Tracking 30595 as yet unmatched pairs. 44 records in RAM.
INFO 2026-06-08 08:24:55 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:117,607,581
INFO 2026-06-08 08:24:55 MarkDuplicates Tracking 31622 as yet unmatched pairs. 115 records in RAM.
INFO 2026-06-08 08:24:57 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:144,897,140
INFO 2026-06-08 08:24:57 MarkDuplicates Tracking 32254 as yet unmatched pairs. 173 records in RAM.
INFO 2026-06-08 08:24:58 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:148,576,452
INFO 2026-06-08 08:24:58 MarkDuplicates Tracking 32490 as yet unmatched pairs. 24 records in RAM.
INFO 2026-06-08 08:25:00 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:149,842,520
INFO 2026-06-08 08:25:00 MarkDuplicates Tracking 34561 as yet unmatched pairs. 1478 records in RAM.
INFO 2026-06-08 08:25:02 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:150,268,105
INFO 2026-06-08 08:25:02 MarkDuplicates Tracking 34178 as yet unmatched pairs. 590 records in RAM.
INFO 2026-06-08 08:25:04 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 2s. Last read position: chr1:151,264,832
INFO 2026-06-08 08:25:04 MarkDuplicates Tracking 34724 as yet unmatched pairs. 265 records in RAM.
INFO 2026-06-08 08:25:06 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 2s. Last read position: chr1:153,933,608
INFO 2026-06-08 08:25:06 MarkDuplicates Tracking 35916 as yet unmatched pairs. 624 records in RAM.
INFO 2026-06-08 08:25:08 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:154,176,131
INFO 2026-06-08 08:25:08 MarkDuplicates Tracking 42749 as yet unmatched pairs. 6733 records in RAM.
INFO 2026-06-08 08:25:11 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 2s. Last read position: chr1:155,052,728
INFO 2026-06-08 08:25:11 MarkDuplicates Tracking 37677 as yet unmatched pairs. 775 records in RAM.
INFO 2026-06-08 08:25:13 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 2s. Last read position: chr1:155,191,259
INFO 2026-06-08 08:25:13 MarkDuplicates Tracking 37907 as yet unmatched pairs. 287 records in RAM.
INFO 2026-06-08 08:25:15 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:155,763,404
INFO 2026-06-08 08:25:15 MarkDuplicates Tracking 38475 as yet unmatched pairs. 113 records in RAM.
INFO 2026-06-08 08:25:17 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr1:156,136,309
INFO 2026-06-08 08:25:17 MarkDuplicates Tracking 40405 as yet unmatched pairs. 873 records in RAM.
INFO 2026-06-08 08:25:18 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr1:156,671,197
INFO 2026-06-08 08:25:18 MarkDuplicates Tracking 40457 as yet unmatched pairs. 26 records in RAM.
INFO 2026-06-08 08:25:20 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:161,038,533
INFO 2026-06-08 08:25:20 MarkDuplicates Tracking 41736 as yet unmatched pairs. 468 records in RAM.
INFO 2026-06-08 08:25:22 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:167,073,384
INFO 2026-06-08 08:25:22 MarkDuplicates Tracking 43783 as yet unmatched pairs. 1740 records in RAM.
INFO 2026-06-08 08:25:24 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr1:171,557,728
INFO 2026-06-08 08:25:24 MarkDuplicates Tracking 43319 as yet unmatched pairs. 399 records in RAM.
INFO 2026-06-08 08:25:26 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr1:182,600,295
INFO 2026-06-08 08:25:26 MarkDuplicates Tracking 44183 as yet unmatched pairs. 360 records in RAM.
INFO 2026-06-08 08:25:28 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr1:200,409,361
INFO 2026-06-08 08:25:28 MarkDuplicates Tracking 44580 as yet unmatched pairs. 46 records in RAM.
INFO 2026-06-08 08:25:30 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr1:202,808,146
INFO 2026-06-08 08:25:30 MarkDuplicates Tracking 45749 as yet unmatched pairs. 333 records in RAM.
INFO 2026-06-08 08:25:32 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr1:206,603,012
INFO 2026-06-08 08:25:32 MarkDuplicates Tracking 46424 as yet unmatched pairs. 209 records in RAM.
INFO 2026-06-08 08:25:34 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 2s. Last read position: chr1:206,934,630
INFO 2026-06-08 08:25:34 MarkDuplicates Tracking 50682 as yet unmatched pairs. 3669 records in RAM.
INFO 2026-06-08 08:25:36 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr1:206,939,454
INFO 2026-06-08 08:25:36 MarkDuplicates Tracking 52448 as yet unmatched pairs. 4622 records in RAM.
INFO 2026-06-08 08:25:38 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 1s. Last read position: chr1:214,383,620
INFO 2026-06-08 08:25:38 MarkDuplicates Tracking 48731 as yet unmatched pairs. 39 records in RAM.
INFO 2026-06-08 08:25:40 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 2s. Last read position: chr1:225,859,211
INFO 2026-06-08 08:25:40 MarkDuplicates Tracking 49575 as yet unmatched pairs. 194 records in RAM.
INFO 2026-06-08 08:25:42 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr1:228,396,966
INFO 2026-06-08 08:25:42 MarkDuplicates Tracking 51127 as yet unmatched pairs. 725 records in RAM.
INFO 2026-06-08 08:25:44 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 1s. Last read position: chr1:234,608,673
INFO 2026-06-08 08:25:44 MarkDuplicates Tracking 52657 as yet unmatched pairs. 1043 records in RAM.
INFO 2026-06-08 08:25:45 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr1:245,156,475
INFO 2026-06-08 08:25:45 MarkDuplicates Tracking 52694 as yet unmatched pairs. 95 records in RAM.
INFO 2026-06-08 08:25:48 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 2s. Last read position: chr2:9,630,249
INFO 2026-06-08 08:25:48 MarkDuplicates Tracking 53934 as yet unmatched pairs. 53069 records in RAM.
INFO 2026-06-08 08:25:50 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr2:20,204,165
INFO 2026-06-08 08:25:50 MarkDuplicates Tracking 55308 as yet unmatched pairs. 54421 records in RAM.
INFO 2026-06-08 08:25:52 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:27,082,830
INFO 2026-06-08 08:25:52 MarkDuplicates Tracking 55432 as yet unmatched pairs. 54513 records in RAM.
INFO 2026-06-08 08:25:54 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 2s. Last read position: chr2:28,393,700
INFO 2026-06-08 08:25:54 MarkDuplicates Tracking 56197 as yet unmatched pairs. 55267 records in RAM.
INFO 2026-06-08 08:25:56 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:25:56 MarkDuplicates Tracking 120609 as yet unmatched pairs. 51497 records in RAM.
INFO 2026-06-08 08:25:58 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:25:58 MarkDuplicates Tracking 513336 as yet unmatched pairs. 26480 records in RAM.
INFO 2026-06-08 08:26:00 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 2s. Last read position: chr2:38,343,458
INFO 2026-06-08 08:26:00 MarkDuplicates Tracking 547376 as yet unmatched pairs. 24185 records in RAM.
INFO 2026-06-08 08:26:02 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr2:43,963,640
INFO 2026-06-08 08:26:02 MarkDuplicates Tracking 546272 as yet unmatched pairs. 23071 records in RAM.
INFO 2026-06-08 08:26:04 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 2s. Last read position: chr2:54,628,961
INFO 2026-06-08 08:26:04 MarkDuplicates Tracking 546420 as yet unmatched pairs. 23209 records in RAM.
INFO 2026-06-08 08:26:06 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 2s. Last read position: chr2:61,188,114
INFO 2026-06-08 08:26:06 MarkDuplicates Tracking 544396 as yet unmatched pairs. 21172 records in RAM.
INFO 2026-06-08 08:26:08 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:69,984,157
INFO 2026-06-08 08:26:08 MarkDuplicates Tracking 543570 as yet unmatched pairs. 20330 records in RAM.
INFO 2026-06-08 08:26:10 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 2s. Last read position: chr2:74,422,766
INFO 2026-06-08 08:26:10 MarkDuplicates Tracking 542771 as yet unmatched pairs. 19519 records in RAM.
INFO 2026-06-08 08:26:13 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 2s. Last read position: chr2:79,086,883
INFO 2026-06-08 08:26:13 MarkDuplicates Tracking 542969 as yet unmatched pairs. 19706 records in RAM.
INFO 2026-06-08 08:26:15 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 2s. Last read position: chr2:85,698,626
INFO 2026-06-08 08:26:15 MarkDuplicates Tracking 541039 as yet unmatched pairs. 17764 records in RAM.
INFO 2026-06-08 08:26:17 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:96,186,860
INFO 2026-06-08 08:26:17 MarkDuplicates Tracking 540623 as yet unmatched pairs. 17340 records in RAM.
INFO 2026-06-08 08:26:19 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:98,555,637
INFO 2026-06-08 08:26:19 MarkDuplicates Tracking 539645 as yet unmatched pairs. 16356 records in RAM.
INFO 2026-06-08 08:26:21 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 2s. Last read position: chr2:108,735,740
INFO 2026-06-08 08:26:21 MarkDuplicates Tracking 538737 as yet unmatched pairs. 15420 records in RAM.
INFO 2026-06-08 08:26:23 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 2s. Last read position: chr2:112,563,865
INFO 2026-06-08 08:26:23 MarkDuplicates Tracking 538157 as yet unmatched pairs. 14823 records in RAM.
INFO 2026-06-08 08:26:25 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr2:127,626,968
INFO 2026-06-08 08:26:25 MarkDuplicates Tracking 537461 as yet unmatched pairs. 14119 records in RAM.
INFO 2026-06-08 08:26:27 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr2:131,724,118
INFO 2026-06-08 08:26:27 MarkDuplicates Tracking 536449 as yet unmatched pairs. 13104 records in RAM.
INFO 2026-06-08 08:26:29 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr2:160,298,062
INFO 2026-06-08 08:26:29 MarkDuplicates Tracking 535768 as yet unmatched pairs. 12404 records in RAM.
INFO 2026-06-08 08:26:30 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:173,221,378
INFO 2026-06-08 08:26:30 MarkDuplicates Tracking 535043 as yet unmatched pairs. 11664 records in RAM.
INFO 2026-06-08 08:26:32 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr2:188,984,897
INFO 2026-06-08 08:26:32 MarkDuplicates Tracking 534612 as yet unmatched pairs. 11213 records in RAM.
INFO 2026-06-08 08:26:34 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 2s. Last read position: chr2:189,010,786
INFO 2026-06-08 08:26:34 MarkDuplicates Tracking 533473 as yet unmatched pairs. 10061 records in RAM.
INFO 2026-06-08 08:26:36 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 2s. Last read position: chr2:197,489,109
INFO 2026-06-08 08:26:36 MarkDuplicates Tracking 532654 as yet unmatched pairs. 9225 records in RAM.
INFO 2026-06-08 08:26:38 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr2:206,004,511
INFO 2026-06-08 08:26:38 MarkDuplicates Tracking 531767 as yet unmatched pairs. 8315 records in RAM.
INFO 2026-06-08 08:26:40 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:215,375,246
INFO 2026-06-08 08:26:40 MarkDuplicates Tracking 532555 as yet unmatched pairs. 9099 records in RAM.
INFO 2026-06-08 08:26:42 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 2s. Last read position: chr2:215,422,188
INFO 2026-06-08 08:26:42 MarkDuplicates Tracking 530994 as yet unmatched pairs. 7532 records in RAM.
INFO 2026-06-08 08:26:44 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 2s. Last read position: chr2:218,280,043
INFO 2026-06-08 08:26:44 MarkDuplicates Tracking 529656 as yet unmatched pairs. 6189 records in RAM.
INFO 2026-06-08 08:26:46 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr2:219,374,289
INFO 2026-06-08 08:26:46 MarkDuplicates Tracking 529393 as yet unmatched pairs. 5908 records in RAM.
INFO 2026-06-08 08:26:48 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr2:230,370,913
INFO 2026-06-08 08:26:48 MarkDuplicates Tracking 527779 as yet unmatched pairs. 4231 records in RAM.
INFO 2026-06-08 08:26:50 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 2s. Last read position: chr2:231,712,442
INFO 2026-06-08 08:26:50 MarkDuplicates Tracking 528120 as yet unmatched pairs. 4565 records in RAM.
INFO 2026-06-08 08:26:52 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr2:237,334,626
INFO 2026-06-08 08:26:52 MarkDuplicates Tracking 526467 as yet unmatched pairs. 2872 records in RAM.
INFO 2026-06-08 08:26:54 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 2s. Last read position: chr2:239,115,120
INFO 2026-06-08 08:26:54 MarkDuplicates Tracking 525307 as yet unmatched pairs. 1709 records in RAM.
INFO 2026-06-08 08:26:56 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 2s. Last read position: chr2:241,346,222
INFO 2026-06-08 08:26:56 MarkDuplicates Tracking 524600 as yet unmatched pairs. 989 records in RAM.
INFO 2026-06-08 08:26:58 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 2s. Last read position: chr3:9,473,296
INFO 2026-06-08 08:26:58 MarkDuplicates Tracking 523607 as yet unmatched pairs. 22233 records in RAM.
INFO 2026-06-08 08:27:00 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr3:12,584,863
INFO 2026-06-08 08:27:00 MarkDuplicates Tracking 522403 as yet unmatched pairs. 21012 records in RAM.
INFO 2026-06-08 08:27:02 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 2s. Last read position: chr3:15,738,554
INFO 2026-06-08 08:27:02 MarkDuplicates Tracking 521868 as yet unmatched pairs. 20451 records in RAM.
INFO 2026-06-08 08:27:04 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr3:31,533,227
INFO 2026-06-08 08:27:04 MarkDuplicates Tracking 521366 as yet unmatched pairs. 19932 records in RAM.
INFO 2026-06-08 08:27:06 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr3:39,335,629
INFO 2026-06-08 08:27:06 MarkDuplicates Tracking 520160 as yet unmatched pairs. 18715 records in RAM.
INFO 2026-06-08 08:27:08 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr3:43,561,342
INFO 2026-06-08 08:27:08 MarkDuplicates Tracking 519537 as yet unmatched pairs. 18075 records in RAM.
INFO 2026-06-08 08:27:10 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr3:47,340,556
INFO 2026-06-08 08:27:10 MarkDuplicates Tracking 518695 as yet unmatched pairs. 17217 records in RAM.
INFO 2026-06-08 08:27:12 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr3:48,419,598
INFO 2026-06-08 08:27:12 MarkDuplicates Tracking 518470 as yet unmatched pairs. 16983 records in RAM.
INFO 2026-06-08 08:27:14 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 2s. Last read position: chr3:48,694,173
INFO 2026-06-08 08:27:14 MarkDuplicates Tracking 517413 as yet unmatched pairs. 15907 records in RAM.
INFO 2026-06-08 08:27:16 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr3:49,132,585
INFO 2026-06-08 08:27:16 MarkDuplicates Tracking 516277 as yet unmatched pairs. 14771 records in RAM.
INFO 2026-06-08 08:27:18 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 2s. Last read position: chr3:49,895,528
INFO 2026-06-08 08:27:18 MarkDuplicates Tracking 515791 as yet unmatched pairs. 14267 records in RAM.
INFO 2026-06-08 08:27:20 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr3:51,600,892
INFO 2026-06-08 08:27:20 MarkDuplicates Tracking 514211 as yet unmatched pairs. 12670 records in RAM.
INFO 2026-06-08 08:27:22 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr3:52,492,157
INFO 2026-06-08 08:27:22 MarkDuplicates Tracking 513698 as yet unmatched pairs. 12145 records in RAM.
INFO 2026-06-08 08:27:24 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 2s. Last read position: chr3:57,831,448
INFO 2026-06-08 08:27:24 MarkDuplicates Tracking 512602 as yet unmatched pairs. 11033 records in RAM.
INFO 2026-06-08 08:27:26 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr3:66,384,164
INFO 2026-06-08 08:27:26 MarkDuplicates Tracking 512018 as yet unmatched pairs. 10438 records in RAM.
INFO 2026-06-08 08:27:27 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr3:100,748,201
INFO 2026-06-08 08:27:27 MarkDuplicates Tracking 511409 as yet unmatched pairs. 9800 records in RAM.
INFO 2026-06-08 08:27:30 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 2s. Last read position: chr3:121,460,476
INFO 2026-06-08 08:27:30 MarkDuplicates Tracking 510138 as yet unmatched pairs. 8510 records in RAM.
INFO 2026-06-08 08:27:32 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 2s. Last read position: chr3:126,704,390
INFO 2026-06-08 08:27:32 MarkDuplicates Tracking 509473 as yet unmatched pairs. 7818 records in RAM.
INFO 2026-06-08 08:27:34 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr3:129,171,227
INFO 2026-06-08 08:27:34 MarkDuplicates Tracking 510791 as yet unmatched pairs. 9100 records in RAM.
INFO 2026-06-08 08:27:36 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 2s. Last read position: chr3:136,293,840
INFO 2026-06-08 08:27:36 MarkDuplicates Tracking 507697 as yet unmatched pairs. 5993 records in RAM.
INFO 2026-06-08 08:27:38 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr3:153,162,668
INFO 2026-06-08 08:27:38 MarkDuplicates Tracking 506792 as yet unmatched pairs. 5069 records in RAM.
INFO 2026-06-08 08:27:40 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 2s. Last read position: chr3:172,352,834
INFO 2026-06-08 08:27:40 MarkDuplicates Tracking 506329 as yet unmatched pairs. 4584 records in RAM.
INFO 2026-06-08 08:27:43 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 2s. Last read position: chr3:184,315,842
INFO 2026-06-08 08:27:43 MarkDuplicates Tracking 506815 as yet unmatched pairs. 5041 records in RAM.
INFO 2026-06-08 08:27:45 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 2s. Last read position: chr3:186,801,502
INFO 2026-06-08 08:27:45 MarkDuplicates Tracking 504476 as yet unmatched pairs. 2690 records in RAM.
INFO 2026-06-08 08:27:46 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr3:195,774,178
INFO 2026-06-08 08:27:46 MarkDuplicates Tracking 504969 as yet unmatched pairs. 3152 records in RAM.
INFO 2026-06-08 08:27:48 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr3:195,781,570
INFO 2026-06-08 08:27:48 MarkDuplicates Tracking 505638 as yet unmatched pairs. 3816 records in RAM.
INFO 2026-06-08 08:27:50 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr3:195,785,613
INFO 2026-06-08 08:27:50 MarkDuplicates Tracking 505234 as yet unmatched pairs. 3405 records in RAM.
INFO 2026-06-08 08:27:51 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr3:196,052,097
INFO 2026-06-08 08:27:51 MarkDuplicates Tracking 503528 as yet unmatched pairs. 1693 records in RAM.
INFO 2026-06-08 08:27:53 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 2s. Last read position: chr4:868,582
INFO 2026-06-08 08:27:53 MarkDuplicates Tracking 501833 as yet unmatched pairs. 12012 records in RAM.
INFO 2026-06-08 08:27:55 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr4:1,720,698
INFO 2026-06-08 08:27:55 MarkDuplicates Tracking 500748 as yet unmatched pairs. 10896 records in RAM.
INFO 2026-06-08 08:27:57 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 2s. Last read position: chr4:2,247,626
INFO 2026-06-08 08:27:57 MarkDuplicates Tracking 499514 as yet unmatched pairs. 9647 records in RAM.
INFO 2026-06-08 08:27:59 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 2s. Last read position: chr4:4,274,412
INFO 2026-06-08 08:27:59 MarkDuplicates Tracking 498648 as yet unmatched pairs. 8770 records in RAM.
INFO 2026-06-08 08:28:01 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr4:15,625,551
INFO 2026-06-08 08:28:01 MarkDuplicates Tracking 497932 as yet unmatched pairs. 8033 records in RAM.
INFO 2026-06-08 08:28:03 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr4:39,866,950
INFO 2026-06-08 08:28:03 MarkDuplicates Tracking 497092 as yet unmatched pairs. 7175 records in RAM.
INFO 2026-06-08 08:28:05 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 2s. Last read position: chr4:55,607,438
INFO 2026-06-08 08:28:05 MarkDuplicates Tracking 496266 as yet unmatched pairs. 6329 records in RAM.
INFO 2026-06-08 08:28:07 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr4:73,869,524
INFO 2026-06-08 08:28:07 MarkDuplicates Tracking 498270 as yet unmatched pairs. 8327 records in RAM.
INFO 2026-06-08 08:28:08 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr4:76,778,889
INFO 2026-06-08 08:28:08 MarkDuplicates Tracking 494861 as yet unmatched pairs. 4900 records in RAM.
INFO 2026-06-08 08:28:11 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 2s. Last read position: chr4:88,781,330
INFO 2026-06-08 08:28:11 MarkDuplicates Tracking 493575 as yet unmatched pairs. 3597 records in RAM.
INFO 2026-06-08 08:28:13 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr4:112,263,023
INFO 2026-06-08 08:28:13 MarkDuplicates Tracking 492867 as yet unmatched pairs. 2865 records in RAM.
INFO 2026-06-08 08:28:15 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 2s. Last read position: chr4:141,636,681
INFO 2026-06-08 08:28:15 MarkDuplicates Tracking 492248 as yet unmatched pairs. 2231 records in RAM.
INFO 2026-06-08 08:28:17 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 2s. Last read position: chr4:153,295,531
INFO 2026-06-08 08:28:17 MarkDuplicates Tracking 491488 as yet unmatched pairs. 1461 records in RAM.
INFO 2026-06-08 08:28:19 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 2s. Last read position: chr4:185,403,519
INFO 2026-06-08 08:28:19 MarkDuplicates Tracking 490521 as yet unmatched pairs. 474 records in RAM.
INFO 2026-06-08 08:28:21 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr5:891,834
INFO 2026-06-08 08:28:21 MarkDuplicates Tracking 489726 as yet unmatched pairs. 21530 records in RAM.
INFO 2026-06-08 08:28:23 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr5:10,748,189
INFO 2026-06-08 08:28:23 MarkDuplicates Tracking 489085 as yet unmatched pairs. 20863 records in RAM.
INFO 2026-06-08 08:28:25 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 2s. Last read position: chr5:14,488,100
INFO 2026-06-08 08:28:25 MarkDuplicates Tracking 488299 as yet unmatched pairs. 20066 records in RAM.
INFO 2026-06-08 08:28:27 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr5:37,139,726
INFO 2026-06-08 08:28:27 MarkDuplicates Tracking 486976 as yet unmatched pairs. 18728 records in RAM.
INFO 2026-06-08 08:28:29 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr5:64,971,731
INFO 2026-06-08 08:28:29 MarkDuplicates Tracking 486326 as yet unmatched pairs. 18063 records in RAM.
INFO 2026-06-08 08:28:30 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr5:74,718,921
INFO 2026-06-08 08:28:30 MarkDuplicates Tracking 485715 as yet unmatched pairs. 17443 records in RAM.
INFO 2026-06-08 08:28:32 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr5:93,683,147
INFO 2026-06-08 08:28:32 MarkDuplicates Tracking 485185 as yet unmatched pairs. 16888 records in RAM.
INFO 2026-06-08 08:28:34 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 2s. Last read position: chr5:114,362,308
INFO 2026-06-08 08:28:34 MarkDuplicates Tracking 484113 as yet unmatched pairs. 15812 records in RAM.
INFO 2026-06-08 08:28:36 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr5:128,134,258
INFO 2026-06-08 08:28:36 MarkDuplicates Tracking 483687 as yet unmatched pairs. 15367 records in RAM.
INFO 2026-06-08 08:28:38 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr5:134,544,266
INFO 2026-06-08 08:28:38 MarkDuplicates Tracking 481964 as yet unmatched pairs. 13629 records in RAM.
INFO 2026-06-08 08:28:40 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr5:138,573,767
INFO 2026-06-08 08:28:40 MarkDuplicates Tracking 481702 as yet unmatched pairs. 13357 records in RAM.
INFO 2026-06-08 08:28:42 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr5:140,705,687
INFO 2026-06-08 08:28:42 MarkDuplicates Tracking 480376 as yet unmatched pairs. 11918 records in RAM.
INFO 2026-06-08 08:28:44 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr5:145,819,966
INFO 2026-06-08 08:28:44 MarkDuplicates Tracking 479642 as yet unmatched pairs. 11169 records in RAM.
INFO 2026-06-08 08:28:46 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 2s. Last read position: chr5:150,132,779
INFO 2026-06-08 08:28:46 MarkDuplicates Tracking 479167 as yet unmatched pairs. 10685 records in RAM.
INFO 2026-06-08 08:28:48 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 2s. Last read position: chr5:150,402,203
INFO 2026-06-08 08:28:48 MarkDuplicates Tracking 515455 as yet unmatched pairs. 46963 records in RAM.
INFO 2026-06-08 08:28:51 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 2s. Last read position: chr5:150,403,295
INFO 2026-06-08 08:28:51 MarkDuplicates Tracking 496026 as yet unmatched pairs. 27528 records in RAM.
INFO 2026-06-08 08:28:53 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 2s. Last read position: chr5:150,405,152
INFO 2026-06-08 08:28:53 MarkDuplicates Tracking 497941 as yet unmatched pairs. 29443 records in RAM.
INFO 2026-06-08 08:28:55 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 2s. Last read position: chr5:150,407,233
INFO 2026-06-08 08:28:55 MarkDuplicates Tracking 484013 as yet unmatched pairs. 15507 records in RAM.
INFO 2026-06-08 08:28:57 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr5:154,446,681
INFO 2026-06-08 08:28:57 MarkDuplicates Tracking 474584 as yet unmatched pairs. 6067 records in RAM.
INFO 2026-06-08 08:28:59 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr5:168,455,406
INFO 2026-06-08 08:28:59 MarkDuplicates Tracking 473792 as yet unmatched pairs. 5262 records in RAM.
INFO 2026-06-08 08:29:01 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 2s. Last read position: chr5:171,876,423
INFO 2026-06-08 08:29:01 MarkDuplicates Tracking 473209 as yet unmatched pairs. 4666 records in RAM.
INFO 2026-06-08 08:29:03 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr5:177,269,651
INFO 2026-06-08 08:29:03 MarkDuplicates Tracking 472404 as yet unmatched pairs. 3853 records in RAM.
INFO 2026-06-08 08:29:05 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 2s. Last read position: chr5:178,204,972
INFO 2026-06-08 08:29:05 MarkDuplicates Tracking 471686 as yet unmatched pairs. 3127 records in RAM.
INFO 2026-06-08 08:29:07 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr5:179,799,202
INFO 2026-06-08 08:29:07 MarkDuplicates Tracking 470837 as yet unmatched pairs. 2267 records in RAM.
INFO 2026-06-08 08:29:09 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 2s. Last read position: chr5:179,863,919
INFO 2026-06-08 08:29:09 MarkDuplicates Tracking 469418 as yet unmatched pairs. 838 records in RAM.
INFO 2026-06-08 08:29:11 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 2s. Last read position: chr6:1,959,866
INFO 2026-06-08 08:29:11 MarkDuplicates Tracking 468795 as yet unmatched pairs. 26763 records in RAM.
INFO 2026-06-08 08:29:13 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 2s. Last read position: chr6:7,229,873
INFO 2026-06-08 08:29:13 MarkDuplicates Tracking 468175 as yet unmatched pairs. 26117 records in RAM.
INFO 2026-06-08 08:29:16 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 2s. Last read position: chr6:10,749,224
INFO 2026-06-08 08:29:16 MarkDuplicates Tracking 466908 as yet unmatched pairs. 24840 records in RAM.
INFO 2026-06-08 08:29:18 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 2s. Last read position: chr6:21,595,750
INFO 2026-06-08 08:29:18 MarkDuplicates Tracking 466364 as yet unmatched pairs. 24251 records in RAM.
INFO 2026-06-08 08:29:20 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr6:26,199,770
INFO 2026-06-08 08:29:20 MarkDuplicates Tracking 465114 as yet unmatched pairs. 22995 records in RAM.
INFO 2026-06-08 08:29:21 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr6:27,810,289
INFO 2026-06-08 08:29:21 MarkDuplicates Tracking 465246 as yet unmatched pairs. 23120 records in RAM.
INFO 2026-06-08 08:29:23 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr6:29,943,275
INFO 2026-06-08 08:29:23 MarkDuplicates Tracking 464690 as yet unmatched pairs. 22559 records in RAM.
INFO 2026-06-08 08:29:25 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr6:30,590,168
INFO 2026-06-08 08:29:25 MarkDuplicates Tracking 462667 as yet unmatched pairs. 20530 records in RAM.
INFO 2026-06-08 08:29:27 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 2s. Last read position: chr6:31,154,531
INFO 2026-06-08 08:29:27 MarkDuplicates Tracking 461832 as yet unmatched pairs. 19692 records in RAM.
INFO 2026-06-08 08:29:29 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr6:31,625,253
INFO 2026-06-08 08:29:29 MarkDuplicates Tracking 461438 as yet unmatched pairs. 19283 records in RAM.
INFO 2026-06-08 08:29:32 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 2s. Last read position: chr6:31,669,408
INFO 2026-06-08 08:29:32 MarkDuplicates Tracking 460285 as yet unmatched pairs. 18122 records in RAM.
INFO 2026-06-08 08:29:34 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 2s. Last read position: chr6:31,817,342
INFO 2026-06-08 08:29:34 MarkDuplicates Tracking 459421 as yet unmatched pairs. 17256 records in RAM.
INFO 2026-06-08 08:29:36 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr6:31,888,086
INFO 2026-06-08 08:29:36 MarkDuplicates Tracking 459013 as yet unmatched pairs. 16839 records in RAM.
INFO 2026-06-08 08:29:38 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr6:32,443,216
INFO 2026-06-08 08:29:38 MarkDuplicates Tracking 459686 as yet unmatched pairs. 17500 records in RAM.
INFO 2026-06-08 08:29:40 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr6:32,837,971
INFO 2026-06-08 08:29:40 MarkDuplicates Tracking 458109 as yet unmatched pairs. 15920 records in RAM.
INFO 2026-06-08 08:29:42 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 2s. Last read position: chr6:32,950,626
INFO 2026-06-08 08:29:42 MarkDuplicates Tracking 456443 as yet unmatched pairs. 14251 records in RAM.
INFO 2026-06-08 08:29:44 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 2s. Last read position: chr6:33,301,650
INFO 2026-06-08 08:29:44 MarkDuplicates Tracking 455422 as yet unmatched pairs. 13220 records in RAM.
INFO 2026-06-08 08:29:46 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 2s. Last read position: chr6:33,667,278
INFO 2026-06-08 08:29:46 MarkDuplicates Tracking 454641 as yet unmatched pairs. 12430 records in RAM.
INFO 2026-06-08 08:29:48 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr6:35,469,000
INFO 2026-06-08 08:29:48 MarkDuplicates Tracking 453653 as yet unmatched pairs. 11428 records in RAM.
INFO 2026-06-08 08:29:50 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 2s. Last read position: chr6:41,591,186
INFO 2026-06-08 08:29:50 MarkDuplicates Tracking 452783 as yet unmatched pairs. 10549 records in RAM.
INFO 2026-06-08 08:29:52 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 2s. Last read position: chr6:43,432,140
INFO 2026-06-08 08:29:52 MarkDuplicates Tracking 451968 as yet unmatched pairs. 9714 records in RAM.
INFO 2026-06-08 08:29:54 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 2s. Last read position: chr6:44,255,073
INFO 2026-06-08 08:29:54 MarkDuplicates Tracking 450959 as yet unmatched pairs. 8693 records in RAM.
INFO 2026-06-08 08:29:56 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 2s. Last read position: chr6:57,930,139
INFO 2026-06-08 08:29:56 MarkDuplicates Tracking 449954 as yet unmatched pairs. 7664 records in RAM.
INFO 2026-06-08 08:29:58 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 2s. Last read position: chr6:85,471,403
INFO 2026-06-08 08:29:58 MarkDuplicates Tracking 449459 as yet unmatched pairs. 7152 records in RAM.
INFO 2026-06-08 08:30:00 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr6:106,512,756
INFO 2026-06-08 08:30:00 MarkDuplicates Tracking 448947 as yet unmatched pairs. 6605 records in RAM.
INFO 2026-06-08 08:30:02 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr6:116,279,607
INFO 2026-06-08 08:30:02 MarkDuplicates Tracking 447863 as yet unmatched pairs. 5502 records in RAM.
INFO 2026-06-08 08:30:04 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr6:135,185,928
INFO 2026-06-08 08:30:04 MarkDuplicates Tracking 448268 as yet unmatched pairs. 5899 records in RAM.
INFO 2026-06-08 08:30:06 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr6:143,507,267
INFO 2026-06-08 08:30:06 MarkDuplicates Tracking 446074 as yet unmatched pairs. 3689 records in RAM.
INFO 2026-06-08 08:30:08 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 2s. Last read position: chr6:156,779,128
INFO 2026-06-08 08:30:08 MarkDuplicates Tracking 445178 as yet unmatched pairs. 2785 records in RAM.
INFO 2026-06-08 08:30:10 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr6:158,783,545
INFO 2026-06-08 08:30:10 MarkDuplicates Tracking 446472 as yet unmatched pairs. 4075 records in RAM.
INFO 2026-06-08 08:30:12 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr6:166,439,655
INFO 2026-06-08 08:30:12 MarkDuplicates Tracking 443444 as yet unmatched pairs. 1032 records in RAM.
INFO 2026-06-08 08:30:14 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr6:170,535,378
INFO 2026-06-08 08:30:14 MarkDuplicates Tracking 442665 as yet unmatched pairs. 225 records in RAM.
INFO 2026-06-08 08:30:16 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 2s. Last read position: chr7:1,470,561
INFO 2026-06-08 08:30:16 MarkDuplicates Tracking 442617 as yet unmatched pairs. 27129 records in RAM.
INFO 2026-06-08 08:30:18 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 2s. Last read position: chr7:2,540,941
INFO 2026-06-08 08:30:18 MarkDuplicates Tracking 440746 as yet unmatched pairs. 25243 records in RAM.
INFO 2026-06-08 08:30:20 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr7:5,352,081
INFO 2026-06-08 08:30:20 MarkDuplicates Tracking 439374 as yet unmatched pairs. 23843 records in RAM.
INFO 2026-06-08 08:30:22 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 2s. Last read position: chr7:5,528,067
INFO 2026-06-08 08:30:22 MarkDuplicates Tracking 441220 as yet unmatched pairs. 25681 records in RAM.
INFO 2026-06-08 08:30:24 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 2s. Last read position: chr7:6,049,912
INFO 2026-06-08 08:30:24 MarkDuplicates Tracking 437275 as yet unmatched pairs. 21718 records in RAM.
INFO 2026-06-08 08:30:26 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 2s. Last read position: chr7:20,122,351
INFO 2026-06-08 08:30:26 MarkDuplicates Tracking 436462 as yet unmatched pairs. 20887 records in RAM.
INFO 2026-06-08 08:30:28 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 2s. Last read position: chr7:30,755,594
INFO 2026-06-08 08:30:28 MarkDuplicates Tracking 435680 as yet unmatched pairs. 20094 records in RAM.
INFO 2026-06-08 08:30:30 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr7:44,112,814
INFO 2026-06-08 08:30:30 MarkDuplicates Tracking 434852 as yet unmatched pairs. 19250 records in RAM.
INFO 2026-06-08 08:30:32 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr7:45,746,716
INFO 2026-06-08 08:30:32 MarkDuplicates Tracking 433827 as yet unmatched pairs. 18209 records in RAM.
INFO 2026-06-08 08:30:34 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr7:56,104,440
INFO 2026-06-08 08:30:34 MarkDuplicates Tracking 433109 as yet unmatched pairs. 17486 records in RAM.
INFO 2026-06-08 08:30:35 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr7:73,044,855
INFO 2026-06-08 08:30:35 MarkDuplicates Tracking 432339 as yet unmatched pairs. 16694 records in RAM.
INFO 2026-06-08 08:30:37 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr7:73,770,025
INFO 2026-06-08 08:30:37 MarkDuplicates Tracking 431601 as yet unmatched pairs. 15951 records in RAM.
INFO 2026-06-08 08:30:38 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr7:75,342,843
INFO 2026-06-08 08:30:38 MarkDuplicates Tracking 430753 as yet unmatched pairs. 15083 records in RAM.
INFO 2026-06-08 08:30:40 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr7:76,329,862
INFO 2026-06-08 08:30:40 MarkDuplicates Tracking 430159 as yet unmatched pairs. 14480 records in RAM.
INFO 2026-06-08 08:30:42 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr7:90,307,774
INFO 2026-06-08 08:30:42 MarkDuplicates Tracking 429291 as yet unmatched pairs. 13600 records in RAM.
INFO 2026-06-08 08:30:44 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr7:94,418,540
INFO 2026-06-08 08:30:44 MarkDuplicates Tracking 430364 as yet unmatched pairs. 14669 records in RAM.
INFO 2026-06-08 08:30:45 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr7:99,358,340
INFO 2026-06-08 08:30:45 MarkDuplicates Tracking 428106 as yet unmatched pairs. 12395 records in RAM.
INFO 2026-06-08 08:30:47 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr7:100,309,028
INFO 2026-06-08 08:30:47 MarkDuplicates Tracking 426629 as yet unmatched pairs. 10917 records in RAM.
INFO 2026-06-08 08:30:49 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 2s. Last read position: chr7:100,818,519
INFO 2026-06-08 08:30:49 MarkDuplicates Tracking 425867 as yet unmatched pairs. 10143 records in RAM.
INFO 2026-06-08 08:30:51 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 1s. Last read position: chr7:100,995,722
INFO 2026-06-08 08:30:51 MarkDuplicates Tracking 425221 as yet unmatched pairs. 9492 records in RAM.
INFO 2026-06-08 08:30:53 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,747
INFO 2026-06-08 08:30:53 MarkDuplicates Tracking 425460 as yet unmatched pairs. 9726 records in RAM.
INFO 2026-06-08 08:30:54 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr7:101,210,372
INFO 2026-06-08 08:30:54 MarkDuplicates Tracking 424476 as yet unmatched pairs. 8740 records in RAM.
INFO 2026-06-08 08:30:56 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 1s. Last read position: chr7:105,107,471
INFO 2026-06-08 08:30:56 MarkDuplicates Tracking 423572 as yet unmatched pairs. 7831 records in RAM.
INFO 2026-06-08 08:30:58 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr7:117,664,748
INFO 2026-06-08 08:30:58 MarkDuplicates Tracking 422929 as yet unmatched pairs. 7175 records in RAM.
INFO 2026-06-08 08:30:59 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 1s. Last read position: chr7:128,074,638
INFO 2026-06-08 08:30:59 MarkDuplicates Tracking 423057 as yet unmatched pairs. 7294 records in RAM.
INFO 2026-06-08 08:31:01 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 1s. Last read position: chr7:132,785,619
INFO 2026-06-08 08:31:01 MarkDuplicates Tracking 421320 as yet unmatched pairs. 5524 records in RAM.
INFO 2026-06-08 08:31:03 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 1s. Last read position: chr7:139,269,432
INFO 2026-06-08 08:31:03 MarkDuplicates Tracking 420466 as yet unmatched pairs. 4664 records in RAM.
INFO 2026-06-08 08:31:05 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 1s. Last read position: chr7:143,388,835
INFO 2026-06-08 08:31:05 MarkDuplicates Tracking 419949 as yet unmatched pairs. 4135 records in RAM.
INFO 2026-06-08 08:31:06 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 1s. Last read position: chr7:149,454,227
INFO 2026-06-08 08:31:06 MarkDuplicates Tracking 418868 as yet unmatched pairs. 3045 records in RAM.
INFO 2026-06-08 08:31:08 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 1s. Last read position: chr7:151,066,550
INFO 2026-06-08 08:31:08 MarkDuplicates Tracking 418043 as yet unmatched pairs. 2214 records in RAM.
INFO 2026-06-08 08:31:10 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 1s. Last read position: chr7:154,993,748
INFO 2026-06-08 08:31:10 MarkDuplicates Tracking 416576 as yet unmatched pairs. 742 records in RAM.
INFO 2026-06-08 08:31:11 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 1s. Last read position: chr8:9,299,792
INFO 2026-06-08 08:31:11 MarkDuplicates Tracking 415430 as yet unmatched pairs. 26204 records in RAM.
INFO 2026-06-08 08:31:13 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 1s. Last read position: chr8:22,072,386
INFO 2026-06-08 08:31:13 MarkDuplicates Tracking 414818 as yet unmatched pairs. 25578 records in RAM.
INFO 2026-06-08 08:31:15 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:07:31s. Time for last 1,000,000: 1s. Last read position: chr8:22,619,246
INFO 2026-06-08 08:31:15 MarkDuplicates Tracking 414924 as yet unmatched pairs. 25674 records in RAM.
INFO 2026-06-08 08:31:17 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 1s. Last read position: chr8:30,066,012
INFO 2026-06-08 08:31:17 MarkDuplicates Tracking 413043 as yet unmatched pairs. 23758 records in RAM.
INFO 2026-06-08 08:31:19 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 1s. Last read position: chr8:37,697,789
INFO 2026-06-08 08:31:19 MarkDuplicates Tracking 418019 as yet unmatched pairs. 28722 records in RAM.
INFO 2026-06-08 08:31:21 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:07:37s. Time for last 1,000,000: 1s. Last read position: chr8:38,105,634
INFO 2026-06-08 08:31:21 MarkDuplicates Tracking 410491 as yet unmatched pairs. 21179 records in RAM.
INFO 2026-06-08 08:31:23 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:07:39s. Time for last 1,000,000: 1s. Last read position: chr8:47,673,864
INFO 2026-06-08 08:31:23 MarkDuplicates Tracking 409817 as yet unmatched pairs. 20494 records in RAM.
INFO 2026-06-08 08:31:25 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:07:41s. Time for last 1,000,000: 1s. Last read position: chr8:61,579,189
INFO 2026-06-08 08:31:25 MarkDuplicates Tracking 408923 as yet unmatched pairs. 19594 records in RAM.
INFO 2026-06-08 08:31:27 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:43s. Time for last 1,000,000: 2s. Last read position: chr8:81,703,005
INFO 2026-06-08 08:31:27 MarkDuplicates Tracking 408212 as yet unmatched pairs. 18869 records in RAM.
INFO 2026-06-08 08:31:29 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:45s. Time for last 1,000,000: 1s. Last read position: chr8:100,706,950
INFO 2026-06-08 08:31:29 MarkDuplicates Tracking 408120 as yet unmatched pairs. 18764 records in RAM.
INFO 2026-06-08 08:31:30 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:47s. Time for last 1,000,000: 1s. Last read position: chr8:116,858,420
INFO 2026-06-08 08:31:30 MarkDuplicates Tracking 406717 as yet unmatched pairs. 17335 records in RAM.
INFO 2026-06-08 08:31:32 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 1s. Last read position: chr8:127,738,268
INFO 2026-06-08 08:31:32 MarkDuplicates Tracking 409328 as yet unmatched pairs. 19933 records in RAM.
INFO 2026-06-08 08:31:34 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:50s. Time for last 1,000,000: 1s. Last read position: chr8:133,250,462
INFO 2026-06-08 08:31:34 MarkDuplicates Tracking 405114 as yet unmatched pairs. 15709 records in RAM.
INFO 2026-06-08 08:31:36 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 1s. Last read position: chr8:143,569,827
INFO 2026-06-08 08:31:36 MarkDuplicates Tracking 404077 as yet unmatched pairs. 14647 records in RAM.
INFO 2026-06-08 08:31:38 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 1s. Last read position: chr8:143,727,662
INFO 2026-06-08 08:31:38 MarkDuplicates Tracking 403223 as yet unmatched pairs. 13780 records in RAM.
INFO 2026-06-08 08:31:39 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:56s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,245
INFO 2026-06-08 08:31:39 MarkDuplicates Tracking 401675 as yet unmatched pairs. 12221 records in RAM.
INFO 2026-06-08 08:31:40 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,810
INFO 2026-06-08 08:31:40 MarkDuplicates Tracking 401592 as yet unmatched pairs. 12138 records in RAM.
INFO 2026-06-08 08:31:42 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,422
INFO 2026-06-08 08:31:42 MarkDuplicates Tracking 402941 as yet unmatched pairs. 13484 records in RAM.
INFO 2026-06-08 08:31:43 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:59s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,336
INFO 2026-06-08 08:31:43 MarkDuplicates Tracking 408945 as yet unmatched pairs. 19488 records in RAM.
INFO 2026-06-08 08:31:45 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,882
INFO 2026-06-08 08:31:45 MarkDuplicates Tracking 405196 as yet unmatched pairs. 15738 records in RAM.
INFO 2026-06-08 08:31:46 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,514
INFO 2026-06-08 08:31:46 MarkDuplicates Tracking 399626 as yet unmatched pairs. 10168 records in RAM.
INFO 2026-06-08 08:31:48 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,031
INFO 2026-06-08 08:31:48 MarkDuplicates Tracking 400055 as yet unmatched pairs. 10597 records in RAM.
INFO 2026-06-08 08:31:50 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,619
INFO 2026-06-08 08:31:50 MarkDuplicates Tracking 405487 as yet unmatched pairs. 16029 records in RAM.
INFO 2026-06-08 08:31:52 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,226
INFO 2026-06-08 08:31:52 MarkDuplicates Tracking 402536 as yet unmatched pairs. 13074 records in RAM.
INFO 2026-06-08 08:31:53 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,864
INFO 2026-06-08 08:31:53 MarkDuplicates Tracking 397289 as yet unmatched pairs. 7822 records in RAM.
INFO 2026-06-08 08:31:54 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,744
INFO 2026-06-08 08:31:54 MarkDuplicates Tracking 401164 as yet unmatched pairs. 11696 records in RAM.
INFO 2026-06-08 08:31:56 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:12s. Time for last 1,000,000: 1s. Last read position: chr8:143,865,411
INFO 2026-06-08 08:31:56 MarkDuplicates Tracking 396652 as yet unmatched pairs. 7184 records in RAM.
INFO 2026-06-08 08:31:57 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:13s. Time for last 1,000,000: 1s. Last read position: chr8:143,866,088
INFO 2026-06-08 08:31:57 MarkDuplicates Tracking 396554 as yet unmatched pairs. 7086 records in RAM.
INFO 2026-06-08 08:31:58 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 1s. Last read position: chr8:143,868,371
INFO 2026-06-08 08:31:58 MarkDuplicates Tracking 397480 as yet unmatched pairs. 8007 records in RAM.
INFO 2026-06-08 08:32:00 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 1s. Last read position: chr8:143,918,884
INFO 2026-06-08 08:32:00 MarkDuplicates Tracking 395440 as yet unmatched pairs. 5949 records in RAM.
INFO 2026-06-08 08:32:02 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 2s. Last read position: chr8:143,938,177
INFO 2026-06-08 08:32:02 MarkDuplicates Tracking 394290 as yet unmatched pairs. 4794 records in RAM.
INFO 2026-06-08 08:32:04 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 1s. Last read position: chr8:144,179,493
INFO 2026-06-08 08:32:04 MarkDuplicates Tracking 392941 as yet unmatched pairs. 3437 records in RAM.
INFO 2026-06-08 08:32:05 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 1s. Last read position: chr8:144,360,041
INFO 2026-06-08 08:32:05 MarkDuplicates Tracking 393089 as yet unmatched pairs. 3572 records in RAM.
INFO 2026-06-08 08:32:07 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr8:144,500,571
INFO 2026-06-08 08:32:07 MarkDuplicates Tracking 390758 as yet unmatched pairs. 1234 records in RAM.
INFO 2026-06-08 08:32:09 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 2s. Last read position: chr9:713,316
INFO 2026-06-08 08:32:09 MarkDuplicates Tracking 389497 as yet unmatched pairs. 23966 records in RAM.
INFO 2026-06-08 08:32:11 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 1s. Last read position: chr9:9,442,147
INFO 2026-06-08 08:32:11 MarkDuplicates Tracking 388424 as yet unmatched pairs. 22860 records in RAM.
INFO 2026-06-08 08:32:12 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr9:21,861,970
INFO 2026-06-08 08:32:12 MarkDuplicates Tracking 387765 as yet unmatched pairs. 22190 records in RAM.
INFO 2026-06-08 08:32:14 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 1s. Last read position: chr9:34,647,490
INFO 2026-06-08 08:32:14 MarkDuplicates Tracking 387059 as yet unmatched pairs. 21476 records in RAM.
INFO 2026-06-08 08:33:24 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 69s. Last read position: chr9:35,714,589
INFO 2026-06-08 08:33:24 MarkDuplicates Tracking 386211 as yet unmatched pairs. 20617 records in RAM.
INFO 2026-06-08 08:33:25 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr9:64,730,502
INFO 2026-06-08 08:33:25 MarkDuplicates Tracking 385187 as yet unmatched pairs. 19501 records in RAM.
INFO 2026-06-08 08:33:27 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr9:79,725,072
INFO 2026-06-08 08:33:27 MarkDuplicates Tracking 384538 as yet unmatched pairs. 18844 records in RAM.
INFO 2026-06-08 08:33:29 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr9:93,124,996
INFO 2026-06-08 08:33:29 MarkDuplicates Tracking 383766 as yet unmatched pairs. 18069 records in RAM.
INFO 2026-06-08 08:33:30 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr9:93,529,549
INFO 2026-06-08 08:33:30 MarkDuplicates Tracking 383154 as yet unmatched pairs. 17456 records in RAM.
INFO 2026-06-08 08:33:32 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr9:98,996,949
INFO 2026-06-08 08:33:32 MarkDuplicates Tracking 382032 as yet unmatched pairs. 16322 records in RAM.
INFO 2026-06-08 08:33:34 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr9:109,119,431
INFO 2026-06-08 08:33:34 MarkDuplicates Tracking 381088 as yet unmatched pairs. 15371 records in RAM.
INFO 2026-06-08 08:33:35 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr9:114,368,438
INFO 2026-06-08 08:33:35 MarkDuplicates Tracking 380263 as yet unmatched pairs. 14532 records in RAM.
INFO 2026-06-08 08:33:37 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr9:122,144,267
INFO 2026-06-08 08:33:37 MarkDuplicates Tracking 379221 as yet unmatched pairs. 13487 records in RAM.
INFO 2026-06-08 08:33:39 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr9:127,507,148
INFO 2026-06-08 08:33:39 MarkDuplicates Tracking 378552 as yet unmatched pairs. 12812 records in RAM.
INFO 2026-06-08 08:33:40 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr9:128,153,351
INFO 2026-06-08 08:33:40 MarkDuplicates Tracking 377254 as yet unmatched pairs. 11505 records in RAM.
INFO 2026-06-08 08:33:42 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr9:128,693,942
INFO 2026-06-08 08:33:42 MarkDuplicates Tracking 376542 as yet unmatched pairs. 10787 records in RAM.
INFO 2026-06-08 08:33:44 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr9:130,296,764
INFO 2026-06-08 08:33:44 MarkDuplicates Tracking 375395 as yet unmatched pairs. 9629 records in RAM.
INFO 2026-06-08 08:33:46 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 2s. Last read position: chr9:131,444,318
INFO 2026-06-08 08:33:46 MarkDuplicates Tracking 374999 as yet unmatched pairs. 9222 records in RAM.
INFO 2026-06-08 08:33:48 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 2s. Last read position: chr9:133,255,851
INFO 2026-06-08 08:33:48 MarkDuplicates Tracking 373835 as yet unmatched pairs. 8046 records in RAM.
INFO 2026-06-08 08:33:50 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr9:134,753,869
INFO 2026-06-08 08:33:50 MarkDuplicates Tracking 374655 as yet unmatched pairs. 8861 records in RAM.
INFO 2026-06-08 08:33:52 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr9:136,380,753
INFO 2026-06-08 08:33:52 MarkDuplicates Tracking 371940 as yet unmatched pairs. 6128 records in RAM.
INFO 2026-06-08 08:33:54 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr9:136,505,532
INFO 2026-06-08 08:33:54 MarkDuplicates Tracking 371324 as yet unmatched pairs. 5507 records in RAM.
INFO 2026-06-08 08:33:55 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr9:136,837,983
INFO 2026-06-08 08:33:55 MarkDuplicates Tracking 370130 as yet unmatched pairs. 4305 records in RAM.
INFO 2026-06-08 08:33:57 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr9:137,040,702
INFO 2026-06-08 08:33:57 MarkDuplicates Tracking 369750 as yet unmatched pairs. 3921 records in RAM.
INFO 2026-06-08 08:33:59 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr9:137,242,884
INFO 2026-06-08 08:33:59 MarkDuplicates Tracking 369013 as yet unmatched pairs. 3180 records in RAM.
INFO 2026-06-08 08:34:00 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr9:137,716,814
INFO 2026-06-08 08:34:00 MarkDuplicates Tracking 366115 as yet unmatched pairs. 264 records in RAM.
INFO 2026-06-08 08:34:02 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr10:5,749,186
INFO 2026-06-08 08:34:02 MarkDuplicates Tracking 365218 as yet unmatched pairs. 13268 records in RAM.
INFO 2026-06-08 08:34:04 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr10:17,617,207
INFO 2026-06-08 08:34:04 MarkDuplicates Tracking 364315 as yet unmatched pairs. 12350 records in RAM.
INFO 2026-06-08 08:34:06 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr10:32,028,486
INFO 2026-06-08 08:34:06 MarkDuplicates Tracking 364018 as yet unmatched pairs. 12042 records in RAM.
INFO 2026-06-08 08:34:07 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr10:46,010,859
INFO 2026-06-08 08:34:07 MarkDuplicates Tracking 363429 as yet unmatched pairs. 11445 records in RAM.
INFO 2026-06-08 08:34:09 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr10:60,733,266
INFO 2026-06-08 08:34:09 MarkDuplicates Tracking 362469 as yet unmatched pairs. 10475 records in RAM.
INFO 2026-06-08 08:34:11 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr10:71,288,693
INFO 2026-06-08 08:34:11 MarkDuplicates Tracking 361493 as yet unmatched pairs. 9484 records in RAM.
INFO 2026-06-08 08:34:13 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr10:73,911,171
INFO 2026-06-08 08:34:13 MarkDuplicates Tracking 360680 as yet unmatched pairs. 8660 records in RAM.
INFO 2026-06-08 08:34:15 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 2s. Last read position: chr10:79,741,338
INFO 2026-06-08 08:34:15 MarkDuplicates Tracking 359748 as yet unmatched pairs. 7720 records in RAM.
INFO 2026-06-08 08:34:17 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr10:87,756,851
INFO 2026-06-08 08:34:17 MarkDuplicates Tracking 359219 as yet unmatched pairs. 7188 records in RAM.
INFO 2026-06-08 08:34:19 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr10:96,620,545
INFO 2026-06-08 08:34:19 MarkDuplicates Tracking 358235 as yet unmatched pairs. 6189 records in RAM.
INFO 2026-06-08 08:34:20 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr10:99,956,989
INFO 2026-06-08 08:34:20 MarkDuplicates Tracking 357407 as yet unmatched pairs. 5346 records in RAM.
INFO 2026-06-08 08:34:22 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr10:102,358,141
INFO 2026-06-08 08:34:22 MarkDuplicates Tracking 356521 as yet unmatched pairs. 4459 records in RAM.
INFO 2026-06-08 08:34:24 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr10:110,116,910
INFO 2026-06-08 08:34:24 MarkDuplicates Tracking 355598 as yet unmatched pairs. 3525 records in RAM.
INFO 2026-06-08 08:34:25 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr10:117,374,774
INFO 2026-06-08 08:34:25 MarkDuplicates Tracking 355998 as yet unmatched pairs. 3924 records in RAM.
INFO 2026-06-08 08:34:27 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr10:122,429,843
INFO 2026-06-08 08:34:27 MarkDuplicates Tracking 353919 as yet unmatched pairs. 1831 records in RAM.
INFO 2026-06-08 08:34:29 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr10:128,103,103
INFO 2026-06-08 08:34:29 MarkDuplicates Tracking 353199 as yet unmatched pairs. 1102 records in RAM.
INFO 2026-06-08 08:34:30 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr10:133,459,931
INFO 2026-06-08 08:34:30 MarkDuplicates Tracking 352250 as yet unmatched pairs. 143 records in RAM.
INFO 2026-06-08 08:34:33 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 2s. Last read position: chr11:396,821
INFO 2026-06-08 08:34:33 MarkDuplicates Tracking 352594 as yet unmatched pairs. 43580 records in RAM.
INFO 2026-06-08 08:34:34 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr11:609,600
INFO 2026-06-08 08:34:34 MarkDuplicates Tracking 350306 as yet unmatched pairs. 41284 records in RAM.
INFO 2026-06-08 08:34:37 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 2s. Last read position: chr11:824,709
INFO 2026-06-08 08:34:37 MarkDuplicates Tracking 351600 as yet unmatched pairs. 42572 records in RAM.
INFO 2026-06-08 08:34:39 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr11:1,084,677
INFO 2026-06-08 08:34:39 MarkDuplicates Tracking 348706 as yet unmatched pairs. 39665 records in RAM.
INFO 2026-06-08 08:34:40 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr11:1,226,226
INFO 2026-06-08 08:34:40 MarkDuplicates Tracking 349158 as yet unmatched pairs. 40115 records in RAM.
INFO 2026-06-08 08:34:42 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr11:1,234,257
INFO 2026-06-08 08:34:42 MarkDuplicates Tracking 351390 as yet unmatched pairs. 42333 records in RAM.
INFO 2026-06-08 08:34:44 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr11:1,242,063
INFO 2026-06-08 08:34:44 MarkDuplicates Tracking 346364 as yet unmatched pairs. 37296 records in RAM.
INFO 2026-06-08 08:34:45 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr11:1,243,295
INFO 2026-06-08 08:34:45 MarkDuplicates Tracking 347480 as yet unmatched pairs. 38411 records in RAM.
INFO 2026-06-08 08:34:47 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr11:1,243,935
INFO 2026-06-08 08:34:47 MarkDuplicates Tracking 355846 as yet unmatched pairs. 46775 records in RAM.
INFO 2026-06-08 08:34:48 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr11:1,244,541
INFO 2026-06-08 08:34:48 MarkDuplicates Tracking 347087 as yet unmatched pairs. 38015 records in RAM.
INFO 2026-06-08 08:34:49 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr11:1,245,246
INFO 2026-06-08 08:34:49 MarkDuplicates Tracking 345810 as yet unmatched pairs. 36738 records in RAM.
INFO 2026-06-08 08:34:51 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr11:1,246,357
INFO 2026-06-08 08:34:51 MarkDuplicates Tracking 346711 as yet unmatched pairs. 37639 records in RAM.
INFO 2026-06-08 08:34:53 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr11:1,247,275
INFO 2026-06-08 08:34:53 MarkDuplicates Tracking 346922 as yet unmatched pairs. 37849 records in RAM.
INFO 2026-06-08 08:34:54 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr11:1,248,084
INFO 2026-06-08 08:34:54 MarkDuplicates Tracking 344745 as yet unmatched pairs. 35672 records in RAM.
INFO 2026-06-08 08:34:56 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr11:1,248,893
INFO 2026-06-08 08:34:56 MarkDuplicates Tracking 347415 as yet unmatched pairs. 38341 records in RAM.
INFO 2026-06-08 08:34:57 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr11:1,249,668
INFO 2026-06-08 08:34:57 MarkDuplicates Tracking 343628 as yet unmatched pairs. 34550 records in RAM.
INFO 2026-06-08 08:34:58 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr11:1,250,753
INFO 2026-06-08 08:34:58 MarkDuplicates Tracking 342248 as yet unmatched pairs. 33162 records in RAM.
INFO 2026-06-08 08:35:00 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr11:1,255,426
INFO 2026-06-08 08:35:00 MarkDuplicates Tracking 343482 as yet unmatched pairs. 34384 records in RAM.
INFO 2026-06-08 08:35:02 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 2s. Last read position: chr11:1,754,025
INFO 2026-06-08 08:35:02 MarkDuplicates Tracking 340694 as yet unmatched pairs. 31596 records in RAM.
INFO 2026-06-08 08:35:04 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr11:2,928,937
INFO 2026-06-08 08:35:04 MarkDuplicates Tracking 340344 as yet unmatched pairs. 31228 records in RAM.
INFO 2026-06-08 08:35:06 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 2s. Last read position: chr11:6,611,394
INFO 2026-06-08 08:35:06 MarkDuplicates Tracking 338108 as yet unmatched pairs. 28981 records in RAM.
INFO 2026-06-08 08:35:08 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr11:10,773,146
INFO 2026-06-08 08:35:08 MarkDuplicates Tracking 336769 as yet unmatched pairs. 27636 records in RAM.
INFO 2026-06-08 08:35:10 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr11:18,266,259
INFO 2026-06-08 08:35:10 MarkDuplicates Tracking 336079 as yet unmatched pairs. 26941 records in RAM.
INFO 2026-06-08 08:35:11 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr11:34,164,776
INFO 2026-06-08 08:35:11 MarkDuplicates Tracking 335335 as yet unmatched pairs. 26193 records in RAM.
INFO 2026-06-08 08:35:13 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr11:46,278,105
INFO 2026-06-08 08:35:13 MarkDuplicates Tracking 336069 as yet unmatched pairs. 26922 records in RAM.
INFO 2026-06-08 08:35:15 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr11:46,873,484
INFO 2026-06-08 08:35:15 MarkDuplicates Tracking 334031 as yet unmatched pairs. 24884 records in RAM.
INFO 2026-06-08 08:35:17 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr11:47,425,894
INFO 2026-06-08 08:35:17 MarkDuplicates Tracking 332719 as yet unmatched pairs. 23568 records in RAM.
INFO 2026-06-08 08:35:18 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr11:57,739,233
INFO 2026-06-08 08:35:18 MarkDuplicates Tracking 331942 as yet unmatched pairs. 22787 records in RAM.
INFO 2026-06-08 08:35:20 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr11:60,951,089
INFO 2026-06-08 08:35:20 MarkDuplicates Tracking 331275 as yet unmatched pairs. 22109 records in RAM.
INFO 2026-06-08 08:35:22 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr11:62,517,272
INFO 2026-06-08 08:35:22 MarkDuplicates Tracking 330344 as yet unmatched pairs. 21139 records in RAM.
INFO 2026-06-08 08:35:23 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr11:62,576,700
INFO 2026-06-08 08:35:23 MarkDuplicates Tracking 329520 as yet unmatched pairs. 20311 records in RAM.
INFO 2026-06-08 08:35:25 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr11:62,824,486
INFO 2026-06-08 08:35:25 MarkDuplicates Tracking 328677 as yet unmatched pairs. 19465 records in RAM.
INFO 2026-06-08 08:35:26 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr11:64,230,803
INFO 2026-06-08 08:35:26 MarkDuplicates Tracking 327620 as yet unmatched pairs. 18402 records in RAM.
INFO 2026-06-08 08:35:28 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 2s. Last read position: chr11:64,349,627
INFO 2026-06-08 08:35:28 MarkDuplicates Tracking 326395 as yet unmatched pairs. 17169 records in RAM.
INFO 2026-06-08 08:35:30 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr11:64,911,146
INFO 2026-06-08 08:35:30 MarkDuplicates Tracking 325552 as yet unmatched pairs. 16323 records in RAM.
INFO 2026-06-08 08:35:32 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr11:65,275,923
INFO 2026-06-08 08:35:32 MarkDuplicates Tracking 324117 as yet unmatched pairs. 14887 records in RAM.
INFO 2026-06-08 08:35:34 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr11:65,598,460
INFO 2026-06-08 08:35:34 MarkDuplicates Tracking 323679 as yet unmatched pairs. 14440 records in RAM.
INFO 2026-06-08 08:35:36 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 2s. Last read position: chr11:65,777,383
INFO 2026-06-08 08:35:36 MarkDuplicates Tracking 321990 as yet unmatched pairs. 12751 records in RAM.
INFO 2026-06-08 08:35:38 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr11:66,315,484
INFO 2026-06-08 08:35:38 MarkDuplicates Tracking 321235 as yet unmatched pairs. 11983 records in RAM.
INFO 2026-06-08 08:35:40 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr11:67,140,237
INFO 2026-06-08 08:35:40 MarkDuplicates Tracking 319945 as yet unmatched pairs. 10685 records in RAM.
INFO 2026-06-08 08:35:41 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr11:67,497,288
INFO 2026-06-08 08:35:41 MarkDuplicates Tracking 319535 as yet unmatched pairs. 10274 records in RAM.
INFO 2026-06-08 08:35:43 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr11:68,438,613
INFO 2026-06-08 08:35:43 MarkDuplicates Tracking 317802 as yet unmatched pairs. 8533 records in RAM.
INFO 2026-06-08 08:35:45 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr11:70,206,210
INFO 2026-06-08 08:35:45 MarkDuplicates Tracking 316907 as yet unmatched pairs. 7633 records in RAM.
INFO 2026-06-08 08:35:46 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr11:72,238,050
INFO 2026-06-08 08:35:46 MarkDuplicates Tracking 316018 as yet unmatched pairs. 6743 records in RAM.
INFO 2026-06-08 08:35:48 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr11:75,404,018
INFO 2026-06-08 08:35:48 MarkDuplicates Tracking 316393 as yet unmatched pairs. 7106 records in RAM.
INFO 2026-06-08 08:35:50 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr11:86,256,387
INFO 2026-06-08 08:35:50 MarkDuplicates Tracking 314192 as yet unmatched pairs. 4873 records in RAM.
INFO 2026-06-08 08:35:51 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr11:106,077,784
INFO 2026-06-08 08:35:51 MarkDuplicates Tracking 313481 as yet unmatched pairs. 4153 records in RAM.
INFO 2026-06-08 08:35:53 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr11:117,336,376
INFO 2026-06-08 08:35:53 MarkDuplicates Tracking 312548 as yet unmatched pairs. 3206 records in RAM.
INFO 2026-06-08 08:35:55 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr11:119,048,856
INFO 2026-06-08 08:35:55 MarkDuplicates Tracking 311860 as yet unmatched pairs. 2508 records in RAM.
INFO 2026-06-08 08:35:57 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr11:123,060,707
INFO 2026-06-08 08:35:57 MarkDuplicates Tracking 313815 as yet unmatched pairs. 4458 records in RAM.
INFO 2026-06-08 08:35:59 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 2s. Last read position: chr11:130,126,705
INFO 2026-06-08 08:35:59 MarkDuplicates Tracking 310210 as yet unmatched pairs. 847 records in RAM.
INFO 2026-06-08 08:36:02 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 2s. Last read position: chr12:796,428
INFO 2026-06-08 08:36:02 MarkDuplicates Tracking 309208 as yet unmatched pairs. 28724 records in RAM.
INFO 2026-06-08 08:36:03 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr12:6,232,659
INFO 2026-06-08 08:36:03 MarkDuplicates Tracking 309123 as yet unmatched pairs. 28634 records in RAM.
INFO 2026-06-08 08:36:05 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr12:6,537,692
INFO 2026-06-08 08:36:05 MarkDuplicates Tracking 307667 as yet unmatched pairs. 27174 records in RAM.
INFO 2026-06-08 08:36:07 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr12:6,936,122
INFO 2026-06-08 08:36:07 MarkDuplicates Tracking 306642 as yet unmatched pairs. 26149 records in RAM.
INFO 2026-06-08 08:36:09 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr12:9,418,437
INFO 2026-06-08 08:36:09 MarkDuplicates Tracking 305927 as yet unmatched pairs. 25432 records in RAM.
INFO 2026-06-08 08:36:10 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr12:12,975,322
INFO 2026-06-08 08:36:10 MarkDuplicates Tracking 305004 as yet unmatched pairs. 24500 records in RAM.
INFO 2026-06-08 08:36:12 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr12:26,995,322
INFO 2026-06-08 08:36:12 MarkDuplicates Tracking 304194 as yet unmatched pairs. 23680 records in RAM.
INFO 2026-06-08 08:36:14 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr12:44,920,768
INFO 2026-06-08 08:36:14 MarkDuplicates Tracking 303345 as yet unmatched pairs. 22818 records in RAM.
INFO 2026-06-08 08:36:16 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr12:48,836,153
INFO 2026-06-08 08:36:16 MarkDuplicates Tracking 302704 as yet unmatched pairs. 22163 records in RAM.
INFO 2026-06-08 08:36:17 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr12:49,052,078
INFO 2026-06-08 08:36:17 MarkDuplicates Tracking 302206 as yet unmatched pairs. 21661 records in RAM.
INFO 2026-06-08 08:36:19 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr12:49,349,106
INFO 2026-06-08 08:36:19 MarkDuplicates Tracking 301089 as yet unmatched pairs. 20537 records in RAM.
INFO 2026-06-08 08:36:21 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr12:52,041,755
INFO 2026-06-08 08:36:21 MarkDuplicates Tracking 300372 as yet unmatched pairs. 19815 records in RAM.
INFO 2026-06-08 08:36:22 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr12:52,952,743
INFO 2026-06-08 08:36:22 MarkDuplicates Tracking 300097 as yet unmatched pairs. 19534 records in RAM.
INFO 2026-06-08 08:36:25 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 2s. Last read position: chr12:53,479,449
INFO 2026-06-08 08:36:25 MarkDuplicates Tracking 298855 as yet unmatched pairs. 18288 records in RAM.
INFO 2026-06-08 08:36:27 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr12:55,719,095
INFO 2026-06-08 08:36:27 MarkDuplicates Tracking 298720 as yet unmatched pairs. 18152 records in RAM.
INFO 2026-06-08 08:36:28 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr12:56,159,581
INFO 2026-06-08 08:36:28 MarkDuplicates Tracking 297841 as yet unmatched pairs. 17268 records in RAM.
INFO 2026-06-08 08:36:30 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr12:56,602,181
INFO 2026-06-08 08:36:30 MarkDuplicates Tracking 296474 as yet unmatched pairs. 15900 records in RAM.
INFO 2026-06-08 08:36:32 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr12:57,096,630
INFO 2026-06-08 08:36:32 MarkDuplicates Tracking 297522 as yet unmatched pairs. 16940 records in RAM.
INFO 2026-06-08 08:36:34 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr12:57,156,185
INFO 2026-06-08 08:36:34 MarkDuplicates Tracking 294923 as yet unmatched pairs. 14341 records in RAM.
INFO 2026-06-08 08:36:35 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr12:57,600,418
INFO 2026-06-08 08:36:35 MarkDuplicates Tracking 293942 as yet unmatched pairs. 13348 records in RAM.
INFO 2026-06-08 08:36:37 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr12:67,305,666
INFO 2026-06-08 08:36:37 MarkDuplicates Tracking 293163 as yet unmatched pairs. 12562 records in RAM.
INFO 2026-06-08 08:36:39 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr12:79,690,161
INFO 2026-06-08 08:36:39 MarkDuplicates Tracking 292809 as yet unmatched pairs. 12204 records in RAM.
INFO 2026-06-08 08:36:40 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr12:100,218,445
INFO 2026-06-08 08:36:40 MarkDuplicates Tracking 291555 as yet unmatched pairs. 10947 records in RAM.
INFO 2026-06-08 08:36:42 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr12:108,623,035
INFO 2026-06-08 08:36:42 MarkDuplicates Tracking 290872 as yet unmatched pairs. 10259 records in RAM.
INFO 2026-06-08 08:36:44 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr12:111,485,769
INFO 2026-06-08 08:36:44 MarkDuplicates Tracking 289954 as yet unmatched pairs. 9332 records in RAM.
INFO 2026-06-08 08:36:45 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr12:112,948,970
INFO 2026-06-08 08:36:45 MarkDuplicates Tracking 289215 as yet unmatched pairs. 8593 records in RAM.
INFO 2026-06-08 08:36:48 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 2s. Last read position: chr12:118,246,130
INFO 2026-06-08 08:36:48 MarkDuplicates Tracking 288165 as yet unmatched pairs. 7530 records in RAM.
INFO 2026-06-08 08:36:50 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr12:120,221,704
INFO 2026-06-08 08:36:50 MarkDuplicates Tracking 288131 as yet unmatched pairs. 7483 records in RAM.
INFO 2026-06-08 08:36:51 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr12:121,346,015
INFO 2026-06-08 08:36:51 MarkDuplicates Tracking 286478 as yet unmatched pairs. 5809 records in RAM.
INFO 2026-06-08 08:36:53 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr12:122,133,608
INFO 2026-06-08 08:36:53 MarkDuplicates Tracking 287207 as yet unmatched pairs. 6525 records in RAM.
INFO 2026-06-08 08:36:55 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr12:123,261,745
INFO 2026-06-08 08:36:55 MarkDuplicates Tracking 284730 as yet unmatched pairs. 4041 records in RAM.
INFO 2026-06-08 08:36:57 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr12:124,483,604
INFO 2026-06-08 08:36:57 MarkDuplicates Tracking 284450 as yet unmatched pairs. 3749 records in RAM.
INFO 2026-06-08 08:36:58 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr12:132,017,604
INFO 2026-06-08 08:36:58 MarkDuplicates Tracking 282903 as yet unmatched pairs. 2196 records in RAM.
INFO 2026-06-08 08:37:00 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr12:132,632,318
INFO 2026-06-08 08:37:00 MarkDuplicates Tracking 281634 as yet unmatched pairs. 919 records in RAM.
INFO 2026-06-08 08:37:02 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr13:20,061,101
INFO 2026-06-08 08:37:02 MarkDuplicates Tracking 280705 as yet unmatched pairs. 6832 records in RAM.
INFO 2026-06-08 08:37:04 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr13:27,964,968
INFO 2026-06-08 08:37:04 MarkDuplicates Tracking 280226 as yet unmatched pairs. 6343 records in RAM.
INFO 2026-06-08 08:37:05 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr13:40,799,294
INFO 2026-06-08 08:37:05 MarkDuplicates Tracking 278927 as yet unmatched pairs. 5035 records in RAM.
INFO 2026-06-08 08:37:07 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr13:51,452,432
INFO 2026-06-08 08:37:07 MarkDuplicates Tracking 278145 as yet unmatched pairs. 4239 records in RAM.
INFO 2026-06-08 08:37:09 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr13:81,690,129
INFO 2026-06-08 08:37:09 MarkDuplicates Tracking 277264 as yet unmatched pairs. 3345 records in RAM.
INFO 2026-06-08 08:37:11 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 2s. Last read position: chr13:109,782,984
INFO 2026-06-08 08:37:11 MarkDuplicates Tracking 277075 as yet unmatched pairs. 3146 records in RAM.
INFO 2026-06-08 08:37:12 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr13:110,465,453
INFO 2026-06-08 08:37:12 MarkDuplicates Tracking 275600 as yet unmatched pairs. 1667 records in RAM.
INFO 2026-06-08 08:37:14 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 2s. Last read position: chr13:113,832,720
INFO 2026-06-08 08:37:14 MarkDuplicates Tracking 274720 as yet unmatched pairs. 776 records in RAM.
INFO 2026-06-08 08:37:16 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr14:21,230,337
INFO 2026-06-08 08:37:16 MarkDuplicates Tracking 274953 as yet unmatched pairs. 18579 records in RAM.
INFO 2026-06-08 08:37:18 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 2s. Last read position: chr14:23,033,609
INFO 2026-06-08 08:37:18 MarkDuplicates Tracking 273180 as yet unmatched pairs. 16801 records in RAM.
INFO 2026-06-08 08:37:20 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr14:24,145,721
INFO 2026-06-08 08:37:20 MarkDuplicates Tracking 271826 as yet unmatched pairs. 15442 records in RAM.
INFO 2026-06-08 08:37:22 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr14:30,616,310
INFO 2026-06-08 08:37:22 MarkDuplicates Tracking 270619 as yet unmatched pairs. 14231 records in RAM.
INFO 2026-06-08 08:37:24 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr14:45,224,167
INFO 2026-06-08 08:37:24 MarkDuplicates Tracking 269853 as yet unmatched pairs. 13453 records in RAM.
INFO 2026-06-08 08:37:26 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr14:49,586,688
INFO 2026-06-08 08:37:26 MarkDuplicates Tracking 309257 as yet unmatched pairs. 52837 records in RAM.
INFO 2026-06-08 08:37:27 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr14:49,853,709
INFO 2026-06-08 08:37:27 MarkDuplicates Tracking 269108 as yet unmatched pairs. 12674 records in RAM.
INFO 2026-06-08 08:37:29 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr14:49,862,659
INFO 2026-06-08 08:37:29 MarkDuplicates Tracking 279179 as yet unmatched pairs. 22733 records in RAM.
INFO 2026-06-08 08:37:30 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr14:52,268,326
INFO 2026-06-08 08:37:30 MarkDuplicates Tracking 268677 as yet unmatched pairs. 12213 records in RAM.
INFO 2026-06-08 08:37:32 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr14:63,909,202
INFO 2026-06-08 08:37:32 MarkDuplicates Tracking 267153 as yet unmatched pairs. 10683 records in RAM.
INFO 2026-06-08 08:37:34 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 2s. Last read position: chr14:67,752,263
INFO 2026-06-08 08:37:34 MarkDuplicates Tracking 266372 as yet unmatched pairs. 9901 records in RAM.
INFO 2026-06-08 08:37:36 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr14:73,543,483
INFO 2026-06-08 08:37:36 MarkDuplicates Tracking 265539 as yet unmatched pairs. 9066 records in RAM.
INFO 2026-06-08 08:37:37 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr14:75,913,885
INFO 2026-06-08 08:37:37 MarkDuplicates Tracking 264600 as yet unmatched pairs. 8124 records in RAM.
INFO 2026-06-08 08:37:39 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr14:91,338,035
INFO 2026-06-08 08:37:39 MarkDuplicates Tracking 263859 as yet unmatched pairs. 7377 records in RAM.
INFO 2026-06-08 08:37:41 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr14:99,502,951
INFO 2026-06-08 08:37:41 MarkDuplicates Tracking 263093 as yet unmatched pairs. 6552 records in RAM.
INFO 2026-06-08 08:37:42 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr14:102,030,213
INFO 2026-06-08 08:37:42 MarkDuplicates Tracking 262364 as yet unmatched pairs. 5809 records in RAM.
INFO 2026-06-08 08:37:44 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr14:103,465,658
INFO 2026-06-08 08:37:44 MarkDuplicates Tracking 260966 as yet unmatched pairs. 4410 records in RAM.
INFO 2026-06-08 08:37:45 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr14:104,712,930
INFO 2026-06-08 08:37:45 MarkDuplicates Tracking 259934 as yet unmatched pairs. 3367 records in RAM.
INFO 2026-06-08 08:37:48 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 2s. Last read position: chr14:104,945,024
INFO 2026-06-08 08:37:48 MarkDuplicates Tracking 258489 as yet unmatched pairs. 1918 records in RAM.
INFO 2026-06-08 08:37:49 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr14:105,643,223
INFO 2026-06-08 08:37:49 MarkDuplicates Tracking 257694 as yet unmatched pairs. 1119 records in RAM.
INFO 2026-06-08 08:37:51 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,909
INFO 2026-06-08 08:37:51 MarkDuplicates Tracking 261869 as yet unmatched pairs. 5290 records in RAM.
INFO 2026-06-08 08:37:53 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 2s. Last read position: chr15:28,233,535
INFO 2026-06-08 08:37:53 MarkDuplicates Tracking 256180 as yet unmatched pairs. 13538 records in RAM.
INFO 2026-06-08 08:37:55 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 2s. Last read position: chr15:34,387,818
INFO 2026-06-08 08:37:55 MarkDuplicates Tracking 255492 as yet unmatched pairs. 12838 records in RAM.
INFO 2026-06-08 08:37:57 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 1s. Last read position: chr15:40,738,541
INFO 2026-06-08 08:37:57 MarkDuplicates Tracking 254676 as yet unmatched pairs. 12016 records in RAM.
INFO 2026-06-08 08:37:58 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr15:42,401,671
INFO 2026-06-08 08:37:58 MarkDuplicates Tracking 253633 as yet unmatched pairs. 10967 records in RAM.
INFO 2026-06-08 08:38:00 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr15:43,792,978
INFO 2026-06-08 08:38:00 MarkDuplicates Tracking 255118 as yet unmatched pairs. 12450 records in RAM.
INFO 2026-06-08 08:38:02 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr15:48,481,680
INFO 2026-06-08 08:38:02 MarkDuplicates Tracking 252276 as yet unmatched pairs. 9597 records in RAM.
INFO 2026-06-08 08:38:03 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr15:59,372,552
INFO 2026-06-08 08:38:03 MarkDuplicates Tracking 251852 as yet unmatched pairs. 9167 records in RAM.
INFO 2026-06-08 08:38:05 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr15:63,749,412
INFO 2026-06-08 08:38:05 MarkDuplicates Tracking 250542 as yet unmatched pairs. 7851 records in RAM.
INFO 2026-06-08 08:38:06 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr15:67,098,354
INFO 2026-06-08 08:38:06 MarkDuplicates Tracking 249832 as yet unmatched pairs. 7128 records in RAM.
INFO 2026-06-08 08:38:08 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 1s. Last read position: chr15:72,571,162
INFO 2026-06-08 08:38:08 MarkDuplicates Tracking 248859 as yet unmatched pairs. 6149 records in RAM.
INFO 2026-06-08 08:38:10 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr15:74,035,304
INFO 2026-06-08 08:38:10 MarkDuplicates Tracking 250612 as yet unmatched pairs. 7896 records in RAM.
INFO 2026-06-08 08:38:11 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr15:75,208,182
INFO 2026-06-08 08:38:11 MarkDuplicates Tracking 247331 as yet unmatched pairs. 4614 records in RAM.
INFO 2026-06-08 08:38:13 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr15:78,891,488
INFO 2026-06-08 08:38:13 MarkDuplicates Tracking 245928 as yet unmatched pairs. 3208 records in RAM.
INFO 2026-06-08 08:38:14 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 1s. Last read position: chr15:85,116,025
INFO 2026-06-08 08:38:14 MarkDuplicates Tracking 245134 as yet unmatched pairs. 2403 records in RAM.
INFO 2026-06-08 08:38:16 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr15:89,903,909
INFO 2026-06-08 08:38:16 MarkDuplicates Tracking 244716 as yet unmatched pairs. 1978 records in RAM.
INFO 2026-06-08 08:38:18 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 1s. Last read position: chr15:92,126,095
INFO 2026-06-08 08:38:18 MarkDuplicates Tracking 243488 as yet unmatched pairs. 743 records in RAM.
INFO 2026-06-08 08:38:20 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 1s. Last read position: chr16:229,334
INFO 2026-06-08 08:38:20 MarkDuplicates Tracking 242532 as yet unmatched pairs. 36788 records in RAM.
INFO 2026-06-08 08:38:21 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr16:626,714
INFO 2026-06-08 08:38:21 MarkDuplicates Tracking 241466 as yet unmatched pairs. 35716 records in RAM.
INFO 2026-06-08 08:38:23 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr16:721,639
INFO 2026-06-08 08:38:23 MarkDuplicates Tracking 240415 as yet unmatched pairs. 34663 records in RAM.
INFO 2026-06-08 08:38:25 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: chr16:1,656,893
INFO 2026-06-08 08:38:25 MarkDuplicates Tracking 239034 as yet unmatched pairs. 33282 records in RAM.
INFO 2026-06-08 08:38:27 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 1s. Last read position: chr16:1,980,957
INFO 2026-06-08 08:38:27 MarkDuplicates Tracking 237797 as yet unmatched pairs. 32038 records in RAM.
INFO 2026-06-08 08:38:28 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 1s. Last read position: chr16:2,108,488
INFO 2026-06-08 08:38:28 MarkDuplicates Tracking 237166 as yet unmatched pairs. 31399 records in RAM.
INFO 2026-06-08 08:38:30 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 1s. Last read position: chr16:2,501,321
INFO 2026-06-08 08:38:30 MarkDuplicates Tracking 235313 as yet unmatched pairs. 29535 records in RAM.
INFO 2026-06-08 08:38:32 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 1s. Last read position: chr16:2,770,652
INFO 2026-06-08 08:38:32 MarkDuplicates Tracking 235213 as yet unmatched pairs. 29433 records in RAM.
INFO 2026-06-08 08:38:33 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr16:3,120,053
INFO 2026-06-08 08:38:33 MarkDuplicates Tracking 233476 as yet unmatched pairs. 27696 records in RAM.
INFO 2026-06-08 08:38:35 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 1s. Last read position: chr16:4,512,791
INFO 2026-06-08 08:38:35 MarkDuplicates Tracking 232551 as yet unmatched pairs. 26764 records in RAM.
INFO 2026-06-08 08:38:36 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 1s. Last read position: chr16:10,902,064
INFO 2026-06-08 08:38:36 MarkDuplicates Tracking 232730 as yet unmatched pairs. 26935 records in RAM.
INFO 2026-06-08 08:38:38 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 1s. Last read position: chr16:14,868,593
INFO 2026-06-08 08:38:38 MarkDuplicates Tracking 230927 as yet unmatched pairs. 25130 records in RAM.
INFO 2026-06-08 08:38:39 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 1s. Last read position: chr16:15,137,122
INFO 2026-06-08 08:38:39 MarkDuplicates Tracking 230436 as yet unmatched pairs. 24635 records in RAM.
INFO 2026-06-08 08:38:41 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 1s. Last read position: chr16:16,325,225
INFO 2026-06-08 08:38:41 MarkDuplicates Tracking 230173 as yet unmatched pairs. 24370 records in RAM.
INFO 2026-06-08 08:38:42 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 1s. Last read position: chr16:18,348,685
INFO 2026-06-08 08:38:42 MarkDuplicates Tracking 230338 as yet unmatched pairs. 24535 records in RAM.
INFO 2026-06-08 08:38:43 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 1s. Last read position: chr16:18,784,746
INFO 2026-06-08 08:38:43 MarkDuplicates Tracking 229533 as yet unmatched pairs. 23729 records in RAM.
INFO 2026-06-08 08:38:45 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr16:21,421,006
INFO 2026-06-08 08:38:45 MarkDuplicates Tracking 228715 as yet unmatched pairs. 22908 records in RAM.
INFO 2026-06-08 08:38:46 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 1s. Last read position: chr16:22,502,714
INFO 2026-06-08 08:38:46 MarkDuplicates Tracking 228226 as yet unmatched pairs. 22419 records in RAM.
INFO 2026-06-08 08:38:48 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr16:24,789,779
INFO 2026-06-08 08:38:48 MarkDuplicates Tracking 227695 as yet unmatched pairs. 21887 records in RAM.
INFO 2026-06-08 08:38:49 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 1s. Last read position: chr16:28,495,517
INFO 2026-06-08 08:38:49 MarkDuplicates Tracking 226959 as yet unmatched pairs. 21147 records in RAM.
INFO 2026-06-08 08:38:51 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 1s. Last read position: chr16:28,844,495
INFO 2026-06-08 08:38:51 MarkDuplicates Tracking 226927 as yet unmatched pairs. 21113 records in RAM.
INFO 2026-06-08 08:38:53 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 1s. Last read position: chr16:29,483,844
INFO 2026-06-08 08:38:53 MarkDuplicates Tracking 226777 as yet unmatched pairs. 20960 records in RAM.
INFO 2026-06-08 08:38:55 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:15:11s. Time for last 1,000,000: 2s. Last read position: chr16:29,844,620
INFO 2026-06-08 08:38:55 MarkDuplicates Tracking 225046 as yet unmatched pairs. 19226 records in RAM.
INFO 2026-06-08 08:38:56 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 1s. Last read position: chr16:30,083,753
INFO 2026-06-08 08:38:56 MarkDuplicates Tracking 223794 as yet unmatched pairs. 17971 records in RAM.
INFO 2026-06-08 08:38:58 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 1s. Last read position: chr16:30,429,057
INFO 2026-06-08 08:38:58 MarkDuplicates Tracking 223503 as yet unmatched pairs. 17679 records in RAM.
INFO 2026-06-08 08:39:00 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:15:16s. Time for last 1,000,000: 1s. Last read position: chr16:30,739,190
INFO 2026-06-08 08:39:00 MarkDuplicates Tracking 222338 as yet unmatched pairs. 16510 records in RAM.
INFO 2026-06-08 08:39:01 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:15:18s. Time for last 1,000,000: 1s. Last read position: chr16:31,182,626
INFO 2026-06-08 08:39:01 MarkDuplicates Tracking 222244 as yet unmatched pairs. 16409 records in RAM.
INFO 2026-06-08 08:39:03 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 1s. Last read position: chr16:47,610,861
INFO 2026-06-08 08:39:03 MarkDuplicates Tracking 220304 as yet unmatched pairs. 14469 records in RAM.
INFO 2026-06-08 08:39:05 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:15:21s. Time for last 1,000,000: 1s. Last read position: chr16:56,829,028
INFO 2026-06-08 08:39:05 MarkDuplicates Tracking 219461 as yet unmatched pairs. 13613 records in RAM.
INFO 2026-06-08 08:39:06 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:15:23s. Time for last 1,000,000: 1s. Last read position: chr16:57,282,246
INFO 2026-06-08 08:39:06 MarkDuplicates Tracking 218675 as yet unmatched pairs. 12816 records in RAM.
INFO 2026-06-08 08:39:08 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 1s. Last read position: chr16:66,742,579
INFO 2026-06-08 08:39:08 MarkDuplicates Tracking 217715 as yet unmatched pairs. 11839 records in RAM.
INFO 2026-06-08 08:39:10 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:15:26s. Time for last 1,000,000: 1s. Last read position: chr16:67,612,085
INFO 2026-06-08 08:39:10 MarkDuplicates Tracking 216653 as yet unmatched pairs. 10774 records in RAM.
INFO 2026-06-08 08:39:12 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 1s. Last read position: chr16:68,822,018
INFO 2026-06-08 08:39:12 MarkDuplicates Tracking 215866 as yet unmatched pairs. 9979 records in RAM.
INFO 2026-06-08 08:39:13 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:15:29s. Time for last 1,000,000: 1s. Last read position: chr16:70,366,212
INFO 2026-06-08 08:39:13 MarkDuplicates Tracking 214882 as yet unmatched pairs. 8990 records in RAM.
INFO 2026-06-08 08:39:15 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:15:31s. Time for last 1,000,000: 1s. Last read position: chr16:74,558,911
INFO 2026-06-08 08:39:15 MarkDuplicates Tracking 214111 as yet unmatched pairs. 8215 records in RAM.
INFO 2026-06-08 08:39:17 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:15:33s. Time for last 1,000,000: 1s. Last read position: chr16:84,054,516
INFO 2026-06-08 08:39:17 MarkDuplicates Tracking 213205 as yet unmatched pairs. 7298 records in RAM.
INFO 2026-06-08 08:39:18 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:15:34s. Time for last 1,000,000: 1s. Last read position: chr16:85,804,952
INFO 2026-06-08 08:39:18 MarkDuplicates Tracking 212534 as yet unmatched pairs. 6602 records in RAM.
INFO 2026-06-08 08:39:20 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:15:37s. Time for last 1,000,000: 2s. Last read position: chr16:88,438,611
INFO 2026-06-08 08:39:20 MarkDuplicates Tracking 211052 as yet unmatched pairs. 5113 records in RAM.
INFO 2026-06-08 08:39:23 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:15:39s. Time for last 1,000,000: 2s. Last read position: chr16:88,716,046
INFO 2026-06-08 08:39:23 MarkDuplicates Tracking 211101 as yet unmatched pairs. 5161 records in RAM.
INFO 2026-06-08 08:39:25 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:15:41s. Time for last 1,000,000: 2s. Last read position: chr16:88,807,177
INFO 2026-06-08 08:39:25 MarkDuplicates Tracking 209102 as yet unmatched pairs. 3150 records in RAM.
INFO 2026-06-08 08:39:27 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:15:43s. Time for last 1,000,000: 1s. Last read position: chr16:89,561,666
INFO 2026-06-08 08:39:27 MarkDuplicates Tracking 209623 as yet unmatched pairs. 3650 records in RAM.
INFO 2026-06-08 08:39:28 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:15:45s. Time for last 1,000,000: 1s. Last read position: chr16:89,828,659
INFO 2026-06-08 08:39:28 MarkDuplicates Tracking 207458 as yet unmatched pairs. 1480 records in RAM.
INFO 2026-06-08 08:39:31 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:15:47s. Time for last 1,000,000: 2s. Last read position: chr17:1,091,837
INFO 2026-06-08 08:39:31 MarkDuplicates Tracking 206361 as yet unmatched pairs. 54715 records in RAM.
INFO 2026-06-08 08:39:32 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:15:48s. Time for last 1,000,000: 1s. Last read position: chr17:1,682,233
INFO 2026-06-08 08:39:32 MarkDuplicates Tracking 204818 as yet unmatched pairs. 53162 records in RAM.
INFO 2026-06-08 08:39:34 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:15:50s. Time for last 1,000,000: 1s. Last read position: chr17:2,704,411
INFO 2026-06-08 08:39:34 MarkDuplicates Tracking 204201 as yet unmatched pairs. 52528 records in RAM.
INFO 2026-06-08 08:39:36 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:15:52s. Time for last 1,000,000: 1s. Last read position: chr17:4,559,593
INFO 2026-06-08 08:39:36 MarkDuplicates Tracking 203336 as yet unmatched pairs. 51663 records in RAM.
INFO 2026-06-08 08:39:38 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:15:54s. Time for last 1,000,000: 1s. Last read position: chr17:4,980,391
INFO 2026-06-08 08:39:38 MarkDuplicates Tracking 202090 as yet unmatched pairs. 50416 records in RAM.
INFO 2026-06-08 08:39:39 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:15:56s. Time for last 1,000,000: 1s. Last read position: chr17:7,223,758
INFO 2026-06-08 08:39:39 MarkDuplicates Tracking 201301 as yet unmatched pairs. 49619 records in RAM.
INFO 2026-06-08 08:39:41 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:15:58s. Time for last 1,000,000: 1s. Last read position: chr17:7,387,140
INFO 2026-06-08 08:39:41 MarkDuplicates Tracking 199965 as yet unmatched pairs. 48282 records in RAM.
INFO 2026-06-08 08:39:43 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:15:59s. Time for last 1,000,000: 1s. Last read position: chr17:7,579,701
INFO 2026-06-08 08:39:43 MarkDuplicates Tracking 199579 as yet unmatched pairs. 47894 records in RAM.
INFO 2026-06-08 08:39:45 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:16:01s. Time for last 1,000,000: 1s. Last read position: chr17:7,947,624
INFO 2026-06-08 08:39:45 MarkDuplicates Tracking 198633 as yet unmatched pairs. 46944 records in RAM.
INFO 2026-06-08 08:39:47 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:16:03s. Time for last 1,000,000: 1s. Last read position: chr17:15,440,257
INFO 2026-06-08 08:39:47 MarkDuplicates Tracking 197391 as yet unmatched pairs. 45701 records in RAM.
INFO 2026-06-08 08:39:48 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:16:05s. Time for last 1,000,000: 1s. Last read position: chr17:17,793,564
INFO 2026-06-08 08:39:48 MarkDuplicates Tracking 196624 as yet unmatched pairs. 44927 records in RAM.
INFO 2026-06-08 08:39:51 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:16:07s. Time for last 1,000,000: 2s. Last read position: chr17:18,247,693
INFO 2026-06-08 08:39:51 MarkDuplicates Tracking 195711 as yet unmatched pairs. 44012 records in RAM.
INFO 2026-06-08 08:39:52 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:16:09s. Time for last 1,000,000: 1s. Last read position: chr17:21,284,943
INFO 2026-06-08 08:39:52 MarkDuplicates Tracking 195232 as yet unmatched pairs. 43530 records in RAM.
INFO 2026-06-08 08:39:54 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:16:10s. Time for last 1,000,000: 1s. Last read position: chr17:28,641,997
INFO 2026-06-08 08:39:54 MarkDuplicates Tracking 193951 as yet unmatched pairs. 42235 records in RAM.
INFO 2026-06-08 08:39:56 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:16:12s. Time for last 1,000,000: 1s. Last read position: chr17:29,905,686
INFO 2026-06-08 08:39:56 MarkDuplicates Tracking 192990 as yet unmatched pairs. 41265 records in RAM.
INFO 2026-06-08 08:39:57 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:16:14s. Time for last 1,000,000: 1s. Last read position: chr17:35,657,738
INFO 2026-06-08 08:39:57 MarkDuplicates Tracking 192942 as yet unmatched pairs. 41213 records in RAM.
INFO 2026-06-08 08:39:59 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:16:15s. Time for last 1,000,000: 1s. Last read position: chr17:37,731,729
INFO 2026-06-08 08:39:59 MarkDuplicates Tracking 191328 as yet unmatched pairs. 39593 records in RAM.
INFO 2026-06-08 08:40:01 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:16:17s. Time for last 1,000,000: 1s. Last read position: chr17:38,850,390
INFO 2026-06-08 08:40:01 MarkDuplicates Tracking 191206 as yet unmatched pairs. 39468 records in RAM.
INFO 2026-06-08 08:40:02 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:16:19s. Time for last 1,000,000: 1s. Last read position: chr17:39,709,322
INFO 2026-06-08 08:40:02 MarkDuplicates Tracking 190582 as yet unmatched pairs. 38839 records in RAM.
INFO 2026-06-08 08:40:04 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:16:20s. Time for last 1,000,000: 1s. Last read position: chr17:39,724,726
INFO 2026-06-08 08:40:04 MarkDuplicates Tracking 189995 as yet unmatched pairs. 38252 records in RAM.
INFO 2026-06-08 08:40:06 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:16:22s. Time for last 1,000,000: 1s. Last read position: chr17:40,095,910
INFO 2026-06-08 08:40:06 MarkDuplicates Tracking 187857 as yet unmatched pairs. 36114 records in RAM.
INFO 2026-06-08 08:40:08 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:16:24s. Time for last 1,000,000: 1s. Last read position: chr17:41,757,432
INFO 2026-06-08 08:40:08 MarkDuplicates Tracking 187117 as yet unmatched pairs. 35373 records in RAM.
INFO 2026-06-08 08:40:09 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:16:26s. Time for last 1,000,000: 1s. Last read position: chr17:42,536,351
INFO 2026-06-08 08:40:09 MarkDuplicates Tracking 185911 as yet unmatched pairs. 34167 records in RAM.
INFO 2026-06-08 08:40:11 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:16:27s. Time for last 1,000,000: 1s. Last read position: chr17:44,036,142
INFO 2026-06-08 08:40:11 MarkDuplicates Tracking 185020 as yet unmatched pairs. 33274 records in RAM.
INFO 2026-06-08 08:40:13 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:16:29s. Time for last 1,000,000: 1s. Last read position: chr17:44,936,150
INFO 2026-06-08 08:40:13 MarkDuplicates Tracking 184474 as yet unmatched pairs. 32725 records in RAM.
INFO 2026-06-08 08:40:15 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:16:31s. Time for last 1,000,000: 2s. Last read position: chr17:47,050,226
INFO 2026-06-08 08:40:15 MarkDuplicates Tracking 183415 as yet unmatched pairs. 31666 records in RAM.
INFO 2026-06-08 08:40:17 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:16:33s. Time for last 1,000,000: 1s. Last read position: chr17:49,244,778
INFO 2026-06-08 08:40:17 MarkDuplicates Tracking 182540 as yet unmatched pairs. 30789 records in RAM.
INFO 2026-06-08 08:40:19 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:16:35s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,848
INFO 2026-06-08 08:40:19 MarkDuplicates Tracking 189277 as yet unmatched pairs. 37524 records in RAM.
INFO 2026-06-08 08:40:21 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:16:37s. Time for last 1,000,000: 2s. Last read position: chr17:50,187,944
INFO 2026-06-08 08:40:21 MarkDuplicates Tracking 202216 as yet unmatched pairs. 50463 records in RAM.
INFO 2026-06-08 08:40:23 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:16:39s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,771
INFO 2026-06-08 08:40:23 MarkDuplicates Tracking 203383 as yet unmatched pairs. 51630 records in RAM.
INFO 2026-06-08 08:40:24 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:16:41s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,518
INFO 2026-06-08 08:40:24 MarkDuplicates Tracking 200964 as yet unmatched pairs. 49211 records in RAM.
INFO 2026-06-08 08:40:26 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:16:43s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,337
INFO 2026-06-08 08:40:26 MarkDuplicates Tracking 220236 as yet unmatched pairs. 68481 records in RAM.
INFO 2026-06-08 08:40:28 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:16:44s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,837
INFO 2026-06-08 08:40:28 MarkDuplicates Tracking 198427 as yet unmatched pairs. 46667 records in RAM.
INFO 2026-06-08 08:40:30 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:16:46s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,845
INFO 2026-06-08 08:40:30 MarkDuplicates Tracking 200447 as yet unmatched pairs. 48686 records in RAM.
INFO 2026-06-08 08:40:32 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:16:48s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,356
INFO 2026-06-08 08:40:32 MarkDuplicates Tracking 198263 as yet unmatched pairs. 46495 records in RAM.
INFO 2026-06-08 08:40:33 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:16:50s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,070
INFO 2026-06-08 08:40:33 MarkDuplicates Tracking 192898 as yet unmatched pairs. 41130 records in RAM.
INFO 2026-06-08 08:40:35 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:16:51s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,926
INFO 2026-06-08 08:40:35 MarkDuplicates Tracking 194349 as yet unmatched pairs. 42581 records in RAM.
INFO 2026-06-08 08:40:37 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:16:53s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,499
INFO 2026-06-08 08:40:37 MarkDuplicates Tracking 199849 as yet unmatched pairs. 48080 records in RAM.
INFO 2026-06-08 08:40:39 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:16:55s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,751
INFO 2026-06-08 08:40:39 MarkDuplicates Tracking 210788 as yet unmatched pairs. 59019 records in RAM.
INFO 2026-06-08 08:40:41 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:16:57s. Time for last 1,000,000: 2s. Last read position: chr17:50,199,291
INFO 2026-06-08 08:40:41 MarkDuplicates Tracking 189571 as yet unmatched pairs. 37801 records in RAM.
INFO 2026-06-08 08:40:43 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:16:59s. Time for last 1,000,000: 1s. Last read position: chr17:50,699,763
INFO 2026-06-08 08:40:43 MarkDuplicates Tracking 168993 as yet unmatched pairs. 17217 records in RAM.
INFO 2026-06-08 08:40:45 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:17:01s. Time for last 1,000,000: 2s. Last read position: chr17:58,309,197
INFO 2026-06-08 08:40:45 MarkDuplicates Tracking 168893 as yet unmatched pairs. 17113 records in RAM.
INFO 2026-06-08 08:40:47 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:17:03s. Time for last 1,000,000: 1s. Last read position: chr17:59,651,221
INFO 2026-06-08 08:40:47 MarkDuplicates Tracking 168738 as yet unmatched pairs. 16953 records in RAM.
INFO 2026-06-08 08:40:48 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:17:04s. Time for last 1,000,000: 1s. Last read position: chr17:62,664,713
INFO 2026-06-08 08:40:48 MarkDuplicates Tracking 166632 as yet unmatched pairs. 14847 records in RAM.
INFO 2026-06-08 08:40:50 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:17:06s. Time for last 1,000,000: 1s. Last read position: chr17:64,896,576
INFO 2026-06-08 08:40:50 MarkDuplicates Tracking 165594 as yet unmatched pairs. 13802 records in RAM.
INFO 2026-06-08 08:41:46 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 56s. Last read position: chr17:74,203,940
INFO 2026-06-08 08:41:46 MarkDuplicates Tracking 165293 as yet unmatched pairs. 13493 records in RAM.
INFO 2026-06-08 08:42:54 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 67s. Last read position: chr17:75,543,433
INFO 2026-06-08 08:42:54 MarkDuplicates Tracking 164809 as yet unmatched pairs. 13002 records in RAM.
INFO 2026-06-08 08:42:55 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr17:75,733,667
INFO 2026-06-08 08:42:55 MarkDuplicates Tracking 163654 as yet unmatched pairs. 11845 records in RAM.
INFO 2026-06-08 08:42:57 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 1s. Last read position: chr17:75,958,582
INFO 2026-06-08 08:42:57 MarkDuplicates Tracking 161775 as yet unmatched pairs. 9966 records in RAM.
INFO 2026-06-08 08:42:59 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr17:76,736,949
INFO 2026-06-08 08:42:59 MarkDuplicates Tracking 161404 as yet unmatched pairs. 9594 records in RAM.
INFO 2026-06-08 08:43:00 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chr17:78,971,654
INFO 2026-06-08 08:43:00 MarkDuplicates Tracking 160370 as yet unmatched pairs. 8553 records in RAM.
INFO 2026-06-08 08:43:02 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chr17:80,203,778
INFO 2026-06-08 08:43:02 MarkDuplicates Tracking 158692 as yet unmatched pairs. 6873 records in RAM.
INFO 2026-06-08 08:43:04 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr17:80,857,816
INFO 2026-06-08 08:43:04 MarkDuplicates Tracking 157979 as yet unmatched pairs. 6152 records in RAM.
INFO 2026-06-08 08:43:05 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chr17:81,512,086
INFO 2026-06-08 08:43:05 MarkDuplicates Tracking 159450 as yet unmatched pairs. 7611 records in RAM.
INFO 2026-06-08 08:43:07 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 1s. Last read position: chr17:81,845,671
INFO 2026-06-08 08:43:07 MarkDuplicates Tracking 158147 as yet unmatched pairs. 6305 records in RAM.
INFO 2026-06-08 08:43:09 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chr17:81,985,602
INFO 2026-06-08 08:43:09 MarkDuplicates Tracking 155233 as yet unmatched pairs. 3391 records in RAM.
INFO 2026-06-08 08:43:10 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: chr17:82,084,585
INFO 2026-06-08 08:43:10 MarkDuplicates Tracking 154529 as yet unmatched pairs. 2681 records in RAM.
INFO 2026-06-08 08:43:12 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 1s. Last read position: chr17:82,392,491
INFO 2026-06-08 08:43:12 MarkDuplicates Tracking 152638 as yet unmatched pairs. 787 records in RAM.
INFO 2026-06-08 08:43:14 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chr18:3,277,279
INFO 2026-06-08 08:43:14 MarkDuplicates Tracking 152086 as yet unmatched pairs. 5103 records in RAM.
INFO 2026-06-08 08:43:15 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chr18:21,741,652
INFO 2026-06-08 08:43:15 MarkDuplicates Tracking 150847 as yet unmatched pairs. 3858 records in RAM.
INFO 2026-06-08 08:43:17 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chr18:39,612,341
INFO 2026-06-08 08:43:17 MarkDuplicates Tracking 149923 as yet unmatched pairs. 2933 records in RAM.
INFO 2026-06-08 08:43:19 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 1s. Last read position: chr18:54,205,015
INFO 2026-06-08 08:43:19 MarkDuplicates Tracking 149190 as yet unmatched pairs. 2195 records in RAM.
INFO 2026-06-08 08:43:22 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 2s. Last read position: chr18:63,318,309
INFO 2026-06-08 08:43:22 MarkDuplicates Tracking 149099 as yet unmatched pairs. 2100 records in RAM.
INFO 2026-06-08 08:43:24 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 2s. Last read position: chr19:70,739
INFO 2026-06-08 08:43:24 MarkDuplicates Tracking 147001 as yet unmatched pairs. 58065 records in RAM.
INFO 2026-06-08 08:43:26 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 2s. Last read position: chr19:757,863
INFO 2026-06-08 08:43:26 MarkDuplicates Tracking 146377 as yet unmatched pairs. 57439 records in RAM.
INFO 2026-06-08 08:43:28 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 2s. Last read position: chr19:1,058,853
INFO 2026-06-08 08:43:28 MarkDuplicates Tracking 144900 as yet unmatched pairs. 55961 records in RAM.
INFO 2026-06-08 08:43:30 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 1s. Last read position: chr19:1,254,416
INFO 2026-06-08 08:43:30 MarkDuplicates Tracking 144980 as yet unmatched pairs. 56041 records in RAM.
INFO 2026-06-08 08:43:31 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chr19:1,507,557
INFO 2026-06-08 08:43:31 MarkDuplicates Tracking 142650 as yet unmatched pairs. 53711 records in RAM.
INFO 2026-06-08 08:43:33 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr19:1,912,383
INFO 2026-06-08 08:43:33 MarkDuplicates Tracking 141171 as yet unmatched pairs. 52227 records in RAM.
INFO 2026-06-08 08:43:34 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 1s. Last read position: chr19:2,235,761
INFO 2026-06-08 08:43:34 MarkDuplicates Tracking 141949 as yet unmatched pairs. 53005 records in RAM.
INFO 2026-06-08 08:43:36 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chr19:2,763,719
INFO 2026-06-08 08:43:36 MarkDuplicates Tracking 138676 as yet unmatched pairs. 49727 records in RAM.
INFO 2026-06-08 08:43:38 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 1s. Last read position: chr19:3,708,545
INFO 2026-06-08 08:43:38 MarkDuplicates Tracking 137436 as yet unmatched pairs. 48486 records in RAM.
INFO 2026-06-08 08:43:39 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 1s. Last read position: chr19:4,381,137
INFO 2026-06-08 08:43:39 MarkDuplicates Tracking 136170 as yet unmatched pairs. 47218 records in RAM.
INFO 2026-06-08 08:43:41 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 1s. Last read position: chr19:5,611,382
INFO 2026-06-08 08:43:41 MarkDuplicates Tracking 135218 as yet unmatched pairs. 46261 records in RAM.
INFO 2026-06-08 08:43:42 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 1s. Last read position: chr19:5,909,094
INFO 2026-06-08 08:43:42 MarkDuplicates Tracking 134285 as yet unmatched pairs. 45327 records in RAM.
INFO 2026-06-08 08:43:44 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 2s. Last read position: chr19:7,463,858
INFO 2026-06-08 08:43:44 MarkDuplicates Tracking 133250 as yet unmatched pairs. 44292 records in RAM.
INFO 2026-06-08 08:43:46 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 1s. Last read position: chr19:8,403,735
INFO 2026-06-08 08:43:46 MarkDuplicates Tracking 131967 as yet unmatched pairs. 43008 records in RAM.
INFO 2026-06-08 08:43:48 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 2s. Last read position: chr19:10,160,404
INFO 2026-06-08 08:43:48 MarkDuplicates Tracking 131022 as yet unmatched pairs. 42063 records in RAM.
INFO 2026-06-08 08:43:51 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 2s. Last read position: chr19:10,679,819
INFO 2026-06-08 08:43:51 MarkDuplicates Tracking 130664 as yet unmatched pairs. 41702 records in RAM.
INFO 2026-06-08 08:43:53 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 2s. Last read position: chr19:11,027,721
INFO 2026-06-08 08:43:53 MarkDuplicates Tracking 129048 as yet unmatched pairs. 40083 records in RAM.
INFO 2026-06-08 08:43:54 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 1s. Last read position: chr19:11,496,067
INFO 2026-06-08 08:43:54 MarkDuplicates Tracking 128124 as yet unmatched pairs. 39157 records in RAM.
INFO 2026-06-08 08:43:56 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chr19:12,838,616
INFO 2026-06-08 08:43:56 MarkDuplicates Tracking 127116 as yet unmatched pairs. 38148 records in RAM.
INFO 2026-06-08 08:43:58 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 1s. Last read position: chr19:13,153,615
INFO 2026-06-08 08:43:58 MarkDuplicates Tracking 126345 as yet unmatched pairs. 37376 records in RAM.
INFO 2026-06-08 08:43:59 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: chr19:14,433,465
INFO 2026-06-08 08:43:59 MarkDuplicates Tracking 125245 as yet unmatched pairs. 36276 records in RAM.
INFO 2026-06-08 08:44:01 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 1s. Last read position: chr19:15,181,067
INFO 2026-06-08 08:44:01 MarkDuplicates Tracking 124244 as yet unmatched pairs. 35273 records in RAM.
INFO 2026-06-08 08:44:02 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 1s. Last read position: chr19:15,272,955
INFO 2026-06-08 08:44:02 MarkDuplicates Tracking 124371 as yet unmatched pairs. 35398 records in RAM.
INFO 2026-06-08 08:44:04 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: chr19:17,059,628
INFO 2026-06-08 08:44:04 MarkDuplicates Tracking 122153 as yet unmatched pairs. 33172 records in RAM.
INFO 2026-06-08 08:44:06 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 1s. Last read position: chr19:17,726,818
INFO 2026-06-08 08:44:06 MarkDuplicates Tracking 121159 as yet unmatched pairs. 32177 records in RAM.
INFO 2026-06-08 08:44:07 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: chr19:18,281,110
INFO 2026-06-08 08:44:07 MarkDuplicates Tracking 121214 as yet unmatched pairs. 32232 records in RAM.
INFO 2026-06-08 08:44:09 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 1s. Last read position: chr19:18,765,479
INFO 2026-06-08 08:44:09 MarkDuplicates Tracking 118925 as yet unmatched pairs. 29931 records in RAM.
INFO 2026-06-08 08:44:10 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 1s. Last read position: chr19:19,526,202
INFO 2026-06-08 08:44:10 MarkDuplicates Tracking 118062 as yet unmatched pairs. 29068 records in RAM.
INFO 2026-06-08 08:44:12 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 1s. Last read position: chr19:33,391,402
INFO 2026-06-08 08:44:12 MarkDuplicates Tracking 116599 as yet unmatched pairs. 27595 records in RAM.
INFO 2026-06-08 08:44:14 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 2s. Last read position: chr19:35,267,176
INFO 2026-06-08 08:44:14 MarkDuplicates Tracking 119818 as yet unmatched pairs. 30814 records in RAM.
INFO 2026-06-08 08:44:17 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 2s. Last read position: chr19:35,777,683
INFO 2026-06-08 08:44:17 MarkDuplicates Tracking 113884 as yet unmatched pairs. 24880 records in RAM.
INFO 2026-06-08 08:44:19 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 1s. Last read position: chr19:38,565,073
INFO 2026-06-08 08:44:19 MarkDuplicates Tracking 112812 as yet unmatched pairs. 23806 records in RAM.
INFO 2026-06-08 08:44:20 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: chr19:38,836,578
INFO 2026-06-08 08:44:20 MarkDuplicates Tracking 112141 as yet unmatched pairs. 23135 records in RAM.
INFO 2026-06-08 08:44:22 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 1s. Last read position: chr19:39,433,288
INFO 2026-06-08 08:44:22 MarkDuplicates Tracking 112310 as yet unmatched pairs. 23304 records in RAM.
INFO 2026-06-08 08:44:23 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 1s. Last read position: chr19:39,886,210
INFO 2026-06-08 08:44:23 MarkDuplicates Tracking 111428 as yet unmatched pairs. 22421 records in RAM.
INFO 2026-06-08 08:44:25 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: chr19:39,918,072
INFO 2026-06-08 08:44:25 MarkDuplicates Tracking 110370 as yet unmatched pairs. 21363 records in RAM.
INFO 2026-06-08 08:44:26 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 1s. Last read position: chr19:40,605,752
INFO 2026-06-08 08:44:26 MarkDuplicates Tracking 108657 as yet unmatched pairs. 19650 records in RAM.
INFO 2026-06-08 08:44:28 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:20:44s. Time for last 1,000,000: 1s. Last read position: chr19:41,715,116
INFO 2026-06-08 08:44:28 MarkDuplicates Tracking 108006 as yet unmatched pairs. 18997 records in RAM.
INFO 2026-06-08 08:44:29 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 1s. Last read position: chr19:42,272,661
INFO 2026-06-08 08:44:29 MarkDuplicates Tracking 108100 as yet unmatched pairs. 19090 records in RAM.
INFO 2026-06-08 08:44:31 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 1s. Last read position: chr19:42,410,246
INFO 2026-06-08 08:44:31 MarkDuplicates Tracking 105724 as yet unmatched pairs. 16701 records in RAM.
INFO 2026-06-08 08:44:32 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 1s. Last read position: chr19:44,891,517
INFO 2026-06-08 08:44:32 MarkDuplicates Tracking 105558 as yet unmatched pairs. 16533 records in RAM.
INFO 2026-06-08 08:44:34 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:20:50s. Time for last 1,000,000: 1s. Last read position: chr19:45,517,961
INFO 2026-06-08 08:44:34 MarkDuplicates Tracking 103493 as yet unmatched pairs. 14464 records in RAM.
INFO 2026-06-08 08:44:35 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 1s. Last read position: chr19:46,609,168
INFO 2026-06-08 08:44:35 MarkDuplicates Tracking 102512 as yet unmatched pairs. 13477 records in RAM.
INFO 2026-06-08 08:44:37 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:20:53s. Time for last 1,000,000: 1s. Last read position: chr19:47,500,643
INFO 2026-06-08 08:44:37 MarkDuplicates Tracking 101335 as yet unmatched pairs. 12298 records in RAM.
INFO 2026-06-08 08:44:39 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:20:55s. Time for last 1,000,000: 1s. Last read position: chr19:48,615,374
INFO 2026-06-08 08:44:39 MarkDuplicates Tracking 102215 as yet unmatched pairs. 13177 records in RAM.
INFO 2026-06-08 08:44:40 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 1s. Last read position: chr19:49,015,137
INFO 2026-06-08 08:44:40 MarkDuplicates Tracking 99676 as yet unmatched pairs. 10638 records in RAM.
INFO 2026-06-08 08:44:43 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:20:59s. Time for last 1,000,000: 2s. Last read position: chr19:49,497,581
INFO 2026-06-08 08:44:43 MarkDuplicates Tracking 98732 as yet unmatched pairs. 9694 records in RAM.
INFO 2026-06-08 08:44:45 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 1s. Last read position: chr19:49,662,312
INFO 2026-06-08 08:44:45 MarkDuplicates Tracking 98356 as yet unmatched pairs. 9318 records in RAM.
INFO 2026-06-08 08:44:46 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:21:03s. Time for last 1,000,000: 1s. Last read position: chr19:50,031,068
INFO 2026-06-08 08:44:46 MarkDuplicates Tracking 96236 as yet unmatched pairs. 7198 records in RAM.
INFO 2026-06-08 08:44:48 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 1s. Last read position: chr19:50,301,722
INFO 2026-06-08 08:44:48 MarkDuplicates Tracking 95641 as yet unmatched pairs. 6602 records in RAM.
INFO 2026-06-08 08:44:49 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:21:06s. Time for last 1,000,000: 1s. Last read position: chr19:53,873,789
INFO 2026-06-08 08:44:49 MarkDuplicates Tracking 94165 as yet unmatched pairs. 5124 records in RAM.
INFO 2026-06-08 08:44:51 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:21:07s. Time for last 1,000,000: 1s. Last read position: chr19:54,458,703
INFO 2026-06-08 08:44:51 MarkDuplicates Tracking 93925 as yet unmatched pairs. 4880 records in RAM.
INFO 2026-06-08 08:44:53 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:21:09s. Time for last 1,000,000: 2s. Last read position: chr19:55,383,772
INFO 2026-06-08 08:44:53 MarkDuplicates Tracking 91810 as yet unmatched pairs. 2764 records in RAM.
INFO 2026-06-08 08:44:55 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:21:11s. Time for last 1,000,000: 1s. Last read position: chr19:55,694,790
INFO 2026-06-08 08:44:55 MarkDuplicates Tracking 91565 as yet unmatched pairs. 2513 records in RAM.
INFO 2026-06-08 08:44:56 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:21:12s. Time for last 1,000,000: 1s. Last read position: chr19:58,544,877
INFO 2026-06-08 08:44:56 MarkDuplicates Tracking 90789 as yet unmatched pairs. 1737 records in RAM.
INFO 2026-06-08 08:44:58 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:21:14s. Time for last 1,000,000: 1s. Last read position: chr20:1,375,530
INFO 2026-06-08 08:44:58 MarkDuplicates Tracking 89977 as yet unmatched pairs. 13810 records in RAM.
INFO 2026-06-08 08:45:00 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:21:16s. Time for last 1,000,000: 1s. Last read position: chr20:3,796,547
INFO 2026-06-08 08:45:00 MarkDuplicates Tracking 90261 as yet unmatched pairs. 14094 records in RAM.
INFO 2026-06-08 08:45:02 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:21:18s. Time for last 1,000,000: 1s. Last read position: chr20:17,620,772
INFO 2026-06-08 08:45:02 MarkDuplicates Tracking 87337 as yet unmatched pairs. 11168 records in RAM.
INFO 2026-06-08 08:45:03 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:21:20s. Time for last 1,000,000: 1s. Last read position: chr20:25,195,736
INFO 2026-06-08 08:45:03 MarkDuplicates Tracking 85917 as yet unmatched pairs. 9747 records in RAM.
INFO 2026-06-08 08:45:05 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:21:21s. Time for last 1,000,000: 1s. Last read position: chr20:33,508,875
INFO 2026-06-08 08:45:05 MarkDuplicates Tracking 84873 as yet unmatched pairs. 8700 records in RAM.
INFO 2026-06-08 08:45:07 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:21:23s. Time for last 1,000,000: 2s. Last read position: chr20:35,491,232
INFO 2026-06-08 08:45:07 MarkDuplicates Tracking 83847 as yet unmatched pairs. 7673 records in RAM.
INFO 2026-06-08 08:45:09 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:21:25s. Time for last 1,000,000: 1s. Last read position: chr20:38,033,973
INFO 2026-06-08 08:45:09 MarkDuplicates Tracking 82904 as yet unmatched pairs. 6730 records in RAM.
INFO 2026-06-08 08:45:11 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:21:27s. Time for last 1,000,000: 2s. Last read position: chr20:45,330,495
INFO 2026-06-08 08:45:11 MarkDuplicates Tracking 83106 as yet unmatched pairs. 6930 records in RAM.
INFO 2026-06-08 08:45:13 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:21:29s. Time for last 1,000,000: 1s. Last read position: chr20:49,223,428
INFO 2026-06-08 08:45:13 MarkDuplicates Tracking 81262 as yet unmatched pairs. 5084 records in RAM.
INFO 2026-06-08 08:45:14 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:21:30s. Time for last 1,000,000: 1s. Last read position: chr20:57,565,525
INFO 2026-06-08 08:45:14 MarkDuplicates Tracking 80588 as yet unmatched pairs. 4401 records in RAM.
INFO 2026-06-08 08:45:16 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:21:32s. Time for last 1,000,000: 1s. Last read position: chr20:62,322,305
INFO 2026-06-08 08:45:16 MarkDuplicates Tracking 79365 as yet unmatched pairs. 3176 records in RAM.
INFO 2026-06-08 08:45:17 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:21:33s. Time for last 1,000,000: 1s. Last read position: chr20:63,287,798
INFO 2026-06-08 08:45:17 MarkDuplicates Tracking 78574 as yet unmatched pairs. 2383 records in RAM.
INFO 2026-06-08 08:45:19 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:21:35s. Time for last 1,000,000: 1s. Last read position: chr20:63,698,380
INFO 2026-06-08 08:45:19 MarkDuplicates Tracking 78299 as yet unmatched pairs. 2108 records in RAM.
INFO 2026-06-08 08:45:20 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:21:37s. Time for last 1,000,000: 1s. Last read position: chr21:5,118,772
INFO 2026-06-08 08:45:20 MarkDuplicates Tracking 76360 as yet unmatched pairs. 24180 records in RAM.
INFO 2026-06-08 08:45:21 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:21:38s. Time for last 1,000,000: 1s. Last read position: chr21:8,211,682
INFO 2026-06-08 08:45:21 MarkDuplicates Tracking 75451 as yet unmatched pairs. 23271 records in RAM.
INFO 2026-06-08 08:45:23 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:21:39s. Time for last 1,000,000: 1s. Last read position: chr21:8,214,496
INFO 2026-06-08 08:45:23 MarkDuplicates Tracking 73941 as yet unmatched pairs. 21761 records in RAM.
INFO 2026-06-08 08:45:24 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:21:40s. Time for last 1,000,000: 1s. Last read position: chr21:8,216,085
INFO 2026-06-08 08:45:24 MarkDuplicates Tracking 72727 as yet unmatched pairs. 20532 records in RAM.
INFO 2026-06-08 08:45:25 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:21:41s. Time for last 1,000,000: 1s. Last read position: chr21:8,217,277
INFO 2026-06-08 08:45:25 MarkDuplicates Tracking 74074 as yet unmatched pairs. 21876 records in RAM.
INFO 2026-06-08 08:45:26 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:21:42s. Time for last 1,000,000: 1s. Last read position: chr21:8,253,194
INFO 2026-06-08 08:45:26 MarkDuplicates Tracking 70184 as yet unmatched pairs. 17986 records in RAM.
INFO 2026-06-08 08:45:27 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:21:44s. Time for last 1,000,000: 1s. Last read position: chr21:8,258,094
INFO 2026-06-08 08:45:27 MarkDuplicates Tracking 69575 as yet unmatched pairs. 17375 records in RAM.
INFO 2026-06-08 08:45:28 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:21:45s. Time for last 1,000,000: 0s. Last read position: chr21:8,260,263
INFO 2026-06-08 08:45:28 MarkDuplicates Tracking 69361 as yet unmatched pairs. 17161 records in RAM.
INFO 2026-06-08 08:45:29 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:21:45s. Time for last 1,000,000: 0s. Last read position: chr21:8,393,368
INFO 2026-06-08 08:45:29 MarkDuplicates Tracking 69183 as yet unmatched pairs. 16981 records in RAM.
INFO 2026-06-08 08:45:30 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:21:47s. Time for last 1,000,000: 1s. Last read position: chr21:8,397,535
INFO 2026-06-08 08:45:30 MarkDuplicates Tracking 68088 as yet unmatched pairs. 15886 records in RAM.
INFO 2026-06-08 08:45:32 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:21:48s. Time for last 1,000,000: 1s. Last read position: chr21:8,399,151
INFO 2026-06-08 08:45:32 MarkDuplicates Tracking 68230 as yet unmatched pairs. 16025 records in RAM.
INFO 2026-06-08 08:45:33 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:21:49s. Time for last 1,000,000: 1s. Last read position: chr21:8,400,426
INFO 2026-06-08 08:45:33 MarkDuplicates Tracking 66105 as yet unmatched pairs. 13898 records in RAM.
INFO 2026-06-08 08:45:34 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:21:50s. Time for last 1,000,000: 0s. Last read position: chr21:8,439,107
INFO 2026-06-08 08:45:34 MarkDuplicates Tracking 66008 as yet unmatched pairs. 13801 records in RAM.
INFO 2026-06-08 08:45:35 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:21:51s. Time for last 1,000,000: 1s. Last read position: chr21:8,441,946
INFO 2026-06-08 08:45:35 MarkDuplicates Tracking 65929 as yet unmatched pairs. 13722 records in RAM.
INFO 2026-06-08 08:45:36 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:21:52s. Time for last 1,000,000: 1s. Last read position: chr21:8,443,289
INFO 2026-06-08 08:45:36 MarkDuplicates Tracking 64937 as yet unmatched pairs. 12729 records in RAM.
INFO 2026-06-08 08:45:37 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:21:53s. Time for last 1,000,000: 1s. Last read position: chr21:8,443,375
INFO 2026-06-08 08:45:37 MarkDuplicates Tracking 62830 as yet unmatched pairs. 10622 records in RAM.
INFO 2026-06-08 08:45:38 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:21:55s. Time for last 1,000,000: 1s. Last read position: chr21:8,444,588
INFO 2026-06-08 08:45:38 MarkDuplicates Tracking 63671 as yet unmatched pairs. 11463 records in RAM.
INFO 2026-06-08 08:45:40 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:21:56s. Time for last 1,000,000: 1s. Last read position: chr21:25,362,206
INFO 2026-06-08 08:45:40 MarkDuplicates Tracking 59286 as yet unmatched pairs. 7078 records in RAM.
INFO 2026-06-08 08:45:42 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:21:58s. Time for last 1,000,000: 1s. Last read position: chr21:33,550,315
INFO 2026-06-08 08:45:42 MarkDuplicates Tracking 59548 as yet unmatched pairs. 7335 records in RAM.
INFO 2026-06-08 08:45:43 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:21:59s. Time for last 1,000,000: 1s. Last read position: chr21:38,814,324
INFO 2026-06-08 08:45:43 MarkDuplicates Tracking 58733 as yet unmatched pairs. 6519 records in RAM.
INFO 2026-06-08 08:45:45 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:22:01s. Time for last 1,000,000: 1s. Last read position: chr21:41,489,527
INFO 2026-06-08 08:45:45 MarkDuplicates Tracking 59172 as yet unmatched pairs. 6957 records in RAM.
INFO 2026-06-08 08:45:47 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:22:03s. Time for last 1,000,000: 2s. Last read position: chr21:43,688,023
INFO 2026-06-08 08:45:47 MarkDuplicates Tracking 55840 as yet unmatched pairs. 3625 records in RAM.
INFO 2026-06-08 08:45:48 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:22:05s. Time for last 1,000,000: 1s. Last read position: chr21:44,322,154
INFO 2026-06-08 08:45:48 MarkDuplicates Tracking 55546 as yet unmatched pairs. 3331 records in RAM.
INFO 2026-06-08 08:45:50 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:22:06s. Time for last 1,000,000: 1s. Last read position: chr21:45,986,658
INFO 2026-06-08 08:45:50 MarkDuplicates Tracking 53814 as yet unmatched pairs. 1596 records in RAM.
INFO 2026-06-08 08:45:52 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:22:08s. Time for last 1,000,000: 2s. Last read position: chr21:46,275,217
INFO 2026-06-08 08:45:52 MarkDuplicates Tracking 52900 as yet unmatched pairs. 682 records in RAM.
INFO 2026-06-08 08:45:54 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:22:10s. Time for last 1,000,000: 1s. Last read position: chr22:19,057,113
INFO 2026-06-08 08:45:54 MarkDuplicates Tracking 52067 as yet unmatched pairs. 18599 records in RAM.
INFO 2026-06-08 08:45:55 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:22:12s. Time for last 1,000,000: 1s. Last read position: chr22:20,431,940
INFO 2026-06-08 08:45:55 MarkDuplicates Tracking 50661 as yet unmatched pairs. 17193 records in RAM.
INFO 2026-06-08 08:45:57 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:22:13s. Time for last 1,000,000: 1s. Last read position: chr22:23,180,896
INFO 2026-06-08 08:45:57 MarkDuplicates Tracking 50099 as yet unmatched pairs. 16631 records in RAM.
INFO 2026-06-08 08:45:59 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:22:15s. Time for last 1,000,000: 1s. Last read position: chr22:23,767,559
INFO 2026-06-08 08:45:59 MarkDuplicates Tracking 49319 as yet unmatched pairs. 15851 records in RAM.
INFO 2026-06-08 08:46:00 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:22:17s. Time for last 1,000,000: 1s. Last read position: chr22:25,040,840
INFO 2026-06-08 08:46:00 MarkDuplicates Tracking 48100 as yet unmatched pairs. 14629 records in RAM.
INFO 2026-06-08 08:46:02 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:22:18s. Time for last 1,000,000: 1s. Last read position: chr22:29,296,324
INFO 2026-06-08 08:46:02 MarkDuplicates Tracking 49400 as yet unmatched pairs. 15929 records in RAM.
INFO 2026-06-08 08:46:04 MarkDuplicates Read 636,000,000 records. Elapsed time: 00:22:20s. Time for last 1,000,000: 1s. Last read position: chr22:30,345,048
INFO 2026-06-08 08:46:04 MarkDuplicates Tracking 45898 as yet unmatched pairs. 12427 records in RAM.
INFO 2026-06-08 08:46:05 MarkDuplicates Read 637,000,000 records. Elapsed time: 00:22:22s. Time for last 1,000,000: 1s. Last read position: chr22:32,395,057
INFO 2026-06-08 08:46:05 MarkDuplicates Tracking 45022 as yet unmatched pairs. 11551 records in RAM.
INFO 2026-06-08 08:46:07 MarkDuplicates Read 638,000,000 records. Elapsed time: 00:22:23s. Time for last 1,000,000: 1s. Last read position: chr22:36,300,147
INFO 2026-06-08 08:46:07 MarkDuplicates Tracking 44144 as yet unmatched pairs. 10673 records in RAM.
INFO 2026-06-08 08:46:08 MarkDuplicates Read 639,000,000 records. Elapsed time: 00:22:25s. Time for last 1,000,000: 1s. Last read position: chr22:37,516,044
INFO 2026-06-08 08:46:08 MarkDuplicates Tracking 43200 as yet unmatched pairs. 9728 records in RAM.
INFO 2026-06-08 08:46:10 MarkDuplicates Read 640,000,000 records. Elapsed time: 00:22:26s. Time for last 1,000,000: 1s. Last read position: chr22:37,967,142
INFO 2026-06-08 08:46:10 MarkDuplicates Tracking 42333 as yet unmatched pairs. 8856 records in RAM.
INFO 2026-06-08 08:46:12 MarkDuplicates Read 641,000,000 records. Elapsed time: 00:22:28s. Time for last 1,000,000: 1s. Last read position: chr22:39,512,250
INFO 2026-06-08 08:46:12 MarkDuplicates Tracking 41028 as yet unmatched pairs. 7551 records in RAM.
INFO 2026-06-08 08:46:13 MarkDuplicates Read 642,000,000 records. Elapsed time: 00:22:29s. Time for last 1,000,000: 1s. Last read position: chr22:41,246,648
INFO 2026-06-08 08:46:13 MarkDuplicates Tracking 40650 as yet unmatched pairs. 7173 records in RAM.
INFO 2026-06-08 08:46:15 MarkDuplicates Read 643,000,000 records. Elapsed time: 00:22:31s. Time for last 1,000,000: 1s. Last read position: chr22:41,945,979
INFO 2026-06-08 08:46:15 MarkDuplicates Tracking 40252 as yet unmatched pairs. 6773 records in RAM.
INFO 2026-06-08 08:46:17 MarkDuplicates Read 644,000,000 records. Elapsed time: 00:22:33s. Time for last 1,000,000: 2s. Last read position: chr22:44,024,375
INFO 2026-06-08 08:46:17 MarkDuplicates Tracking 38274 as yet unmatched pairs. 4795 records in RAM.
INFO 2026-06-08 08:46:19 MarkDuplicates Read 645,000,000 records. Elapsed time: 00:22:35s. Time for last 1,000,000: 1s. Last read position: chr22:49,904,144
INFO 2026-06-08 08:46:19 MarkDuplicates Tracking 37232 as yet unmatched pairs. 3751 records in RAM.
INFO 2026-06-08 08:46:21 MarkDuplicates Read 646,000,000 records. Elapsed time: 00:22:37s. Time for last 1,000,000: 1s. Last read position: chr22:50,283,833
INFO 2026-06-08 08:46:21 MarkDuplicates Tracking 36317 as yet unmatched pairs. 2835 records in RAM.
INFO 2026-06-08 08:46:23 MarkDuplicates Read 647,000,000 records. Elapsed time: 00:22:39s. Time for last 1,000,000: 2s. Last read position: chr22:50,503,480
INFO 2026-06-08 08:46:23 MarkDuplicates Tracking 35033 as yet unmatched pairs. 1545 records in RAM.
INFO 2026-06-08 08:46:24 MarkDuplicates Read 648,000,000 records. Elapsed time: 00:22:41s. Time for last 1,000,000: 1s. Last read position: chrX:386,431
INFO 2026-06-08 08:46:24 MarkDuplicates Tracking 33489 as yet unmatched pairs. 10287 records in RAM.
INFO 2026-06-08 08:46:26 MarkDuplicates Read 649,000,000 records. Elapsed time: 00:22:43s. Time for last 1,000,000: 1s. Last read position: chrX:11,201,986
INFO 2026-06-08 08:46:26 MarkDuplicates Tracking 32433 as yet unmatched pairs. 9231 records in RAM.
INFO 2026-06-08 08:46:28 MarkDuplicates Read 650,000,000 records. Elapsed time: 00:22:44s. Time for last 1,000,000: 1s. Last read position: chrX:40,063,911
INFO 2026-06-08 08:46:28 MarkDuplicates Tracking 31885 as yet unmatched pairs. 8636 records in RAM.
INFO 2026-06-08 08:46:29 MarkDuplicates Read 651,000,000 records. Elapsed time: 00:22:46s. Time for last 1,000,000: 1s. Last read position: chrX:45,148,508
INFO 2026-06-08 08:46:29 MarkDuplicates Tracking 31028 as yet unmatched pairs. 7778 records in RAM.
INFO 2026-06-08 08:46:31 MarkDuplicates Read 652,000,000 records. Elapsed time: 00:22:47s. Time for last 1,000,000: 1s. Last read position: chrX:48,689,356
INFO 2026-06-08 08:46:31 MarkDuplicates Tracking 30315 as yet unmatched pairs. 7065 records in RAM.
INFO 2026-06-08 08:46:32 MarkDuplicates Read 653,000,000 records. Elapsed time: 00:22:49s. Time for last 1,000,000: 1s. Last read position: chrX:53,192,326
INFO 2026-06-08 08:46:32 MarkDuplicates Tracking 29173 as yet unmatched pairs. 5923 records in RAM.
INFO 2026-06-08 08:46:34 MarkDuplicates Read 654,000,000 records. Elapsed time: 00:22:50s. Time for last 1,000,000: 1s. Last read position: chrX:57,592,444
INFO 2026-06-08 08:46:34 MarkDuplicates Tracking 28528 as yet unmatched pairs. 5278 records in RAM.
INFO 2026-06-08 08:46:36 MarkDuplicates Read 655,000,000 records. Elapsed time: 00:22:52s. Time for last 1,000,000: 1s. Last read position: chrX:71,555,253
INFO 2026-06-08 08:46:36 MarkDuplicates Tracking 27725 as yet unmatched pairs. 4474 records in RAM.
INFO 2026-06-08 08:46:37 MarkDuplicates Read 656,000,000 records. Elapsed time: 00:22:53s. Time for last 1,000,000: 1s. Last read position: chrX:101,391,757
INFO 2026-06-08 08:46:37 MarkDuplicates Tracking 27994 as yet unmatched pairs. 4740 records in RAM.
INFO 2026-06-08 08:46:39 MarkDuplicates Read 657,000,000 records. Elapsed time: 00:22:55s. Time for last 1,000,000: 1s. Last read position: chrX:129,907,426
INFO 2026-06-08 08:46:39 MarkDuplicates Tracking 26277 as yet unmatched pairs. 3022 records in RAM.
INFO 2026-06-08 08:46:41 MarkDuplicates Read 658,000,000 records. Elapsed time: 00:22:57s. Time for last 1,000,000: 1s. Last read position: chrX:153,504,794
INFO 2026-06-08 08:46:41 MarkDuplicates Tracking 25773 as yet unmatched pairs. 2516 records in RAM.
INFO 2026-06-08 08:46:42 MarkDuplicates Read 659,000,000 records. Elapsed time: 00:22:58s. Time for last 1,000,000: 1s. Last read position: chrX:154,019,294
INFO 2026-06-08 08:46:42 MarkDuplicates Tracking 25528 as yet unmatched pairs. 2270 records in RAM.
INFO 2026-06-08 08:46:44 MarkDuplicates Read 660,000,000 records. Elapsed time: 00:23:00s. Time for last 1,000,000: 1s. Last read position: chrX:154,531,966
INFO 2026-06-08 08:46:44 MarkDuplicates Tracking 23703 as yet unmatched pairs. 445 records in RAM.
INFO 2026-06-08 08:46:46 MarkDuplicates Read 661,000,000 records. Elapsed time: 00:23:02s. Time for last 1,000,000: 2s. Last read position: chrM:6,398
INFO 2026-06-08 08:46:46 MarkDuplicates Tracking 22994 as yet unmatched pairs. 294 records in RAM.
INFO 2026-06-08 08:46:47 MarkDuplicates Read 662,000,000 records. Elapsed time: 00:23:03s. Time for last 1,000,000: 1s. Last read position: GL000220.1:109,766
INFO 2026-06-08 08:46:47 MarkDuplicates Tracking 22467 as yet unmatched pairs. 4554 records in RAM.
INFO 2026-06-08 08:46:48 MarkDuplicates Read 663,000,000 records. Elapsed time: 00:23:04s. Time for last 1,000,000: 1s. Last read position: GL000220.1:113,901
INFO 2026-06-08 08:46:48 MarkDuplicates Tracking 22119 as yet unmatched pairs. 4206 records in RAM.
INFO 2026-06-08 08:46:50 MarkDuplicates Read 664,000,000 records. Elapsed time: 00:23:06s. Time for last 1,000,000: 1s. Last read position: GL000220.1:115,472
INFO 2026-06-08 08:46:50 MarkDuplicates Tracking 25451 as yet unmatched pairs. 7538 records in RAM.
INFO 2026-06-08 08:46:51 MarkDuplicates Read 665,000,000 records. Elapsed time: 00:23:07s. Time for last 1,000,000: 1s. Last read position: GL000220.1:115,554
INFO 2026-06-08 08:46:51 MarkDuplicates Tracking 18448 as yet unmatched pairs. 535 records in RAM.
INFO 2026-06-08 08:46:52 MarkDuplicates Read 666,000,000 records. Elapsed time: 00:23:08s. Time for last 1,000,000: 1s. Last read position: GL000220.1:116,760
INFO 2026-06-08 08:46:52 MarkDuplicates Tracking 18494 as yet unmatched pairs. 581 records in RAM.
INFO 2026-06-08 08:46:53 MarkDuplicates Read 667,000,000 records. Elapsed time: 00:23:09s. Time for last 1,000,000: 1s. Last read position: GL000220.1:153,736
INFO 2026-06-08 08:46:53 MarkDuplicates Tracking 18481 as yet unmatched pairs. 568 records in RAM.
INFO 2026-06-08 08:46:54 MarkDuplicates Read 668,000,000 records. Elapsed time: 00:23:10s. Time for last 1,000,000: 0s. Last read position: GL000220.1:157,837
INFO 2026-06-08 08:46:54 MarkDuplicates Tracking 18464 as yet unmatched pairs. 551 records in RAM.
INFO 2026-06-08 08:46:55 MarkDuplicates Read 669,000,000 records. Elapsed time: 00:23:11s. Time for last 1,000,000: 1s. Last read position: GL000220.1:159,439
INFO 2026-06-08 08:46:55 MarkDuplicates Tracking 18390 as yet unmatched pairs. 477 records in RAM.
INFO 2026-06-08 08:46:56 MarkDuplicates Read 670,000,000 records. Elapsed time: 00:23:12s. Time for last 1,000,000: 0s. Last read position: GL000220.1:159,526
INFO 2026-06-08 08:46:56 MarkDuplicates Tracking 17945 as yet unmatched pairs. 32 records in RAM.
INFO 2026-06-08 08:46:57 MarkDuplicates Read 671,000,000 records. Elapsed time: 00:23:13s. Time for last 1,000,000: 0s. Last read position: GL000220.1:160,730
INFO 2026-06-08 08:46:57 MarkDuplicates Tracking 17918 as yet unmatched pairs. 5 records in RAM.
INFO 2026-06-08 08:46:58 MarkDuplicates Read 672,000,000 records. Elapsed time: 00:23:14s. Time for last 1,000,000: 1s. Last read position: KI270733.1:126,245
INFO 2026-06-08 08:46:58 MarkDuplicates Tracking 17793 as yet unmatched pairs. 17785 records in RAM.
INFO 2026-06-08 08:46:59 MarkDuplicates Read 673,000,000 records. Elapsed time: 00:23:15s. Time for last 1,000,000: 1s. Last read position: KI270733.1:129,751
INFO 2026-06-08 08:46:59 MarkDuplicates Tracking 17598 as yet unmatched pairs. 17590 records in RAM.
INFO 2026-06-08 08:47:00 MarkDuplicates Read 674,000,000 records. Elapsed time: 00:23:16s. Time for last 1,000,000: 1s. Last read position: KI270733.1:131,065
INFO 2026-06-08 08:47:00 MarkDuplicates Tracking 14281 as yet unmatched pairs. 14273 records in RAM.
INFO 2026-06-08 08:47:01 MarkDuplicates Read 675,000,000 records. Elapsed time: 00:23:17s. Time for last 1,000,000: 1s. Last read position: KI270733.1:132,446
INFO 2026-06-08 08:47:01 MarkDuplicates Tracking 12622 as yet unmatched pairs. 12614 records in RAM.
INFO 2026-06-08 08:47:02 MarkDuplicates Read 676,000,000 records. Elapsed time: 00:23:19s. Time for last 1,000,000: 1s. Last read position: KI270733.1:133,659
INFO 2026-06-08 08:47:02 MarkDuplicates Tracking 11577 as yet unmatched pairs. 11569 records in RAM.
INFO 2026-06-08 08:47:04 MarkDuplicates Read 677,000,000 records. Elapsed time: 00:23:20s. Time for last 1,000,000: 1s. Last read position: KI270733.1:171,702
INFO 2026-06-08 08:47:04 MarkDuplicates Tracking 10248 as yet unmatched pairs. 10240 records in RAM.
INFO 2026-06-08 08:47:05 MarkDuplicates Read 678,000,000 records. Elapsed time: 00:23:21s. Time for last 1,000,000: 1s. Last read position: KI270733.1:174,838
INFO 2026-06-08 08:47:05 MarkDuplicates Tracking 8119 as yet unmatched pairs. 8111 records in RAM.
INFO 2026-06-08 08:47:07 MarkDuplicates Read 679,000,000 records. Elapsed time: 00:23:23s. Time for last 1,000,000: 1s. Last read position: KI270733.1:176,122
INFO 2026-06-08 08:47:07 MarkDuplicates Tracking 172 as yet unmatched pairs. 164 records in RAM.
INFO 2026-06-08 08:47:08 MarkDuplicates Read 680,000,000 records. Elapsed time: 00:23:24s. Time for last 1,000,000: 1s. Last read position: KI270733.1:177,492
INFO 2026-06-08 08:47:08 MarkDuplicates Tracking 72 as yet unmatched pairs. 64 records in RAM.
INFO 2026-06-08 08:47:09 MarkDuplicates Read 681,000,000 records. Elapsed time: 00:23:25s. Time for last 1,000,000: 0s. Last read position: KI270733.1:178,711
INFO 2026-06-08 08:47:09 MarkDuplicates Tracking 12 as yet unmatched pairs. 4 records in RAM.
INFO 2026-06-08 08:47:09 MarkDuplicates Read 681346106 records. 0 pairs never matched.
INFO 2026-06-08 08:47:56 MarkDuplicates After buildSortedReadEndLists freeMemory: 204138336; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:47:56 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 08:48:01 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 08:48:01 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:48:18 OpticalDuplicateFinder Large duplicate set. size = 1413
INFO 2026-06-08 08:48:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,567
INFO 2026-06-08 08:48:19 OpticalDuplicateFinder Large duplicate set. size = 1180
INFO 2026-06-08 08:48:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,945
INFO 2026-06-08 08:48:19 OpticalDuplicateFinder Large duplicate set. size = 1428
INFO 2026-06-08 08:48:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,401
INFO 2026-06-08 08:48:19 OpticalDuplicateFinder Large duplicate set. size = 1312
INFO 2026-06-08 08:48:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,665
INFO 2026-06-08 08:48:19 OpticalDuplicateFinder Large duplicate set. size = 1196
INFO 2026-06-08 08:48:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,480
INFO 2026-06-08 08:48:19 OpticalDuplicateFinder Large duplicate set. size = 1065
INFO 2026-06-08 08:48:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,375
INFO 2026-06-08 08:48:19 OpticalDuplicateFinder Large duplicate set. size = 1253
INFO 2026-06-08 08:48:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,240
INFO 2026-06-08 08:48:19 OpticalDuplicateFinder Large duplicate set. size = 2309
INFO 2026-06-08 08:48:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,093
INFO 2026-06-08 08:48:19 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,762
INFO 2026-06-08 08:48:19 OpticalDuplicateFinder Large duplicate set. size = 1134
INFO 2026-06-08 08:48:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,321
INFO 2026-06-08 08:48:19 OpticalDuplicateFinder Large duplicate set. size = 1098
INFO 2026-06-08 08:48:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,773
INFO 2026-06-08 08:48:30 OpticalDuplicateFinder Large duplicate set. size = 1233
INFO 2026-06-08 08:48:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,471
INFO 2026-06-08 08:48:30 OpticalDuplicateFinder Large duplicate set. size = 1003
INFO 2026-06-08 08:48:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,620
INFO 2026-06-08 08:48:31 OpticalDuplicateFinder Large duplicate set. size = 1301
INFO 2026-06-08 08:48:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,574
INFO 2026-06-08 08:48:31 OpticalDuplicateFinder Large duplicate set. size = 1161
INFO 2026-06-08 08:48:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,887
INFO 2026-06-08 08:48:31 OpticalDuplicateFinder Large duplicate set. size = 1321
INFO 2026-06-08 08:48:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,701
INFO 2026-06-08 08:48:31 OpticalDuplicateFinder Large duplicate set. size = 1839
INFO 2026-06-08 08:48:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,076
INFO 2026-06-08 08:48:31 OpticalDuplicateFinder Large duplicate set. size = 1406
INFO 2026-06-08 08:48:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,231
INFO 2026-06-08 08:48:31 OpticalDuplicateFinder Large duplicate set. size = 1488
INFO 2026-06-08 08:48:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,885
INFO 2026-06-08 08:48:31 OpticalDuplicateFinder Large duplicate set. size = 2074
INFO 2026-06-08 08:48:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,090
INFO 2026-06-08 08:48:31 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,955
INFO 2026-06-08 08:48:31 OpticalDuplicateFinder Large duplicate set. size = 1654
INFO 2026-06-08 08:48:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,430
INFO 2026-06-08 08:48:31 OpticalDuplicateFinder Large duplicate set. size = 1085
INFO 2026-06-08 08:48:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,690
INFO 2026-06-08 08:48:31 OpticalDuplicateFinder Large duplicate set. size = 1003
INFO 2026-06-08 08:48:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,540
INFO 2026-06-08 08:48:31 OpticalDuplicateFinder Large duplicate set. size = 1115
INFO 2026-06-08 08:48:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,161
INFO 2026-06-08 08:48:31 OpticalDuplicateFinder Large duplicate set. size = 1514
INFO 2026-06-08 08:48:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,489
INFO 2026-06-08 08:48:31 OpticalDuplicateFinder Large duplicate set. size = 1293
INFO 2026-06-08 08:48:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,929
INFO 2026-06-08 08:48:31 OpticalDuplicateFinder Large duplicate set. size = 1276
INFO 2026-06-08 08:48:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,346
INFO 2026-06-08 08:48:31 OpticalDuplicateFinder Large duplicate set. size = 1417
INFO 2026-06-08 08:48:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,174
INFO 2026-06-08 08:48:31 OpticalDuplicateFinder Large duplicate set. size = 1255
INFO 2026-06-08 08:48:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,228
INFO 2026-06-08 08:48:31 OpticalDuplicateFinder Large duplicate set. size = 1249
INFO 2026-06-08 08:48:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,909
INFO 2026-06-08 08:48:47 OpticalDuplicateFinder Large duplicate set. size = 1207
INFO 2026-06-08 08:48:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,963
INFO 2026-06-08 08:48:47 OpticalDuplicateFinder Large duplicate set. size = 1054
INFO 2026-06-08 08:48:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,456
INFO 2026-06-08 08:48:47 OpticalDuplicateFinder Large duplicate set. size = 1357
INFO 2026-06-08 08:48:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,349
INFO 2026-06-08 08:48:47 OpticalDuplicateFinder Large duplicate set. size = 1203
INFO 2026-06-08 08:48:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,623
INFO 2026-06-08 08:48:47 OpticalDuplicateFinder Large duplicate set. size = 1010
INFO 2026-06-08 08:48:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,313
INFO 2026-06-08 08:48:47 OpticalDuplicateFinder Large duplicate set. size = 1126
INFO 2026-06-08 08:48:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,915
INFO 2026-06-08 08:48:47 OpticalDuplicateFinder Large duplicate set. size = 1226
INFO 2026-06-08 08:48:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,588
INFO 2026-06-08 08:48:47 OpticalDuplicateFinder Large duplicate set. size = 1090
INFO 2026-06-08 08:48:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,326
INFO 2026-06-08 08:48:47 OpticalDuplicateFinder Large duplicate set. size = 1041
INFO 2026-06-08 08:48:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,561
INFO 2026-06-08 08:48:47 OpticalDuplicateFinder Large duplicate set. size = 1062
INFO 2026-06-08 08:48:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,820
INFO 2026-06-08 08:48:47 OpticalDuplicateFinder Large duplicate set. size = 1267
INFO 2026-06-08 08:48:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,424
INFO 2026-06-08 08:48:47 OpticalDuplicateFinder Large duplicate set. size = 1046
INFO 2026-06-08 08:48:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,124
INFO 2026-06-08 08:48:47 OpticalDuplicateFinder Large duplicate set. size = 1108
INFO 2026-06-08 08:48:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,195
INFO 2026-06-08 08:48:58 OpticalDuplicateFinder Large duplicate set. size = 1097
INFO 2026-06-08 08:48:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,305
INFO 2026-06-08 08:48:59 OpticalDuplicateFinder Large duplicate set. size = 1208
INFO 2026-06-08 08:48:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,900
INFO 2026-06-08 08:48:59 OpticalDuplicateFinder Large duplicate set. size = 1080
INFO 2026-06-08 08:48:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,468
INFO 2026-06-08 08:48:59 OpticalDuplicateFinder Large duplicate set. size = 1189
INFO 2026-06-08 08:48:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,390
INFO 2026-06-08 08:48:59 OpticalDuplicateFinder Large duplicate set. size = 1201
INFO 2026-06-08 08:48:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,338
INFO 2026-06-08 08:48:59 OpticalDuplicateFinder Large duplicate set. size = 1133
INFO 2026-06-08 08:48:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,967
INFO 2026-06-08 08:48:59 OpticalDuplicateFinder Large duplicate set. size = 1605
INFO 2026-06-08 08:48:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,241
INFO 2026-06-08 08:48:59 OpticalDuplicateFinder Large duplicate set. size = 2183
INFO 2026-06-08 08:48:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,118
INFO 2026-06-08 08:48:59 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,690
INFO 2026-06-08 08:48:59 OpticalDuplicateFinder Large duplicate set. size = 1017
INFO 2026-06-08 08:48:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,635
INFO 2026-06-08 08:48:59 OpticalDuplicateFinder Large duplicate set. size = 1159
INFO 2026-06-08 08:48:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,657
INFO 2026-06-08 08:48:59 OpticalDuplicateFinder Large duplicate set. size = 1046
INFO 2026-06-08 08:48:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,536
INFO 2026-06-08 08:49:00 OpticalDuplicateFinder Large duplicate set. size = 1442
INFO 2026-06-08 08:49:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,176
INFO 2026-06-08 08:49:00 OpticalDuplicateFinder Large duplicate set. size = 1759
INFO 2026-06-08 08:49:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,611
INFO 2026-06-08 08:49:00 OpticalDuplicateFinder Large duplicate set. size = 2157
INFO 2026-06-08 08:49:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,405
INFO 2026-06-08 08:49:00 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,606
INFO 2026-06-08 08:49:00 OpticalDuplicateFinder Large duplicate set. size = 1064
INFO 2026-06-08 08:49:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,415
INFO 2026-06-08 08:49:28 OpticalDuplicateFinder Large duplicate set. size = 1065
INFO 2026-06-08 08:49:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,170
INFO 2026-06-08 08:49:28 OpticalDuplicateFinder Large duplicate set. size = 1466
INFO 2026-06-08 08:49:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,021
INFO 2026-06-08 08:49:28 OpticalDuplicateFinder Large duplicate set. size = 1031
INFO 2026-06-08 08:49:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,021
INFO 2026-06-08 08:49:28 OpticalDuplicateFinder Large duplicate set. size = 1228
INFO 2026-06-08 08:49:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,701
INFO 2026-06-08 08:49:28 OpticalDuplicateFinder Large duplicate set. size = 1028
INFO 2026-06-08 08:49:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,289
INFO 2026-06-08 08:49:28 OpticalDuplicateFinder Large duplicate set. size = 1192
INFO 2026-06-08 08:49:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,558
INFO 2026-06-08 08:49:33 OpticalDuplicateFinder Large duplicate set. size = 1064
INFO 2026-06-08 08:49:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,047
INFO 2026-06-08 08:49:33 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 08:49:33 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:50:33 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 08:50:36 MarkDuplicates After generateDuplicateIndexes freeMemory: 203916736; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:50:36 MarkDuplicates Marking 324586736 records as duplicates.
INFO 2026-06-08 08:50:36 MarkDuplicates Found 21706672 optical duplicate clusters.
INFO 2026-06-08 08:50:36 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 08:50:52 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:16s. Time for last 10,000,000: 16s. Last read position: chr1:16,968,357
INFO 2026-06-08 08:51:08 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:31s. Time for last 10,000,000: 15s. Last read position: chr1:35,192,501
INFO 2026-06-08 08:51:23 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:46s. Time for last 10,000,000: 15s. Last read position: chr1:108,693,513
INFO 2026-06-08 08:51:38 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:02s. Time for last 10,000,000: 15s. Last read position: chr1:154,176,131
INFO 2026-06-08 08:51:54 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:18s. Time for last 10,000,000: 16s. Last read position: chr1:200,409,361
INFO 2026-06-08 08:52:10 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:33s. Time for last 10,000,000: 15s. Last read position: chr2:9,630,249
INFO 2026-06-08 08:52:25 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:49s. Time for last 10,000,000: 15s. Last read position: chr2:69,984,157
INFO 2026-06-08 08:52:41 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:04s. Time for last 10,000,000: 15s. Last read position: chr2:160,298,062
INFO 2026-06-08 08:52:56 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:19s. Time for last 10,000,000: 15s. Last read position: chr2:230,370,913
INFO 2026-06-08 08:53:11 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:35s. Time for last 10,000,000: 15s. Last read position: chr3:43,561,342
INFO 2026-06-08 08:53:27 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:02:51s. Time for last 10,000,000: 15s. Last read position: chr3:100,748,201
INFO 2026-06-08 08:53:43 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:06s. Time for last 10,000,000: 15s. Last read position: chr3:195,781,570
INFO 2026-06-08 08:53:58 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:22s. Time for last 10,000,000: 15s. Last read position: chr4:73,869,524
INFO 2026-06-08 08:54:14 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:37s. Time for last 10,000,000: 15s. Last read position: chr5:37,139,726
INFO 2026-06-08 08:54:29 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:03:53s. Time for last 10,000,000: 15s. Last read position: chr5:150,132,779
INFO 2026-06-08 08:54:45 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:08s. Time for last 10,000,000: 15s. Last read position: chr5:179,799,202
INFO 2026-06-08 08:55:00 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:24s. Time for last 10,000,000: 15s. Last read position: chr6:31,154,531
INFO 2026-06-08 08:55:15 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:39s. Time for last 10,000,000: 15s. Last read position: chr6:35,469,000
INFO 2026-06-08 08:55:31 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:04:55s. Time for last 10,000,000: 15s. Last read position: chr6:156,779,128
INFO 2026-06-08 08:55:47 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:10s. Time for last 10,000,000: 15s. Last read position: chr7:30,755,594
INFO 2026-06-08 08:56:02 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:26s. Time for last 10,000,000: 15s. Last read position: chr7:99,358,340
INFO 2026-06-08 08:56:17 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:41s. Time for last 10,000,000: 15s. Last read position: chr7:139,269,432
INFO 2026-06-08 08:56:33 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:05:56s. Time for last 10,000,000: 15s. Last read position: chr8:38,105,634
INFO 2026-06-08 08:56:48 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:12s. Time for last 10,000,000: 15s. Last read position: chr8:143,858,245
INFO 2026-06-08 08:57:03 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:27s. Time for last 10,000,000: 14s. Last read position: chr8:143,864,744
INFO 2026-06-08 08:57:19 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:06:42s. Time for last 10,000,000: 15s. Last read position: chr9:9,442,147
INFO 2026-06-08 08:57:34 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:06:58s. Time for last 10,000,000: 15s. Last read position: chr9:114,368,438
INFO 2026-06-08 08:57:50 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:13s. Time for last 10,000,000: 15s. Last read position: chr9:136,505,532
INFO 2026-06-08 08:58:05 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:29s. Time for last 10,000,000: 15s. Last read position: chr10:71,288,693
INFO 2026-06-08 08:58:21 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:07:44s. Time for last 10,000,000: 15s. Last read position: chr10:128,103,103
INFO 2026-06-08 08:58:36 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:00s. Time for last 10,000,000: 15s. Last read position: chr11:1,243,935
INFO 2026-06-08 08:58:51 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:14s. Time for last 10,000,000: 14s. Last read position: chr11:1,754,025
INFO 2026-06-08 08:59:06 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:08:30s. Time for last 10,000,000: 15s. Last read position: chr11:60,951,089
INFO 2026-06-08 08:59:22 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:08:45s. Time for last 10,000,000: 15s. Last read position: chr11:66,315,484
INFO 2026-06-08 08:59:37 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:01s. Time for last 10,000,000: 15s. Last read position: chr11:119,048,856
INFO 2026-06-08 08:59:53 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:16s. Time for last 10,000,000: 15s. Last read position: chr12:44,920,768
INFO 2026-06-08 09:00:08 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:09:32s. Time for last 10,000,000: 15s. Last read position: chr12:57,096,630
INFO 2026-06-08 09:00:24 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:09:48s. Time for last 10,000,000: 15s. Last read position: chr12:120,221,704
INFO 2026-06-08 09:00:40 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:03s. Time for last 10,000,000: 15s. Last read position: chr13:51,452,432
INFO 2026-06-08 09:00:55 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:10:19s. Time for last 10,000,000: 15s. Last read position: chr14:49,586,688
INFO 2026-06-08 09:01:10 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:10:34s. Time for last 10,000,000: 15s. Last read position: chr14:102,030,213
INFO 2026-06-08 09:01:26 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:10:50s. Time for last 10,000,000: 15s. Last read position: chr15:43,792,978
INFO 2026-06-08 09:01:42 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:05s. Time for last 10,000,000: 15s. Last read position: chr15:89,903,909
INFO 2026-06-08 09:01:57 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:11:21s. Time for last 10,000,000: 15s. Last read position: chr16:3,120,053
INFO 2026-06-08 09:02:13 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:11:36s. Time for last 10,000,000: 15s. Last read position: chr16:24,789,779
INFO 2026-06-08 09:02:28 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:11:52s. Time for last 10,000,000: 15s. Last read position: chr16:56,829,028
INFO 2026-06-08 09:02:44 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:12:07s. Time for last 10,000,000: 15s. Last read position: chr16:88,716,046
INFO 2026-06-08 09:02:59 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:12:23s. Time for last 10,000,000: 15s. Last read position: chr17:7,387,140
INFO 2026-06-08 09:03:15 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:12:39s. Time for last 10,000,000: 15s. Last read position: chr17:37,731,729
INFO 2026-06-08 09:03:31 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:12:54s. Time for last 10,000,000: 15s. Last read position: chr17:49,244,778
INFO 2026-06-08 09:03:46 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:13:10s. Time for last 10,000,000: 15s. Last read position: chr17:50,195,926
INFO 2026-06-08 09:04:03 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:13:26s. Time for last 10,000,000: 16s. Last read position: chr17:75,543,433
INFO 2026-06-08 09:04:18 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:13:42s. Time for last 10,000,000: 15s. Last read position: chr17:82,084,585
INFO 2026-06-08 09:04:34 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:13:58s. Time for last 10,000,000: 15s. Last read position: chr19:1,254,416
INFO 2026-06-08 09:04:49 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:14:13s. Time for last 10,000,000: 15s. Last read position: chr19:8,403,735
INFO 2026-06-08 09:05:05 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:14:29s. Time for last 10,000,000: 15s. Last read position: chr19:17,059,628
INFO 2026-06-08 09:05:20 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:14:44s. Time for last 10,000,000: 15s. Last read position: chr19:39,433,288
INFO 2026-06-08 09:05:36 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:14:59s. Time for last 10,000,000: 15s. Last read position: chr19:47,500,643
INFO 2026-06-08 09:05:51 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:15:15s. Time for last 10,000,000: 15s. Last read position: chr19:55,694,790
INFO 2026-06-08 09:06:07 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:15:30s. Time for last 10,000,000: 15s. Last read position: chr20:49,223,428
INFO 2026-06-08 09:06:22 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:15:45s. Time for last 10,000,000: 14s. Last read position: chr21:8,253,194
INFO 2026-06-08 09:06:36 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:15:59s. Time for last 10,000,000: 13s. Last read position: chr21:8,443,375
INFO 2026-06-08 09:06:51 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:16:14s. Time for last 10,000,000: 15s. Last read position: chr22:19,057,113
INFO 2026-06-08 09:07:08 MarkDuplicates Written 640,000,000 records. Elapsed time: 00:16:32s. Time for last 10,000,000: 17s. Last read position: chr22:37,967,142
INFO 2026-06-08 09:07:26 MarkDuplicates Written 650,000,000 records. Elapsed time: 00:16:49s. Time for last 10,000,000: 17s. Last read position: chrX:40,063,911
INFO 2026-06-08 09:07:42 MarkDuplicates Written 660,000,000 records. Elapsed time: 00:17:06s. Time for last 10,000,000: 16s. Last read position: chrX:154,531,966
INFO 2026-06-08 09:07:57 MarkDuplicates Written 670,000,000 records. Elapsed time: 00:17:20s. Time for last 10,000,000: 14s. Last read position: GL000220.1:159,526
INFO 2026-06-08 09:08:11 MarkDuplicates Written 680,000,000 records. Elapsed time: 00:17:34s. Time for last 10,000,000: 14s. Last read position: KI270733.1:177,492
INFO 2026-06-08 09:08:27 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:08:27 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:08:27 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:08:27 MarkDuplicates Before output close freeMemory: 203916168; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:08:27 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:08:27 MarkDuplicates After output close freeMemory: 104134640; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:08:27 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 44.77 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory