File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/14/7e9232a0a5aefa6a874b898f21abd4/.command.log
Size
744 bytes
Task
NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION (tih_rna_sample_00088_23H5VFLT4_s02)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/05128f2c5fc468ecdf5f77738c27f5/tih_rna_sample_00088_23H5VFLT4_s02.features.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/14/7e9232a0a5aefa6a874b898f21abd4/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/14/7e9232a0a5aefa6a874b898f21abd4/.command.run
==> STAGING COMPLETE (3 inputs)

Predicting contamination for 1 sample(s)...
Detection threshold: VAF_p90 < 0.9999
Level estimation: contamination_pct = -215.87 * vaf_p90 + 215.65

  tih_rna_sample_00088_23H5VFLT4_s02: vaf_p90=0.999434 -> CONTAMINATED (~0.0%)

Output saved to: tih_rna_sample_00088_23H5VFLT4_s02.predictions.csv
Summary: 1/1 samples flagged as contaminated