Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT tih_rna_sample_00096_23H5VFLT4_s11.Aligned.sortedByCoord.out.bam --OUTPUT tih_rna_sample_00096_23H5VFLT4_s11.md.bam --METRICS_FILE tih_rna_sample_00096_23H5VFLT4_s11.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:22:43.293 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:22:43 GMT 2026] MarkDuplicates --INPUT tih_rna_sample_00096_23H5VFLT4_s11.Aligned.sortedByCoord.out.bam --OUTPUT tih_rna_sample_00096_23H5VFLT4_s11.md.bam --METRICS_FILE tih_rna_sample_00096_23H5VFLT4_s11.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:22:43 GMT 2026] Executing as ?@nf-1153725f47c077dc8a0a9059d53c5eb5-0caa5-qx8cj on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:22:43 MarkDuplicates Start of doWork freeMemory: 105493160; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:22:43 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:22:43 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:22:48 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 3s. Last read position: chr1:1,300,189
INFO 2026-06-08 08:22:48 MarkDuplicates Tracking 1266 as yet unmatched pairs. 331 records in RAM.
INFO 2026-06-08 08:22:51 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 3s. Last read position: chr1:1,790,556
INFO 2026-06-08 08:22:51 MarkDuplicates Tracking 2847 as yet unmatched pairs. 811 records in RAM.
INFO 2026-06-08 08:22:54 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 2s. Last read position: chr1:6,599,261
INFO 2026-06-08 08:22:54 MarkDuplicates Tracking 3814 as yet unmatched pairs. 709 records in RAM.
INFO 2026-06-08 08:22:56 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 2s. Last read position: chr1:10,158,274
INFO 2026-06-08 08:22:56 MarkDuplicates Tracking 4136 as yet unmatched pairs. 141 records in RAM.
INFO 2026-06-08 08:22:59 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 2s. Last read position: chr1:12,031,745
INFO 2026-06-08 08:22:59 MarkDuplicates Tracking 5049 as yet unmatched pairs. 96 records in RAM.
INFO 2026-06-08 08:23:01 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 2s. Last read position: chr1:16,895,988
INFO 2026-06-08 08:23:01 MarkDuplicates Tracking 5688 as yet unmatched pairs. 31 records in RAM.
INFO 2026-06-08 08:23:05 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 3s. Last read position: chr1:20,949,981
INFO 2026-06-08 08:23:05 MarkDuplicates Tracking 6715 as yet unmatched pairs. 179 records in RAM.
INFO 2026-06-08 08:23:07 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 2s. Last read position: chr1:22,638,978
INFO 2026-06-08 08:23:07 MarkDuplicates Tracking 9956 as yet unmatched pairs. 2418 records in RAM.
INFO 2026-06-08 08:23:09 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 2s. Last read position: chr1:25,498,383
INFO 2026-06-08 08:23:09 MarkDuplicates Tracking 8476 as yet unmatched pairs. 164 records in RAM.
INFO 2026-06-08 08:23:12 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 2s. Last read position: chr1:27,668,283
INFO 2026-06-08 08:23:12 MarkDuplicates Tracking 10609 as yet unmatched pairs. 1359 records in RAM.
INFO 2026-06-08 08:23:14 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 2s. Last read position: chr1:31,183,859
INFO 2026-06-08 08:23:14 MarkDuplicates Tracking 11517 as yet unmatched pairs. 1388 records in RAM.
INFO 2026-06-08 08:23:17 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 2s. Last read position: chr1:32,334,596
INFO 2026-06-08 08:23:17 MarkDuplicates Tracking 11838 as yet unmatched pairs. 682 records in RAM.
INFO 2026-06-08 08:23:19 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:35,190,724
INFO 2026-06-08 08:23:19 MarkDuplicates Tracking 14120 as yet unmatched pairs. 2091 records in RAM.
INFO 2026-06-08 08:23:21 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 2s. Last read position: chr1:36,322,428
INFO 2026-06-08 08:23:21 MarkDuplicates Tracking 13933 as yet unmatched pairs. 894 records in RAM.
INFO 2026-06-08 08:23:23 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 2s. Last read position: chr1:39,453,786
INFO 2026-06-08 08:23:23 MarkDuplicates Tracking 14350 as yet unmatched pairs. 478 records in RAM.
INFO 2026-06-08 08:23:26 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 3s. Last read position: chr1:41,048,810
INFO 2026-06-08 08:23:26 MarkDuplicates Tracking 15377 as yet unmatched pairs. 639 records in RAM.
INFO 2026-06-08 08:23:29 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 3s. Last read position: chr1:43,591,235
INFO 2026-06-08 08:23:29 MarkDuplicates Tracking 18478 as yet unmatched pairs. 2844 records in RAM.
INFO 2026-06-08 08:23:32 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 2s. Last read position: chr1:45,014,492
INFO 2026-06-08 08:23:32 MarkDuplicates Tracking 17320 as yet unmatched pairs. 744 records in RAM.
INFO 2026-06-08 08:23:34 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 2s. Last read position: chr1:46,813,917
INFO 2026-06-08 08:23:34 MarkDuplicates Tracking 17805 as yet unmatched pairs. 368 records in RAM.
INFO 2026-06-08 08:23:36 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 2s. Last read position: chr1:53,210,633
INFO 2026-06-08 08:23:36 MarkDuplicates Tracking 18550 as yet unmatched pairs. 317 records in RAM.
INFO 2026-06-08 08:23:38 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:61,277,569
INFO 2026-06-08 08:23:38 MarkDuplicates Tracking 20167 as yet unmatched pairs. 1075 records in RAM.
INFO 2026-06-08 08:23:40 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:70,927,031
INFO 2026-06-08 08:23:40 MarkDuplicates Tracking 19902 as yet unmatched pairs. 122 records in RAM.
INFO 2026-06-08 08:23:43 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 2s. Last read position: chr1:86,880,711
INFO 2026-06-08 08:23:43 MarkDuplicates Tracking 21344 as yet unmatched pairs. 825 records in RAM.
INFO 2026-06-08 08:23:45 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:94,489,770
INFO 2026-06-08 08:23:45 MarkDuplicates Tracking 22120 as yet unmatched pairs. 929 records in RAM.
INFO 2026-06-08 08:23:47 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 2s. Last read position: chr1:108,950,324
INFO 2026-06-08 08:23:47 MarkDuplicates Tracking 22340 as yet unmatched pairs. 451 records in RAM.
INFO 2026-06-08 08:23:48 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:109,738,116
INFO 2026-06-08 08:23:48 MarkDuplicates Tracking 25403 as yet unmatched pairs. 2684 records in RAM.
INFO 2026-06-08 08:23:50 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:113,164,901
INFO 2026-06-08 08:23:50 MarkDuplicates Tracking 23597 as yet unmatched pairs. 67 records in RAM.
INFO 2026-06-08 08:23:53 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 2s. Last read position: chr1:114,737,470
INFO 2026-06-08 08:23:53 MarkDuplicates Tracking 25350 as yet unmatched pairs. 1047 records in RAM.
INFO 2026-06-08 08:23:55 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:119,923,763
INFO 2026-06-08 08:23:55 MarkDuplicates Tracking 26244 as yet unmatched pairs. 1190 records in RAM.
INFO 2026-06-08 08:23:57 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:121,374,832
INFO 2026-06-08 08:23:57 MarkDuplicates Tracking 25998 as yet unmatched pairs. 300 records in RAM.
INFO 2026-06-08 08:23:58 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:146,087,735
INFO 2026-06-08 08:23:58 MarkDuplicates Tracking 26261 as yet unmatched pairs. 104 records in RAM.
INFO 2026-06-08 08:24:00 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:148,117,679
INFO 2026-06-08 08:24:00 MarkDuplicates Tracking 26980 as yet unmatched pairs. 477 records in RAM.
INFO 2026-06-08 08:24:02 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:149,455,391
INFO 2026-06-08 08:24:02 MarkDuplicates Tracking 28829 as yet unmatched pairs. 2006 records in RAM.
INFO 2026-06-08 08:24:03 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:150,092,361
INFO 2026-06-08 08:24:03 MarkDuplicates Tracking 27637 as yet unmatched pairs. 304 records in RAM.
INFO 2026-06-08 08:24:05 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 2s. Last read position: chr1:150,966,520
INFO 2026-06-08 08:24:05 MarkDuplicates Tracking 29148 as yet unmatched pairs. 1023 records in RAM.
INFO 2026-06-08 08:24:07 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:151,408,701
INFO 2026-06-08 08:24:07 MarkDuplicates Tracking 29222 as yet unmatched pairs. 258 records in RAM.
INFO 2026-06-08 08:24:09 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:153,813,384
INFO 2026-06-08 08:24:09 MarkDuplicates Tracking 30102 as yet unmatched pairs. 367 records in RAM.
INFO 2026-06-08 08:24:12 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 2s. Last read position: chr1:154,183,012
INFO 2026-06-08 08:24:12 MarkDuplicates Tracking 32406 as yet unmatched pairs. 1987 records in RAM.
INFO 2026-06-08 08:24:14 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 2s. Last read position: chr1:154,974,758
INFO 2026-06-08 08:24:14 MarkDuplicates Tracking 31794 as yet unmatched pairs. 572 records in RAM.
INFO 2026-06-08 08:24:16 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:155,204,846
INFO 2026-06-08 08:24:16 MarkDuplicates Tracking 32455 as yet unmatched pairs. 397 records in RAM.
INFO 2026-06-08 08:24:18 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:155,660,562
INFO 2026-06-08 08:24:18 MarkDuplicates Tracking 33841 as yet unmatched pairs. 991 records in RAM.
INFO 2026-06-08 08:24:19 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:156,135,891
INFO 2026-06-08 08:24:19 MarkDuplicates Tracking 35424 as yet unmatched pairs. 1685 records in RAM.
INFO 2026-06-08 08:24:22 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 2s. Last read position: chr1:156,659,003
INFO 2026-06-08 08:24:22 MarkDuplicates Tracking 34816 as yet unmatched pairs. 164 records in RAM.
INFO 2026-06-08 08:24:23 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr1:159,919,702
INFO 2026-06-08 08:24:23 MarkDuplicates Tracking 36611 as yet unmatched pairs. 1105 records in RAM.
INFO 2026-06-08 08:24:25 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr1:161,098,739
INFO 2026-06-08 08:24:25 MarkDuplicates Tracking 36562 as yet unmatched pairs. 215 records in RAM.
INFO 2026-06-08 08:24:27 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 2s. Last read position: chr1:161,863,197
INFO 2026-06-08 08:24:27 MarkDuplicates Tracking 37553 as yet unmatched pairs. 564 records in RAM.
INFO 2026-06-08 08:24:29 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr1:165,728,051
INFO 2026-06-08 08:24:29 MarkDuplicates Tracking 38183 as yet unmatched pairs. 396 records in RAM.
INFO 2026-06-08 08:24:31 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 2s. Last read position: chr1:169,862,756
INFO 2026-06-08 08:24:31 MarkDuplicates Tracking 38638 as yet unmatched pairs. 116 records in RAM.
INFO 2026-06-08 08:24:34 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 2s. Last read position: chr1:173,947,391
INFO 2026-06-08 08:24:34 MarkDuplicates Tracking 39502 as yet unmatched pairs. 280 records in RAM.
INFO 2026-06-08 08:24:36 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr1:179,908,640
INFO 2026-06-08 08:24:36 MarkDuplicates Tracking 40616 as yet unmatched pairs. 643 records in RAM.
INFO 2026-06-08 08:24:38 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 2s. Last read position: chr1:182,385,449
INFO 2026-06-08 08:24:38 MarkDuplicates Tracking 42643 as yet unmatched pairs. 1777 records in RAM.
INFO 2026-06-08 08:24:40 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr1:186,095,392
INFO 2026-06-08 08:24:40 MarkDuplicates Tracking 41710 as yet unmatched pairs. 67 records in RAM.
INFO 2026-06-08 08:24:42 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr1:193,203,661
INFO 2026-06-08 08:24:42 MarkDuplicates Tracking 42499 as yet unmatched pairs. 242 records in RAM.
INFO 2026-06-08 08:24:44 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr1:201,649,297
INFO 2026-06-08 08:24:44 MarkDuplicates Tracking 44162 as yet unmatched pairs. 1138 records in RAM.
INFO 2026-06-08 08:24:46 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr1:202,892,443
INFO 2026-06-08 08:24:46 MarkDuplicates Tracking 44240 as yet unmatched pairs. 376 records in RAM.
INFO 2026-06-08 08:24:48 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr1:204,099,916
INFO 2026-06-08 08:24:48 MarkDuplicates Tracking 45246 as yet unmatched pairs. 712 records in RAM.
INFO 2026-06-08 08:24:49 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr1:205,152,056
INFO 2026-06-08 08:24:49 MarkDuplicates Tracking 45469 as yet unmatched pairs. 140 records in RAM.
INFO 2026-06-08 08:24:51 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr1:207,770,339
INFO 2026-06-08 08:24:51 MarkDuplicates Tracking 49261 as yet unmatched pairs. 3206 records in RAM.
INFO 2026-06-08 08:24:53 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 2s. Last read position: chr1:213,002,775
INFO 2026-06-08 08:24:53 MarkDuplicates Tracking 47037 as yet unmatched pairs. 172 records in RAM.
INFO 2026-06-08 08:24:56 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 2s. Last read position: chr1:221,739,468
INFO 2026-06-08 08:24:56 MarkDuplicates Tracking 47868 as yet unmatched pairs. 276 records in RAM.
INFO 2026-06-08 08:24:57 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr1:225,265,245
INFO 2026-06-08 08:24:57 MarkDuplicates Tracking 48434 as yet unmatched pairs. 144 records in RAM.
INFO 2026-06-08 08:24:59 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 2s. Last read position: chr1:227,732,941
INFO 2026-06-08 08:24:59 MarkDuplicates Tracking 49572 as yet unmatched pairs. 488 records in RAM.
INFO 2026-06-08 08:25:01 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 2s. Last read position: chr1:231,337,369
INFO 2026-06-08 08:25:01 MarkDuplicates Tracking 50261 as yet unmatched pairs. 97 records in RAM.
INFO 2026-06-08 08:25:03 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr1:235,759,502
INFO 2026-06-08 08:25:03 MarkDuplicates Tracking 51276 as yet unmatched pairs. 84 records in RAM.
INFO 2026-06-08 08:25:05 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr1:244,860,410
INFO 2026-06-08 08:25:05 MarkDuplicates Tracking 54637 as yet unmatched pairs. 2748 records in RAM.
INFO 2026-06-08 08:25:08 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 2s. Last read position: chr2:1,673,713
INFO 2026-06-08 08:25:08 MarkDuplicates Tracking 52923 as yet unmatched pairs. 50618 records in RAM.
INFO 2026-06-08 08:25:09 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:11,566,599
INFO 2026-06-08 08:25:09 MarkDuplicates Tracking 55291 as yet unmatched pairs. 52949 records in RAM.
INFO 2026-06-08 08:25:11 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:20,203,990
INFO 2026-06-08 08:25:11 MarkDuplicates Tracking 57191 as yet unmatched pairs. 54814 records in RAM.
INFO 2026-06-08 08:25:13 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 2s. Last read position: chr2:25,131,362
INFO 2026-06-08 08:25:13 MarkDuplicates Tracking 55413 as yet unmatched pairs. 52990 records in RAM.
INFO 2026-06-08 08:25:15 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 2s. Last read position: chr2:27,370,703
INFO 2026-06-08 08:25:15 MarkDuplicates Tracking 56510 as yet unmatched pairs. 54038 records in RAM.
INFO 2026-06-08 08:25:17 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:32,433,792
INFO 2026-06-08 08:25:17 MarkDuplicates Tracking 57350 as yet unmatched pairs. 54837 records in RAM.
INFO 2026-06-08 08:25:19 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:25:19 MarkDuplicates Tracking 404450 as yet unmatched pairs. 29851 records in RAM.
INFO 2026-06-08 08:25:22 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 2s. Last read position: chr2:36,883,972
INFO 2026-06-08 08:25:22 MarkDuplicates Tracking 463039 as yet unmatched pairs. 25874 records in RAM.
INFO 2026-06-08 08:25:24 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 2s. Last read position: chr2:43,292,851
INFO 2026-06-08 08:25:24 MarkDuplicates Tracking 462466 as yet unmatched pairs. 25278 records in RAM.
INFO 2026-06-08 08:25:26 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr2:47,832,395
INFO 2026-06-08 08:25:26 MarkDuplicates Tracking 461734 as yet unmatched pairs. 24495 records in RAM.
INFO 2026-06-08 08:25:28 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 2s. Last read position: chr2:55,640,638
INFO 2026-06-08 08:25:28 MarkDuplicates Tracking 460973 as yet unmatched pairs. 23697 records in RAM.
INFO 2026-06-08 08:25:30 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:64,990,057
INFO 2026-06-08 08:25:30 MarkDuplicates Tracking 460532 as yet unmatched pairs. 23235 records in RAM.
INFO 2026-06-08 08:25:31 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr2:71,348,957
INFO 2026-06-08 08:25:31 MarkDuplicates Tracking 459754 as yet unmatched pairs. 22409 records in RAM.
INFO 2026-06-08 08:25:33 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 2s. Last read position: chr2:74,415,583
INFO 2026-06-08 08:25:33 MarkDuplicates Tracking 458551 as yet unmatched pairs. 21176 records in RAM.
INFO 2026-06-08 08:25:36 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 2s. Last read position: chr2:85,390,812
INFO 2026-06-08 08:25:36 MarkDuplicates Tracking 457847 as yet unmatched pairs. 20439 records in RAM.
INFO 2026-06-08 08:25:38 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr2:88,698,487
INFO 2026-06-08 08:25:38 MarkDuplicates Tracking 457202 as yet unmatched pairs. 19779 records in RAM.
INFO 2026-06-08 08:25:40 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 2s. Last read position: chr2:96,816,371
INFO 2026-06-08 08:25:40 MarkDuplicates Tracking 456340 as yet unmatched pairs. 18877 records in RAM.
INFO 2026-06-08 08:25:42 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 2s. Last read position: chr2:99,593,827
INFO 2026-06-08 08:25:42 MarkDuplicates Tracking 456907 as yet unmatched pairs. 19410 records in RAM.
INFO 2026-06-08 08:25:44 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr2:107,838,953
INFO 2026-06-08 08:25:44 MarkDuplicates Tracking 454958 as yet unmatched pairs. 17412 records in RAM.
INFO 2026-06-08 08:25:46 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 2s. Last read position: chr2:109,844,729
INFO 2026-06-08 08:25:46 MarkDuplicates Tracking 454506 as yet unmatched pairs. 16948 records in RAM.
INFO 2026-06-08 08:25:48 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr2:112,661,161
INFO 2026-06-08 08:25:48 MarkDuplicates Tracking 454970 as yet unmatched pairs. 17391 records in RAM.
INFO 2026-06-08 08:25:50 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr2:127,338,987
INFO 2026-06-08 08:25:50 MarkDuplicates Tracking 453799 as yet unmatched pairs. 16194 records in RAM.
INFO 2026-06-08 08:25:52 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr2:131,532,925
INFO 2026-06-08 08:25:52 MarkDuplicates Tracking 453595 as yet unmatched pairs. 15934 records in RAM.
INFO 2026-06-08 08:25:54 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr2:138,550,200
INFO 2026-06-08 08:25:54 MarkDuplicates Tracking 452489 as yet unmatched pairs. 14761 records in RAM.
INFO 2026-06-08 08:25:55 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr2:158,663,283
INFO 2026-06-08 08:25:55 MarkDuplicates Tracking 451712 as yet unmatched pairs. 13930 records in RAM.
INFO 2026-06-08 08:25:57 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr2:169,206,628
INFO 2026-06-08 08:25:57 MarkDuplicates Tracking 451489 as yet unmatched pairs. 13680 records in RAM.
INFO 2026-06-08 08:25:59 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr2:174,719,933
INFO 2026-06-08 08:25:59 MarkDuplicates Tracking 450256 as yet unmatched pairs. 12429 records in RAM.
INFO 2026-06-08 08:26:01 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr2:182,775,343
INFO 2026-06-08 08:26:01 MarkDuplicates Tracking 449787 as yet unmatched pairs. 11923 records in RAM.
INFO 2026-06-08 08:26:03 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr2:190,436,138
INFO 2026-06-08 08:26:03 MarkDuplicates Tracking 449162 as yet unmatched pairs. 11278 records in RAM.
INFO 2026-06-08 08:26:05 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr2:200,815,498
INFO 2026-06-08 08:26:05 MarkDuplicates Tracking 448523 as yet unmatched pairs. 10602 records in RAM.
INFO 2026-06-08 08:26:07 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr2:206,005,231
INFO 2026-06-08 08:26:07 MarkDuplicates Tracking 447690 as yet unmatched pairs. 9748 records in RAM.
INFO 2026-06-08 08:26:08 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr2:215,361,507
INFO 2026-06-08 08:26:08 MarkDuplicates Tracking 454089 as yet unmatched pairs. 16094 records in RAM.
INFO 2026-06-08 08:26:11 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 2s. Last read position: chr2:215,375,359
INFO 2026-06-08 08:26:11 MarkDuplicates Tracking 453319 as yet unmatched pairs. 15311 records in RAM.
INFO 2026-06-08 08:26:12 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr2:215,391,753
INFO 2026-06-08 08:26:12 MarkDuplicates Tracking 449734 as yet unmatched pairs. 11710 records in RAM.
INFO 2026-06-08 08:26:14 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr2:215,414,843
INFO 2026-06-08 08:26:14 MarkDuplicates Tracking 448712 as yet unmatched pairs. 10669 records in RAM.
INFO 2026-06-08 08:26:16 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 2s. Last read position: chr2:216,499,950
INFO 2026-06-08 08:26:16 MarkDuplicates Tracking 446362 as yet unmatched pairs. 8294 records in RAM.
INFO 2026-06-08 08:26:18 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr2:218,595,956
INFO 2026-06-08 08:26:18 MarkDuplicates Tracking 443435 as yet unmatched pairs. 5327 records in RAM.
INFO 2026-06-08 08:26:20 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr2:219,570,614
INFO 2026-06-08 08:26:20 MarkDuplicates Tracking 442807 as yet unmatched pairs. 4670 records in RAM.
INFO 2026-06-08 08:26:22 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr2:231,153,599
INFO 2026-06-08 08:26:22 MarkDuplicates Tracking 442357 as yet unmatched pairs. 4157 records in RAM.
INFO 2026-06-08 08:26:24 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 2s. Last read position: chr2:235,041,195
INFO 2026-06-08 08:26:24 MarkDuplicates Tracking 441036 as yet unmatched pairs. 2806 records in RAM.
INFO 2026-06-08 08:26:26 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr2:237,511,013
INFO 2026-06-08 08:26:26 MarkDuplicates Tracking 442043 as yet unmatched pairs. 3769 records in RAM.
INFO 2026-06-08 08:26:28 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr2:240,016,004
INFO 2026-06-08 08:26:28 MarkDuplicates Tracking 440447 as yet unmatched pairs. 2140 records in RAM.
INFO 2026-06-08 08:26:30 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr2:242,149,618
INFO 2026-06-08 08:26:30 MarkDuplicates Tracking 438360 as yet unmatched pairs. 0 records in RAM.
INFO 2026-06-08 08:26:32 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 2s. Last read position: chr3:9,743,194
INFO 2026-06-08 08:26:32 MarkDuplicates Tracking 437687 as yet unmatched pairs. 22497 records in RAM.
INFO 2026-06-08 08:26:34 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr3:12,637,510
INFO 2026-06-08 08:26:34 MarkDuplicates Tracking 436862 as yet unmatched pairs. 21635 records in RAM.
INFO 2026-06-08 08:26:36 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr3:15,738,585
INFO 2026-06-08 08:26:36 MarkDuplicates Tracking 436177 as yet unmatched pairs. 20905 records in RAM.
INFO 2026-06-08 08:26:37 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr3:32,441,973
INFO 2026-06-08 08:26:37 MarkDuplicates Tracking 435547 as yet unmatched pairs. 20211 records in RAM.
INFO 2026-06-08 08:26:40 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 2s. Last read position: chr3:38,479,678
INFO 2026-06-08 08:26:40 MarkDuplicates Tracking 434730 as yet unmatched pairs. 19359 records in RAM.
INFO 2026-06-08 08:26:42 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr3:42,914,393
INFO 2026-06-08 08:26:42 MarkDuplicates Tracking 434016 as yet unmatched pairs. 18618 records in RAM.
INFO 2026-06-08 08:26:44 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr3:47,121,864
INFO 2026-06-08 08:26:44 MarkDuplicates Tracking 433564 as yet unmatched pairs. 18139 records in RAM.
INFO 2026-06-08 08:26:46 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr3:48,419,638
INFO 2026-06-08 08:26:46 MarkDuplicates Tracking 433130 as yet unmatched pairs. 17665 records in RAM.
INFO 2026-06-08 08:26:48 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 2s. Last read position: chr3:49,013,400
INFO 2026-06-08 08:26:48 MarkDuplicates Tracking 432566 as yet unmatched pairs. 17077 records in RAM.
INFO 2026-06-08 08:26:50 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 2s. Last read position: chr3:49,357,702
INFO 2026-06-08 08:26:50 MarkDuplicates Tracking 432668 as yet unmatched pairs. 17160 records in RAM.
INFO 2026-06-08 08:26:52 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 2s. Last read position: chr3:50,115,480
INFO 2026-06-08 08:26:52 MarkDuplicates Tracking 430218 as yet unmatched pairs. 14679 records in RAM.
INFO 2026-06-08 08:26:54 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 2s. Last read position: chr3:51,959,058
INFO 2026-06-08 08:26:54 MarkDuplicates Tracking 429034 as yet unmatched pairs. 13452 records in RAM.
INFO 2026-06-08 08:26:57 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 2s. Last read position: chr3:52,643,252
INFO 2026-06-08 08:26:57 MarkDuplicates Tracking 428119 as yet unmatched pairs. 12501 records in RAM.
INFO 2026-06-08 08:26:59 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr3:57,584,385
INFO 2026-06-08 08:26:59 MarkDuplicates Tracking 427480 as yet unmatched pairs. 11809 records in RAM.
INFO 2026-06-08 08:27:01 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr3:62,262,885
INFO 2026-06-08 08:27:01 MarkDuplicates Tracking 426591 as yet unmatched pairs. 10870 records in RAM.
INFO 2026-06-08 08:27:02 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr3:73,384,577
INFO 2026-06-08 08:27:02 MarkDuplicates Tracking 426045 as yet unmatched pairs. 10278 records in RAM.
INFO 2026-06-08 08:27:04 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr3:105,377,088
INFO 2026-06-08 08:27:04 MarkDuplicates Tracking 426505 as yet unmatched pairs. 10687 records in RAM.
INFO 2026-06-08 08:27:07 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 2s. Last read position: chr3:117,598,823
INFO 2026-06-08 08:27:07 MarkDuplicates Tracking 424609 as yet unmatched pairs. 8755 records in RAM.
INFO 2026-06-08 08:27:09 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr3:122,795,351
INFO 2026-06-08 08:27:09 MarkDuplicates Tracking 424233 as yet unmatched pairs. 8346 records in RAM.
INFO 2026-06-08 08:27:11 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr3:128,067,052
INFO 2026-06-08 08:27:11 MarkDuplicates Tracking 424326 as yet unmatched pairs. 8418 records in RAM.
INFO 2026-06-08 08:27:12 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr3:129,571,166
INFO 2026-06-08 08:27:12 MarkDuplicates Tracking 423352 as yet unmatched pairs. 7401 records in RAM.
INFO 2026-06-08 08:27:15 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 2s. Last read position: chr3:134,177,968
INFO 2026-06-08 08:27:15 MarkDuplicates Tracking 421696 as yet unmatched pairs. 5725 records in RAM.
INFO 2026-06-08 08:27:16 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr3:142,561,316
INFO 2026-06-08 08:27:16 MarkDuplicates Tracking 420938 as yet unmatched pairs. 4903 records in RAM.
INFO 2026-06-08 08:27:18 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr3:153,162,794
INFO 2026-06-08 08:27:18 MarkDuplicates Tracking 420377 as yet unmatched pairs. 4304 records in RAM.
INFO 2026-06-08 08:27:20 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 2s. Last read position: chr3:170,360,463
INFO 2026-06-08 08:27:20 MarkDuplicates Tracking 420111 as yet unmatched pairs. 4005 records in RAM.
INFO 2026-06-08 08:27:23 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 2s. Last read position: chr3:183,790,880
INFO 2026-06-08 08:27:23 MarkDuplicates Tracking 418795 as yet unmatched pairs. 2645 records in RAM.
INFO 2026-06-08 08:27:25 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 2s. Last read position: chr3:184,996,392
INFO 2026-06-08 08:27:25 MarkDuplicates Tracking 418020 as yet unmatched pairs. 1853 records in RAM.
INFO 2026-06-08 08:27:28 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 2s. Last read position: chr3:194,437,169
INFO 2026-06-08 08:27:28 MarkDuplicates Tracking 417574 as yet unmatched pairs. 1362 records in RAM.
INFO 2026-06-08 08:27:30 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 2s. Last read position: chr3:197,634,245
INFO 2026-06-08 08:27:30 MarkDuplicates Tracking 416396 as yet unmatched pairs. 141 records in RAM.
INFO 2026-06-08 08:27:32 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 2s. Last read position: chr4:1,216,143
INFO 2026-06-08 08:27:32 MarkDuplicates Tracking 415966 as yet unmatched pairs. 12905 records in RAM.
INFO 2026-06-08 08:27:34 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr4:2,064,448
INFO 2026-06-08 08:27:34 MarkDuplicates Tracking 415392 as yet unmatched pairs. 12296 records in RAM.
INFO 2026-06-08 08:27:36 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr4:3,512,986
INFO 2026-06-08 08:27:36 MarkDuplicates Tracking 413936 as yet unmatched pairs. 10809 records in RAM.
INFO 2026-06-08 08:27:38 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 2s. Last read position: chr4:13,381,428
INFO 2026-06-08 08:27:38 MarkDuplicates Tracking 412726 as yet unmatched pairs. 9562 records in RAM.
INFO 2026-06-08 08:27:40 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr4:37,508,683
INFO 2026-06-08 08:27:40 MarkDuplicates Tracking 411889 as yet unmatched pairs. 8669 records in RAM.
INFO 2026-06-08 08:27:42 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr4:40,965,801
INFO 2026-06-08 08:27:42 MarkDuplicates Tracking 411969 as yet unmatched pairs. 8708 records in RAM.
INFO 2026-06-08 08:27:44 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr4:56,343,572
INFO 2026-06-08 08:27:44 MarkDuplicates Tracking 410678 as yet unmatched pairs. 7362 records in RAM.
INFO 2026-06-08 08:27:46 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr4:75,655,834
INFO 2026-06-08 08:27:46 MarkDuplicates Tracking 410227 as yet unmatched pairs. 6884 records in RAM.
INFO 2026-06-08 08:27:48 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr4:82,870,371
INFO 2026-06-08 08:27:48 MarkDuplicates Tracking 409687 as yet unmatched pairs. 6323 records in RAM.
INFO 2026-06-08 08:27:49 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr4:89,249,284
INFO 2026-06-08 08:27:49 MarkDuplicates Tracking 408607 as yet unmatched pairs. 5199 records in RAM.
INFO 2026-06-08 08:27:51 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr4:104,471,710
INFO 2026-06-08 08:27:51 MarkDuplicates Tracking 407969 as yet unmatched pairs. 4538 records in RAM.
INFO 2026-06-08 08:27:54 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 2s. Last read position: chr4:118,705,635
INFO 2026-06-08 08:27:54 MarkDuplicates Tracking 407368 as yet unmatched pairs. 3891 records in RAM.
INFO 2026-06-08 08:27:55 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr4:139,058,921
INFO 2026-06-08 08:27:55 MarkDuplicates Tracking 406711 as yet unmatched pairs. 3189 records in RAM.
INFO 2026-06-08 08:27:57 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr4:140,686,368
INFO 2026-06-08 08:27:57 MarkDuplicates Tracking 409866 as yet unmatched pairs. 6297 records in RAM.
INFO 2026-06-08 08:27:59 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 2s. Last read position: chr4:150,900,094
INFO 2026-06-08 08:27:59 MarkDuplicates Tracking 405796 as yet unmatched pairs. 2196 records in RAM.
INFO 2026-06-08 08:28:02 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 2s. Last read position: chr4:163,326,118
INFO 2026-06-08 08:28:02 MarkDuplicates Tracking 407917 as yet unmatched pairs. 4274 records in RAM.
INFO 2026-06-08 08:28:04 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr4:184,728,918
INFO 2026-06-08 08:28:04 MarkDuplicates Tracking 404074 as yet unmatched pairs. 397 records in RAM.
INFO 2026-06-08 08:28:07 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 2s. Last read position: chr5:6,746,397
INFO 2026-06-08 08:28:07 MarkDuplicates Tracking 403307 as yet unmatched pairs. 18673 records in RAM.
INFO 2026-06-08 08:28:09 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 2s. Last read position: chr5:14,397,050
INFO 2026-06-08 08:28:09 MarkDuplicates Tracking 404071 as yet unmatched pairs. 19409 records in RAM.
INFO 2026-06-08 08:28:11 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 2s. Last read position: chr5:32,135,668
INFO 2026-06-08 08:28:11 MarkDuplicates Tracking 401896 as yet unmatched pairs. 17205 records in RAM.
INFO 2026-06-08 08:28:13 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr5:38,352,195
INFO 2026-06-08 08:28:13 MarkDuplicates Tracking 400912 as yet unmatched pairs. 16193 records in RAM.
INFO 2026-06-08 08:28:15 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr5:55,941,053
INFO 2026-06-08 08:28:15 MarkDuplicates Tracking 401321 as yet unmatched pairs. 16560 records in RAM.
INFO 2026-06-08 08:28:17 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr5:65,998,497
INFO 2026-06-08 08:28:17 MarkDuplicates Tracking 400427 as yet unmatched pairs. 15648 records in RAM.
INFO 2026-06-08 08:28:19 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr5:70,545,544
INFO 2026-06-08 08:28:19 MarkDuplicates Tracking 399245 as yet unmatched pairs. 14449 records in RAM.
INFO 2026-06-08 08:28:20 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr5:74,685,458
INFO 2026-06-08 08:28:20 MarkDuplicates Tracking 399200 as yet unmatched pairs. 14378 records in RAM.
INFO 2026-06-08 08:28:22 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr5:82,253,332
INFO 2026-06-08 08:28:22 MarkDuplicates Tracking 398057 as yet unmatched pairs. 13200 records in RAM.
INFO 2026-06-08 08:28:24 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr5:95,731,537
INFO 2026-06-08 08:28:24 MarkDuplicates Tracking 397872 as yet unmatched pairs. 12968 records in RAM.
INFO 2026-06-08 08:28:27 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 2s. Last read position: chr5:112,861,882
INFO 2026-06-08 08:28:27 MarkDuplicates Tracking 396867 as yet unmatched pairs. 11946 records in RAM.
INFO 2026-06-08 08:28:28 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr5:128,112,868
INFO 2026-06-08 08:28:28 MarkDuplicates Tracking 396645 as yet unmatched pairs. 11688 records in RAM.
INFO 2026-06-08 08:28:30 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr5:133,991,047
INFO 2026-06-08 08:28:30 MarkDuplicates Tracking 396088 as yet unmatched pairs. 11106 records in RAM.
INFO 2026-06-08 08:28:32 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr5:138,556,774
INFO 2026-06-08 08:28:32 MarkDuplicates Tracking 394986 as yet unmatched pairs. 9976 records in RAM.
INFO 2026-06-08 08:28:34 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 2s. Last read position: chr5:140,528,923
INFO 2026-06-08 08:28:34 MarkDuplicates Tracking 394634 as yet unmatched pairs. 9528 records in RAM.
INFO 2026-06-08 08:28:36 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 2s. Last read position: chr5:141,864,541
INFO 2026-06-08 08:28:36 MarkDuplicates Tracking 393790 as yet unmatched pairs. 8665 records in RAM.
INFO 2026-06-08 08:28:38 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 2s. Last read position: chr5:150,041,792
INFO 2026-06-08 08:28:38 MarkDuplicates Tracking 392724 as yet unmatched pairs. 7575 records in RAM.
INFO 2026-06-08 08:28:41 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 2s. Last read position: chr5:150,402,178
INFO 2026-06-08 08:28:41 MarkDuplicates Tracking 417170 as yet unmatched pairs. 32003 records in RAM.
INFO 2026-06-08 08:28:43 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 2s. Last read position: chr5:150,405,122
INFO 2026-06-08 08:28:43 MarkDuplicates Tracking 421998 as yet unmatched pairs. 36808 records in RAM.
INFO 2026-06-08 08:28:45 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr5:150,700,957
INFO 2026-06-08 08:28:45 MarkDuplicates Tracking 390011 as yet unmatched pairs. 4802 records in RAM.
INFO 2026-06-08 08:28:47 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr5:157,325,624
INFO 2026-06-08 08:28:47 MarkDuplicates Tracking 389370 as yet unmatched pairs. 4139 records in RAM.
INFO 2026-06-08 08:28:49 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 2s. Last read position: chr5:171,400,197
INFO 2026-06-08 08:28:49 MarkDuplicates Tracking 392808 as yet unmatched pairs. 7552 records in RAM.
INFO 2026-06-08 08:28:51 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr5:176,500,000
INFO 2026-06-08 08:28:51 MarkDuplicates Tracking 388252 as yet unmatched pairs. 2976 records in RAM.
INFO 2026-06-08 08:28:53 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr5:178,206,732
INFO 2026-06-08 08:28:53 MarkDuplicates Tracking 387431 as yet unmatched pairs. 2120 records in RAM.
INFO 2026-06-08 08:28:54 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr5:179,822,957
INFO 2026-06-08 08:28:54 MarkDuplicates Tracking 390691 as yet unmatched pairs. 5366 records in RAM.
INFO 2026-06-08 08:28:56 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr5:181,238,212
INFO 2026-06-08 08:28:56 MarkDuplicates Tracking 387109 as yet unmatched pairs. 1774 records in RAM.
INFO 2026-06-08 08:28:58 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 2s. Last read position: chr6:7,229,513
INFO 2026-06-08 08:28:58 MarkDuplicates Tracking 385796 as yet unmatched pairs. 21594 records in RAM.
INFO 2026-06-08 08:29:00 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 2s. Last read position: chr6:13,600,851
INFO 2026-06-08 08:29:00 MarkDuplicates Tracking 384303 as yet unmatched pairs. 20071 records in RAM.
INFO 2026-06-08 08:29:02 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 2s. Last read position: chr6:21,595,654
INFO 2026-06-08 08:29:02 MarkDuplicates Tracking 383384 as yet unmatched pairs. 19108 records in RAM.
INFO 2026-06-08 08:29:05 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 2s. Last read position: chr6:27,280,291
INFO 2026-06-08 08:29:05 MarkDuplicates Tracking 382404 as yet unmatched pairs. 18110 records in RAM.
INFO 2026-06-08 08:29:07 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr6:30,619,936
INFO 2026-06-08 08:29:07 MarkDuplicates Tracking 382649 as yet unmatched pairs. 18328 records in RAM.
INFO 2026-06-08 08:29:09 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 2s. Last read position: chr6:31,354,244
INFO 2026-06-08 08:29:09 MarkDuplicates Tracking 382879 as yet unmatched pairs. 18532 records in RAM.
INFO 2026-06-08 08:29:11 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 2s. Last read position: chr6:31,687,855
INFO 2026-06-08 08:29:11 MarkDuplicates Tracking 380348 as yet unmatched pairs. 15969 records in RAM.
INFO 2026-06-08 08:29:13 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr6:31,829,274
INFO 2026-06-08 08:29:13 MarkDuplicates Tracking 382245 as yet unmatched pairs. 17853 records in RAM.
INFO 2026-06-08 08:29:15 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr6:31,996,854
INFO 2026-06-08 08:29:15 MarkDuplicates Tracking 380830 as yet unmatched pairs. 16427 records in RAM.
INFO 2026-06-08 08:29:17 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr6:32,116,552
INFO 2026-06-08 08:29:17 MarkDuplicates Tracking 378896 as yet unmatched pairs. 14482 records in RAM.
INFO 2026-06-08 08:29:19 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 2s. Last read position: chr6:33,068,687
INFO 2026-06-08 08:29:19 MarkDuplicates Tracking 379258 as yet unmatched pairs. 14819 records in RAM.
INFO 2026-06-08 08:29:21 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 2s. Last read position: chr6:33,412,526
INFO 2026-06-08 08:29:21 MarkDuplicates Tracking 378348 as yet unmatched pairs. 13897 records in RAM.
INFO 2026-06-08 08:29:23 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 2s. Last read position: chr6:35,017,615
INFO 2026-06-08 08:29:23 MarkDuplicates Tracking 376247 as yet unmatched pairs. 11761 records in RAM.
INFO 2026-06-08 08:29:25 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr6:37,819,956
INFO 2026-06-08 08:29:25 MarkDuplicates Tracking 375915 as yet unmatched pairs. 11386 records in RAM.
INFO 2026-06-08 08:29:28 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 2s. Last read position: chr6:42,963,573
INFO 2026-06-08 08:29:28 MarkDuplicates Tracking 374130 as yet unmatched pairs. 9559 records in RAM.
INFO 2026-06-08 08:29:30 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 2s. Last read position: chr6:43,678,488
INFO 2026-06-08 08:29:30 MarkDuplicates Tracking 373377 as yet unmatched pairs. 8788 records in RAM.
INFO 2026-06-08 08:29:32 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr6:49,459,176
INFO 2026-06-08 08:29:32 MarkDuplicates Tracking 372633 as yet unmatched pairs. 8013 records in RAM.
INFO 2026-06-08 08:29:34 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 2s. Last read position: chr6:56,064,612
INFO 2026-06-08 08:29:34 MarkDuplicates Tracking 371912 as yet unmatched pairs. 7187 records in RAM.
INFO 2026-06-08 08:29:36 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr6:74,122,321
INFO 2026-06-08 08:29:36 MarkDuplicates Tracking 371366 as yet unmatched pairs. 6605 records in RAM.
INFO 2026-06-08 08:29:38 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 2s. Last read position: chr6:87,256,435
INFO 2026-06-08 08:29:38 MarkDuplicates Tracking 371017 as yet unmatched pairs. 6226 records in RAM.
INFO 2026-06-08 08:29:40 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr6:109,376,070
INFO 2026-06-08 08:29:40 MarkDuplicates Tracking 371181 as yet unmatched pairs. 6360 records in RAM.
INFO 2026-06-08 08:29:42 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr6:125,759,472
INFO 2026-06-08 08:29:42 MarkDuplicates Tracking 369298 as yet unmatched pairs. 4433 records in RAM.
INFO 2026-06-08 08:29:44 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 2s. Last read position: chr6:138,298,734
INFO 2026-06-08 08:29:44 MarkDuplicates Tracking 368665 as yet unmatched pairs. 3755 records in RAM.
INFO 2026-06-08 08:29:46 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr6:150,936,926
INFO 2026-06-08 08:29:46 MarkDuplicates Tracking 367898 as yet unmatched pairs. 2965 records in RAM.
INFO 2026-06-08 08:29:48 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr6:151,944,228
INFO 2026-06-08 08:29:48 MarkDuplicates Tracking 371552 as yet unmatched pairs. 6597 records in RAM.
INFO 2026-06-08 08:29:49 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr6:158,503,346
INFO 2026-06-08 08:29:49 MarkDuplicates Tracking 366394 as yet unmatched pairs. 1401 records in RAM.
INFO 2026-06-08 08:29:51 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr6:163,566,694
INFO 2026-06-08 08:29:51 MarkDuplicates Tracking 366737 as yet unmatched pairs. 1734 records in RAM.
INFO 2026-06-08 08:29:54 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 2s. Last read position: chr7:1,471,209
INFO 2026-06-08 08:29:54 MarkDuplicates Tracking 365255 as yet unmatched pairs. 27003 records in RAM.
INFO 2026-06-08 08:29:56 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 2s. Last read position: chr7:4,759,196
INFO 2026-06-08 08:29:56 MarkDuplicates Tracking 363634 as yet unmatched pairs. 25360 records in RAM.
INFO 2026-06-08 08:29:58 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 2s. Last read position: chr7:5,527,606
INFO 2026-06-08 08:29:58 MarkDuplicates Tracking 363467 as yet unmatched pairs. 25162 records in RAM.
INFO 2026-06-08 08:30:00 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 2s. Last read position: chr7:6,599,828
INFO 2026-06-08 08:30:00 MarkDuplicates Tracking 361780 as yet unmatched pairs. 23463 records in RAM.
INFO 2026-06-08 08:30:02 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 1s. Last read position: chr7:23,117,915
INFO 2026-06-08 08:30:02 MarkDuplicates Tracking 361053 as yet unmatched pairs. 22697 records in RAM.
INFO 2026-06-08 08:30:04 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 1s. Last read position: chr7:30,594,911
INFO 2026-06-08 08:30:04 MarkDuplicates Tracking 360458 as yet unmatched pairs. 22079 records in RAM.
INFO 2026-06-08 08:30:06 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 2s. Last read position: chr7:41,690,349
INFO 2026-06-08 08:30:06 MarkDuplicates Tracking 359377 as yet unmatched pairs. 20954 records in RAM.
INFO 2026-06-08 08:30:08 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 1s. Last read position: chr7:44,111,951
INFO 2026-06-08 08:30:08 MarkDuplicates Tracking 358867 as yet unmatched pairs. 20418 records in RAM.
INFO 2026-06-08 08:30:10 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 2s. Last read position: chr7:47,283,647
INFO 2026-06-08 08:30:10 MarkDuplicates Tracking 358468 as yet unmatched pairs. 19981 records in RAM.
INFO 2026-06-08 08:30:12 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 1s. Last read position: chr7:56,079,740
INFO 2026-06-08 08:30:12 MarkDuplicates Tracking 358586 as yet unmatched pairs. 20049 records in RAM.
INFO 2026-06-08 08:30:14 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:07:29s. Time for last 1,000,000: 1s. Last read position: chr7:72,829,607
INFO 2026-06-08 08:30:14 MarkDuplicates Tracking 356343 as yet unmatched pairs. 17778 records in RAM.
INFO 2026-06-08 08:30:15 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 1s. Last read position: chr7:73,498,544
INFO 2026-06-08 08:30:15 MarkDuplicates Tracking 356291 as yet unmatched pairs. 17719 records in RAM.
INFO 2026-06-08 08:30:18 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 2s. Last read position: chr7:74,912,149
INFO 2026-06-08 08:30:18 MarkDuplicates Tracking 355165 as yet unmatched pairs. 16566 records in RAM.
INFO 2026-06-08 08:30:20 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 2s. Last read position: chr7:75,888,214
INFO 2026-06-08 08:30:20 MarkDuplicates Tracking 355575 as yet unmatched pairs. 16954 records in RAM.
INFO 2026-06-08 08:30:22 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:07:37s. Time for last 1,000,000: 1s. Last read position: chr7:76,329,952
INFO 2026-06-08 08:30:22 MarkDuplicates Tracking 354176 as yet unmatched pairs. 15538 records in RAM.
INFO 2026-06-08 08:30:23 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 1s. Last read position: chr7:80,837,809
INFO 2026-06-08 08:30:23 MarkDuplicates Tracking 354325 as yet unmatched pairs. 15653 records in RAM.
INFO 2026-06-08 08:30:25 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:07:40s. Time for last 1,000,000: 1s. Last read position: chr7:92,079,906
INFO 2026-06-08 08:30:25 MarkDuplicates Tracking 353327 as yet unmatched pairs. 14635 records in RAM.
INFO 2026-06-08 08:30:27 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 1s. Last read position: chr7:94,425,809
INFO 2026-06-08 08:30:27 MarkDuplicates Tracking 352755 as yet unmatched pairs. 14051 records in RAM.
INFO 2026-06-08 08:30:29 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 1s. Last read position: chr7:99,373,910
INFO 2026-06-08 08:30:29 MarkDuplicates Tracking 351160 as yet unmatched pairs. 12427 records in RAM.
INFO 2026-06-08 08:30:31 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 1s. Last read position: chr7:100,095,878
INFO 2026-06-08 08:30:31 MarkDuplicates Tracking 350880 as yet unmatched pairs. 12130 records in RAM.
INFO 2026-06-08 08:30:33 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:07:47s. Time for last 1,000,000: 1s. Last read position: chr7:100,614,991
INFO 2026-06-08 08:30:33 MarkDuplicates Tracking 349779 as yet unmatched pairs. 11018 records in RAM.
INFO 2026-06-08 08:30:34 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 1s. Last read position: chr7:102,103,701
INFO 2026-06-08 08:30:34 MarkDuplicates Tracking 348642 as yet unmatched pairs. 9835 records in RAM.
INFO 2026-06-08 08:30:36 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 1s. Last read position: chr7:102,553,440
INFO 2026-06-08 08:30:36 MarkDuplicates Tracking 349595 as yet unmatched pairs. 10777 records in RAM.
INFO 2026-06-08 08:30:37 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 1s. Last read position: chr7:102,659,647
INFO 2026-06-08 08:30:37 MarkDuplicates Tracking 349289 as yet unmatched pairs. 10462 records in RAM.
INFO 2026-06-08 08:30:39 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 1s. Last read position: chr7:106,253,119
INFO 2026-06-08 08:30:39 MarkDuplicates Tracking 347609 as yet unmatched pairs. 8744 records in RAM.
INFO 2026-06-08 08:30:41 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:56s. Time for last 1,000,000: 1s. Last read position: chr7:114,979,569
INFO 2026-06-08 08:30:41 MarkDuplicates Tracking 346811 as yet unmatched pairs. 7893 records in RAM.
INFO 2026-06-08 08:30:43 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 1s. Last read position: chr7:127,844,341
INFO 2026-06-08 08:30:43 MarkDuplicates Tracking 350017 as yet unmatched pairs. 11065 records in RAM.
INFO 2026-06-08 08:30:45 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 2s. Last read position: chr7:130,026,241
INFO 2026-06-08 08:30:45 MarkDuplicates Tracking 345377 as yet unmatched pairs. 6407 records in RAM.
INFO 2026-06-08 08:30:47 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 1s. Last read position: chr7:137,908,315
INFO 2026-06-08 08:30:47 MarkDuplicates Tracking 345770 as yet unmatched pairs. 6769 records in RAM.
INFO 2026-06-08 08:30:48 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 1s. Last read position: chr7:139,283,516
INFO 2026-06-08 08:30:48 MarkDuplicates Tracking 343959 as yet unmatched pairs. 4937 records in RAM.
INFO 2026-06-08 08:30:50 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 1s. Last read position: chr7:142,941,180
INFO 2026-06-08 08:30:50 MarkDuplicates Tracking 342977 as yet unmatched pairs. 3924 records in RAM.
INFO 2026-06-08 08:30:52 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 1s. Last read position: chr7:144,365,342
INFO 2026-06-08 08:30:52 MarkDuplicates Tracking 342447 as yet unmatched pairs. 3383 records in RAM.
INFO 2026-06-08 08:30:53 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 1s. Last read position: chr7:150,372,626
INFO 2026-06-08 08:30:53 MarkDuplicates Tracking 342765 as yet unmatched pairs. 3672 records in RAM.
INFO 2026-06-08 08:30:55 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:08:10s. Time for last 1,000,000: 1s. Last read position: chr7:152,117,360
INFO 2026-06-08 08:30:55 MarkDuplicates Tracking 340374 as yet unmatched pairs. 1248 records in RAM.
INFO 2026-06-08 08:30:57 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:08:12s. Time for last 1,000,000: 1s. Last read position: chr7:157,182,109
INFO 2026-06-08 08:30:57 MarkDuplicates Tracking 339745 as yet unmatched pairs. 601 records in RAM.
INFO 2026-06-08 08:30:59 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 1s. Last read position: chr8:11,845,210
INFO 2026-06-08 08:30:59 MarkDuplicates Tracking 341807 as yet unmatched pairs. 27734 records in RAM.
INFO 2026-06-08 08:31:00 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 1s. Last read position: chr8:18,714,777
INFO 2026-06-08 08:31:00 MarkDuplicates Tracking 338095 as yet unmatched pairs. 23999 records in RAM.
INFO 2026-06-08 08:31:02 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:08:17s. Time for last 1,000,000: 2s. Last read position: chr8:25,507,068
INFO 2026-06-08 08:31:02 MarkDuplicates Tracking 337275 as yet unmatched pairs. 23166 records in RAM.
INFO 2026-06-08 08:31:05 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 2s. Last read position: chr8:37,696,120
INFO 2026-06-08 08:31:05 MarkDuplicates Tracking 343945 as yet unmatched pairs. 29813 records in RAM.
INFO 2026-06-08 08:31:06 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:08:21s. Time for last 1,000,000: 1s. Last read position: chr8:37,877,225
INFO 2026-06-08 08:31:06 MarkDuplicates Tracking 335807 as yet unmatched pairs. 21661 records in RAM.
INFO 2026-06-08 08:32:13 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 66s. Last read position: chr8:39,090,048
INFO 2026-06-08 08:32:13 MarkDuplicates Tracking 335008 as yet unmatched pairs. 20858 records in RAM.
INFO 2026-06-08 08:32:16 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 2s. Last read position: chr8:47,778,759
INFO 2026-06-08 08:32:16 MarkDuplicates Tracking 334525 as yet unmatched pairs. 20325 records in RAM.
INFO 2026-06-08 08:32:18 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr8:53,967,814
INFO 2026-06-08 08:32:18 MarkDuplicates Tracking 333054 as yet unmatched pairs. 18833 records in RAM.
INFO 2026-06-08 08:32:19 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr8:66,447,297
INFO 2026-06-08 08:32:19 MarkDuplicates Tracking 332472 as yet unmatched pairs. 18216 records in RAM.
INFO 2026-06-08 08:32:21 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr8:70,128,740
INFO 2026-06-08 08:32:21 MarkDuplicates Tracking 333328 as yet unmatched pairs. 19051 records in RAM.
INFO 2026-06-08 08:32:23 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr8:74,691,613
INFO 2026-06-08 08:32:23 MarkDuplicates Tracking 331105 as yet unmatched pairs. 16800 records in RAM.
INFO 2026-06-08 08:32:25 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr8:81,713,933
INFO 2026-06-08 08:32:25 MarkDuplicates Tracking 330956 as yet unmatched pairs. 16606 records in RAM.
INFO 2026-06-08 08:32:26 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr8:94,511,560
INFO 2026-06-08 08:32:26 MarkDuplicates Tracking 330302 as yet unmatched pairs. 15934 records in RAM.
INFO 2026-06-08 08:32:28 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr8:99,009,242
INFO 2026-06-08 08:32:28 MarkDuplicates Tracking 329055 as yet unmatched pairs. 14665 records in RAM.
INFO 2026-06-08 08:32:30 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr8:100,712,696
INFO 2026-06-08 08:32:30 MarkDuplicates Tracking 329960 as yet unmatched pairs. 15556 records in RAM.
INFO 2026-06-08 08:32:32 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr8:102,651,820
INFO 2026-06-08 08:32:32 MarkDuplicates Tracking 328406 as yet unmatched pairs. 13982 records in RAM.
INFO 2026-06-08 08:32:33 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr8:115,439,155
INFO 2026-06-08 08:32:33 MarkDuplicates Tracking 329661 as yet unmatched pairs. 15204 records in RAM.
INFO 2026-06-08 08:32:35 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 2s. Last read position: chr8:115,619,588
INFO 2026-06-08 08:32:35 MarkDuplicates Tracking 331491 as yet unmatched pairs. 16985 records in RAM.
INFO 2026-06-08 08:32:37 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr8:122,953,452
INFO 2026-06-08 08:32:37 MarkDuplicates Tracking 326486 as yet unmatched pairs. 11944 records in RAM.
INFO 2026-06-08 08:32:39 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr8:125,056,877
INFO 2026-06-08 08:32:39 MarkDuplicates Tracking 326024 as yet unmatched pairs. 11428 records in RAM.
INFO 2026-06-08 08:32:42 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 2s. Last read position: chr8:132,811,149
INFO 2026-06-08 08:32:42 MarkDuplicates Tracking 324785 as yet unmatched pairs. 10143 records in RAM.
INFO 2026-06-08 08:32:44 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 2s. Last read position: chr8:141,422,132
INFO 2026-06-08 08:32:44 MarkDuplicates Tracking 324148 as yet unmatched pairs. 9455 records in RAM.
INFO 2026-06-08 08:32:45 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr8:143,589,737
INFO 2026-06-08 08:32:45 MarkDuplicates Tracking 323527 as yet unmatched pairs. 8782 records in RAM.
INFO 2026-06-08 08:32:47 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr8:143,818,505
INFO 2026-06-08 08:32:47 MarkDuplicates Tracking 322359 as yet unmatched pairs. 7580 records in RAM.
INFO 2026-06-08 08:32:48 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,990
INFO 2026-06-08 08:32:48 MarkDuplicates Tracking 322169 as yet unmatched pairs. 7390 records in RAM.
INFO 2026-06-08 08:32:50 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr8:143,917,776
INFO 2026-06-08 08:32:50 MarkDuplicates Tracking 322177 as yet unmatched pairs. 7383 records in RAM.
INFO 2026-06-08 08:32:51 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr8:143,984,214
INFO 2026-06-08 08:32:51 MarkDuplicates Tracking 320093 as yet unmatched pairs. 5275 records in RAM.
INFO 2026-06-08 08:32:53 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr8:144,263,047
INFO 2026-06-08 08:32:53 MarkDuplicates Tracking 318671 as yet unmatched pairs. 3839 records in RAM.
INFO 2026-06-08 08:32:55 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr8:144,467,204
INFO 2026-06-08 08:32:55 MarkDuplicates Tracking 319908 as yet unmatched pairs. 5054 records in RAM.
INFO 2026-06-08 08:32:57 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr8:144,774,014
INFO 2026-06-08 08:32:57 MarkDuplicates Tracking 315297 as yet unmatched pairs. 423 records in RAM.
INFO 2026-06-08 08:32:58 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr9:5,772,726
INFO 2026-06-08 08:32:58 MarkDuplicates Tracking 314588 as yet unmatched pairs. 17716 records in RAM.
INFO 2026-06-08 08:33:00 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr9:15,465,499
INFO 2026-06-08 08:33:00 MarkDuplicates Tracking 313729 as yet unmatched pairs. 16819 records in RAM.
INFO 2026-06-08 08:33:02 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr9:33,278,203
INFO 2026-06-08 08:33:02 MarkDuplicates Tracking 313197 as yet unmatched pairs. 16258 records in RAM.
INFO 2026-06-08 08:33:03 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr9:35,609,330
INFO 2026-06-08 08:33:03 MarkDuplicates Tracking 312524 as yet unmatched pairs. 15569 records in RAM.
INFO 2026-06-08 08:33:05 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr9:38,577,087
INFO 2026-06-08 08:33:05 MarkDuplicates Tracking 311275 as yet unmatched pairs. 14278 records in RAM.
INFO 2026-06-08 08:33:07 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 2s. Last read position: chr9:76,503,107
INFO 2026-06-08 08:33:07 MarkDuplicates Tracking 310829 as yet unmatched pairs. 13808 records in RAM.
INFO 2026-06-08 08:33:09 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr9:88,393,274
INFO 2026-06-08 08:33:09 MarkDuplicates Tracking 310118 as yet unmatched pairs. 13067 records in RAM.
INFO 2026-06-08 08:33:11 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr9:93,335,569
INFO 2026-06-08 08:33:11 MarkDuplicates Tracking 309412 as yet unmatched pairs. 12310 records in RAM.
INFO 2026-06-08 08:33:13 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 2s. Last read position: chr9:99,035,381
INFO 2026-06-08 08:33:13 MarkDuplicates Tracking 308538 as yet unmatched pairs. 11412 records in RAM.
INFO 2026-06-08 08:33:15 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr9:110,244,102
INFO 2026-06-08 08:33:15 MarkDuplicates Tracking 308102 as yet unmatched pairs. 10964 records in RAM.
INFO 2026-06-08 08:33:17 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr9:113,937,183
INFO 2026-06-08 08:33:17 MarkDuplicates Tracking 306949 as yet unmatched pairs. 9764 records in RAM.
INFO 2026-06-08 08:33:18 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr9:121,192,171
INFO 2026-06-08 08:33:18 MarkDuplicates Tracking 306139 as yet unmatched pairs. 8925 records in RAM.
INFO 2026-06-08 08:33:20 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr9:125,238,609
INFO 2026-06-08 08:33:20 MarkDuplicates Tracking 305564 as yet unmatched pairs. 8333 records in RAM.
INFO 2026-06-08 08:33:22 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr9:127,936,599
INFO 2026-06-08 08:33:22 MarkDuplicates Tracking 304564 as yet unmatched pairs. 7293 records in RAM.
INFO 2026-06-08 08:33:24 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr9:128,636,289
INFO 2026-06-08 08:33:24 MarkDuplicates Tracking 303889 as yet unmatched pairs. 6596 records in RAM.
INFO 2026-06-08 08:33:25 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr9:130,636,004
INFO 2026-06-08 08:33:25 MarkDuplicates Tracking 302885 as yet unmatched pairs. 5570 records in RAM.
INFO 2026-06-08 08:33:27 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr9:131,939,410
INFO 2026-06-08 08:33:27 MarkDuplicates Tracking 302009 as yet unmatched pairs. 4685 records in RAM.
INFO 2026-06-08 08:33:29 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr9:134,429,898
INFO 2026-06-08 08:33:29 MarkDuplicates Tracking 301292 as yet unmatched pairs. 3937 records in RAM.
INFO 2026-06-08 08:33:30 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr9:136,476,572
INFO 2026-06-08 08:33:30 MarkDuplicates Tracking 300789 as yet unmatched pairs. 3427 records in RAM.
INFO 2026-06-08 08:33:32 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr9:137,101,044
INFO 2026-06-08 08:33:32 MarkDuplicates Tracking 299146 as yet unmatched pairs. 1762 records in RAM.
INFO 2026-06-08 08:33:34 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr9:137,613,843
INFO 2026-06-08 08:33:34 MarkDuplicates Tracking 297914 as yet unmatched pairs. 511 records in RAM.
INFO 2026-06-08 08:33:36 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr10:5,740,258
INFO 2026-06-08 08:33:36 MarkDuplicates Tracking 297136 as yet unmatched pairs. 16887 records in RAM.
INFO 2026-06-08 08:33:37 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr10:8,891,117
INFO 2026-06-08 08:33:37 MarkDuplicates Tracking 296049 as yet unmatched pairs. 15773 records in RAM.
INFO 2026-06-08 08:33:39 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr10:21,516,335
INFO 2026-06-08 08:33:39 MarkDuplicates Tracking 295433 as yet unmatched pairs. 15127 records in RAM.
INFO 2026-06-08 08:33:41 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr10:28,535,617
INFO 2026-06-08 08:33:41 MarkDuplicates Tracking 295654 as yet unmatched pairs. 15320 records in RAM.
INFO 2026-06-08 08:33:43 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 2s. Last read position: chr10:32,287,115
INFO 2026-06-08 08:33:43 MarkDuplicates Tracking 294573 as yet unmatched pairs. 14217 records in RAM.
INFO 2026-06-08 08:33:45 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 2s. Last read position: chr10:43,104,884
INFO 2026-06-08 08:33:45 MarkDuplicates Tracking 295311 as yet unmatched pairs. 14924 records in RAM.
INFO 2026-06-08 08:33:47 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 2s. Last read position: chr10:44,991,937
INFO 2026-06-08 08:33:47 MarkDuplicates Tracking 292726 as yet unmatched pairs. 12298 records in RAM.
INFO 2026-06-08 08:33:49 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr10:47,502,081
INFO 2026-06-08 08:33:49 MarkDuplicates Tracking 292269 as yet unmatched pairs. 11837 records in RAM.
INFO 2026-06-08 08:33:51 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr10:59,906,131
INFO 2026-06-08 08:33:51 MarkDuplicates Tracking 293631 as yet unmatched pairs. 13165 records in RAM.
INFO 2026-06-08 08:33:52 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr10:69,364,869
INFO 2026-06-08 08:33:52 MarkDuplicates Tracking 291008 as yet unmatched pairs. 10514 records in RAM.
INFO 2026-06-08 08:33:54 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr10:73,387,737
INFO 2026-06-08 08:33:54 MarkDuplicates Tracking 290705 as yet unmatched pairs. 10182 records in RAM.
INFO 2026-06-08 08:33:56 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr10:75,519,275
INFO 2026-06-08 08:33:56 MarkDuplicates Tracking 289155 as yet unmatched pairs. 8616 records in RAM.
INFO 2026-06-08 08:33:57 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr10:79,306,163
INFO 2026-06-08 08:33:57 MarkDuplicates Tracking 288888 as yet unmatched pairs. 8332 records in RAM.
INFO 2026-06-08 08:33:59 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr10:87,358,357
INFO 2026-06-08 08:33:59 MarkDuplicates Tracking 287901 as yet unmatched pairs. 7305 records in RAM.
INFO 2026-06-08 08:34:01 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr10:93,323,078
INFO 2026-06-08 08:34:01 MarkDuplicates Tracking 288004 as yet unmatched pairs. 7384 records in RAM.
INFO 2026-06-08 08:34:03 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr10:96,984,874
INFO 2026-06-08 08:34:03 MarkDuplicates Tracking 286417 as yet unmatched pairs. 5761 records in RAM.
INFO 2026-06-08 08:34:04 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr10:100,988,894
INFO 2026-06-08 08:34:04 MarkDuplicates Tracking 285716 as yet unmatched pairs. 5055 records in RAM.
INFO 2026-06-08 08:34:06 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr10:102,422,070
INFO 2026-06-08 08:34:06 MarkDuplicates Tracking 285153 as yet unmatched pairs. 4461 records in RAM.
INFO 2026-06-08 08:34:08 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 2s. Last read position: chr10:110,279,963
INFO 2026-06-08 08:34:08 MarkDuplicates Tracking 284044 as yet unmatched pairs. 3323 records in RAM.
INFO 2026-06-08 08:34:10 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr10:116,944,979
INFO 2026-06-08 08:34:10 MarkDuplicates Tracking 285002 as yet unmatched pairs. 4265 records in RAM.
INFO 2026-06-08 08:34:12 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr10:122,084,185
INFO 2026-06-08 08:34:12 MarkDuplicates Tracking 282579 as yet unmatched pairs. 1839 records in RAM.
INFO 2026-06-08 08:34:14 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr10:127,008,759
INFO 2026-06-08 08:34:14 MarkDuplicates Tracking 282071 as yet unmatched pairs. 1309 records in RAM.
INFO 2026-06-08 08:34:16 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 2s. Last read position: chr11:209,463
INFO 2026-06-08 08:34:16 MarkDuplicates Tracking 281630 as yet unmatched pairs. 38293 records in RAM.
INFO 2026-06-08 08:34:18 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr11:294,358
INFO 2026-06-08 08:34:18 MarkDuplicates Tracking 287379 as yet unmatched pairs. 44029 records in RAM.
INFO 2026-06-08 08:34:20 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr11:407,087
INFO 2026-06-08 08:34:20 MarkDuplicates Tracking 278761 as yet unmatched pairs. 35388 records in RAM.
INFO 2026-06-08 08:34:22 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr11:799,407
INFO 2026-06-08 08:34:22 MarkDuplicates Tracking 278030 as yet unmatched pairs. 34642 records in RAM.
INFO 2026-06-08 08:34:23 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr11:1,761,383
INFO 2026-06-08 08:34:23 MarkDuplicates Tracking 279635 as yet unmatched pairs. 36227 records in RAM.
INFO 2026-06-08 08:34:25 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr11:5,545,249
INFO 2026-06-08 08:34:25 MarkDuplicates Tracking 275574 as yet unmatched pairs. 32145 records in RAM.
INFO 2026-06-08 08:34:27 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr11:6,622,743
INFO 2026-06-08 08:34:27 MarkDuplicates Tracking 274985 as yet unmatched pairs. 31541 records in RAM.
INFO 2026-06-08 08:34:29 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr11:9,423,809
INFO 2026-06-08 08:34:29 MarkDuplicates Tracking 274325 as yet unmatched pairs. 30862 records in RAM.
INFO 2026-06-08 08:34:31 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr11:13,413,537
INFO 2026-06-08 08:34:31 MarkDuplicates Tracking 273265 as yet unmatched pairs. 29767 records in RAM.
INFO 2026-06-08 08:34:32 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr11:18,403,756
INFO 2026-06-08 08:34:32 MarkDuplicates Tracking 274568 as yet unmatched pairs. 31042 records in RAM.
INFO 2026-06-08 08:34:34 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr11:33,751,539
INFO 2026-06-08 08:34:34 MarkDuplicates Tracking 272143 as yet unmatched pairs. 28591 records in RAM.
INFO 2026-06-08 08:34:36 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 2s. Last read position: chr11:43,490,244
INFO 2026-06-08 08:34:36 MarkDuplicates Tracking 271348 as yet unmatched pairs. 27790 records in RAM.
INFO 2026-06-08 08:34:39 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 2s. Last read position: chr11:47,175,252
INFO 2026-06-08 08:34:39 MarkDuplicates Tracking 270602 as yet unmatched pairs. 27029 records in RAM.
INFO 2026-06-08 08:34:41 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr11:57,313,430
INFO 2026-06-08 08:34:41 MarkDuplicates Tracking 270030 as yet unmatched pairs. 26441 records in RAM.
INFO 2026-06-08 08:34:42 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr11:58,579,526
INFO 2026-06-08 08:34:42 MarkDuplicates Tracking 269050 as yet unmatched pairs. 25453 records in RAM.
INFO 2026-06-08 08:34:44 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr11:60,935,800
INFO 2026-06-08 08:34:44 MarkDuplicates Tracking 268477 as yet unmatched pairs. 24872 records in RAM.
INFO 2026-06-08 08:34:46 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr11:61,795,793
INFO 2026-06-08 08:34:46 MarkDuplicates Tracking 267110 as yet unmatched pairs. 23458 records in RAM.
INFO 2026-06-08 08:34:47 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr11:62,522,519
INFO 2026-06-08 08:34:47 MarkDuplicates Tracking 267207 as yet unmatched pairs. 23515 records in RAM.
INFO 2026-06-08 08:34:49 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr11:62,535,944
INFO 2026-06-08 08:34:49 MarkDuplicates Tracking 266319 as yet unmatched pairs. 22617 records in RAM.
INFO 2026-06-08 08:34:51 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr11:63,889,301
INFO 2026-06-08 08:34:51 MarkDuplicates Tracking 265396 as yet unmatched pairs. 21674 records in RAM.
INFO 2026-06-08 08:34:52 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr11:65,044,544
INFO 2026-06-08 08:34:52 MarkDuplicates Tracking 264029 as yet unmatched pairs. 20298 records in RAM.
INFO 2026-06-08 08:34:54 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr11:65,505,231
INFO 2026-06-08 08:34:54 MarkDuplicates Tracking 264354 as yet unmatched pairs. 20596 records in RAM.
INFO 2026-06-08 08:34:56 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr11:65,890,764
INFO 2026-06-08 08:34:56 MarkDuplicates Tracking 262133 as yet unmatched pairs. 18365 records in RAM.
INFO 2026-06-08 08:34:57 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr11:66,565,842
INFO 2026-06-08 08:34:57 MarkDuplicates Tracking 262057 as yet unmatched pairs. 18278 records in RAM.
INFO 2026-06-08 08:34:59 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr11:66,707,640
INFO 2026-06-08 08:34:59 MarkDuplicates Tracking 260733 as yet unmatched pairs. 16940 records in RAM.
INFO 2026-06-08 08:35:02 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 2s. Last read position: chr11:67,279,896
INFO 2026-06-08 08:35:02 MarkDuplicates Tracking 259893 as yet unmatched pairs. 16059 records in RAM.
INFO 2026-06-08 08:35:04 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr11:67,398,848
INFO 2026-06-08 08:35:04 MarkDuplicates Tracking 259885 as yet unmatched pairs. 16029 records in RAM.
INFO 2026-06-08 08:35:05 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr11:68,312,714
INFO 2026-06-08 08:35:05 MarkDuplicates Tracking 258186 as yet unmatched pairs. 14306 records in RAM.
INFO 2026-06-08 08:35:07 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr11:68,807,468
INFO 2026-06-08 08:35:07 MarkDuplicates Tracking 256958 as yet unmatched pairs. 13062 records in RAM.
INFO 2026-06-08 08:35:09 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr11:69,643,912
INFO 2026-06-08 08:35:09 MarkDuplicates Tracking 274446 as yet unmatched pairs. 30531 records in RAM.
INFO 2026-06-08 08:35:10 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr11:70,124,298
INFO 2026-06-08 08:35:10 MarkDuplicates Tracking 257641 as yet unmatched pairs. 13707 records in RAM.
INFO 2026-06-08 08:35:12 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr11:71,435,629
INFO 2026-06-08 08:35:12 MarkDuplicates Tracking 253965 as yet unmatched pairs. 10024 records in RAM.
INFO 2026-06-08 08:35:13 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr11:72,014,830
INFO 2026-06-08 08:35:13 MarkDuplicates Tracking 254197 as yet unmatched pairs. 10247 records in RAM.
INFO 2026-06-08 08:35:15 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr11:72,726,684
INFO 2026-06-08 08:35:15 MarkDuplicates Tracking 252831 as yet unmatched pairs. 8865 records in RAM.
INFO 2026-06-08 08:35:17 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr11:73,367,661
INFO 2026-06-08 08:35:17 MarkDuplicates Tracking 251624 as yet unmatched pairs. 7624 records in RAM.
INFO 2026-06-08 08:35:18 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr11:75,284,237
INFO 2026-06-08 08:35:18 MarkDuplicates Tracking 253346 as yet unmatched pairs. 9319 records in RAM.
INFO 2026-06-08 08:35:20 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr11:82,853,219
INFO 2026-06-08 08:35:20 MarkDuplicates Tracking 249766 as yet unmatched pairs. 5711 records in RAM.
INFO 2026-06-08 08:35:22 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr11:101,039,081
INFO 2026-06-08 08:35:22 MarkDuplicates Tracking 249556 as yet unmatched pairs. 5478 records in RAM.
INFO 2026-06-08 08:35:23 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr11:107,553,166
INFO 2026-06-08 08:35:23 MarkDuplicates Tracking 247549 as yet unmatched pairs. 3456 records in RAM.
INFO 2026-06-08 08:35:25 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr11:117,409,865
INFO 2026-06-08 08:35:25 MarkDuplicates Tracking 246809 as yet unmatched pairs. 2697 records in RAM.
INFO 2026-06-08 08:35:27 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr11:119,055,300
INFO 2026-06-08 08:35:27 MarkDuplicates Tracking 246357 as yet unmatched pairs. 2232 records in RAM.
INFO 2026-06-08 08:35:29 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 2s. Last read position: chr11:124,887,133
INFO 2026-06-08 08:35:29 MarkDuplicates Tracking 245287 as yet unmatched pairs. 1152 records in RAM.
INFO 2026-06-08 08:35:31 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr11:130,234,029
INFO 2026-06-08 08:35:31 MarkDuplicates Tracking 244753 as yet unmatched pairs. 599 records in RAM.
INFO 2026-06-08 08:35:34 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 2s. Last read position: chr12:1,079,542
INFO 2026-06-08 08:35:34 MarkDuplicates Tracking 243890 as yet unmatched pairs. 23399 records in RAM.
INFO 2026-06-08 08:35:35 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr12:6,225,479
INFO 2026-06-08 08:35:35 MarkDuplicates Tracking 244129 as yet unmatched pairs. 23615 records in RAM.
INFO 2026-06-08 08:35:37 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr12:6,770,786
INFO 2026-06-08 08:35:37 MarkDuplicates Tracking 242275 as yet unmatched pairs. 21745 records in RAM.
INFO 2026-06-08 08:35:39 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr12:7,936,072
INFO 2026-06-08 08:35:39 MarkDuplicates Tracking 241367 as yet unmatched pairs. 20834 records in RAM.
INFO 2026-06-08 08:35:40 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr12:12,338,469
INFO 2026-06-08 08:35:40 MarkDuplicates Tracking 240788 as yet unmatched pairs. 20227 records in RAM.
INFO 2026-06-08 08:35:42 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr12:14,793,755
INFO 2026-06-08 08:35:42 MarkDuplicates Tracking 240298 as yet unmatched pairs. 19719 records in RAM.
INFO 2026-06-08 08:35:44 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr12:26,681,962
INFO 2026-06-08 08:35:44 MarkDuplicates Tracking 239688 as yet unmatched pairs. 19102 records in RAM.
INFO 2026-06-08 08:35:46 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr12:42,097,950
INFO 2026-06-08 08:35:46 MarkDuplicates Tracking 238754 as yet unmatched pairs. 18155 records in RAM.
INFO 2026-06-08 08:35:47 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr12:47,817,892
INFO 2026-06-08 08:35:47 MarkDuplicates Tracking 238062 as yet unmatched pairs. 17431 records in RAM.
INFO 2026-06-08 08:35:49 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr12:49,051,647
INFO 2026-06-08 08:35:49 MarkDuplicates Tracking 237401 as yet unmatched pairs. 16740 records in RAM.
INFO 2026-06-08 08:35:51 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr12:50,181,924
INFO 2026-06-08 08:35:51 MarkDuplicates Tracking 237717 as yet unmatched pairs. 17053 records in RAM.
INFO 2026-06-08 08:35:52 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr12:52,901,939
INFO 2026-06-08 08:35:52 MarkDuplicates Tracking 236175 as yet unmatched pairs. 15493 records in RAM.
INFO 2026-06-08 08:35:54 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr12:53,315,317
INFO 2026-06-08 08:35:54 MarkDuplicates Tracking 235180 as yet unmatched pairs. 14484 records in RAM.
INFO 2026-06-08 08:35:56 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr12:54,283,904
INFO 2026-06-08 08:35:56 MarkDuplicates Tracking 234771 as yet unmatched pairs. 14052 records in RAM.
INFO 2026-06-08 08:35:59 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 2s. Last read position: chr12:56,112,857
INFO 2026-06-08 08:35:59 MarkDuplicates Tracking 233493 as yet unmatched pairs. 12757 records in RAM.
INFO 2026-06-08 08:36:01 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 2s. Last read position: chr12:56,609,819
INFO 2026-06-08 08:36:01 MarkDuplicates Tracking 232939 as yet unmatched pairs. 12197 records in RAM.
INFO 2026-06-08 08:36:03 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr12:57,158,608
INFO 2026-06-08 08:36:03 MarkDuplicates Tracking 232285 as yet unmatched pairs. 11517 records in RAM.
INFO 2026-06-08 08:36:04 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr12:57,600,837
INFO 2026-06-08 08:36:04 MarkDuplicates Tracking 231173 as yet unmatched pairs. 10385 records in RAM.
INFO 2026-06-08 08:36:06 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr12:65,245,676
INFO 2026-06-08 08:36:06 MarkDuplicates Tracking 230502 as yet unmatched pairs. 9697 records in RAM.
INFO 2026-06-08 08:36:08 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr12:76,053,296
INFO 2026-06-08 08:36:08 MarkDuplicates Tracking 230378 as yet unmatched pairs. 9554 records in RAM.
INFO 2026-06-08 08:36:10 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr12:95,290,440
INFO 2026-06-08 08:36:10 MarkDuplicates Tracking 229194 as yet unmatched pairs. 8343 records in RAM.
INFO 2026-06-08 08:36:11 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr12:103,932,318
INFO 2026-06-08 08:36:11 MarkDuplicates Tracking 229504 as yet unmatched pairs. 8632 records in RAM.
INFO 2026-06-08 08:36:13 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr12:109,232,668
INFO 2026-06-08 08:36:13 MarkDuplicates Tracking 227698 as yet unmatched pairs. 6805 records in RAM.
INFO 2026-06-08 08:36:15 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr12:112,145,585
INFO 2026-06-08 08:36:15 MarkDuplicates Tracking 226821 as yet unmatched pairs. 5910 records in RAM.
INFO 2026-06-08 08:36:17 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr12:113,390,244
INFO 2026-06-08 08:36:17 MarkDuplicates Tracking 225898 as yet unmatched pairs. 4961 records in RAM.
INFO 2026-06-08 08:36:18 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr12:119,179,262
INFO 2026-06-08 08:36:18 MarkDuplicates Tracking 225601 as yet unmatched pairs. 4629 records in RAM.
INFO 2026-06-08 08:36:21 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 2s. Last read position: chr12:121,400,179
INFO 2026-06-08 08:36:21 MarkDuplicates Tracking 224447 as yet unmatched pairs. 3465 records in RAM.
INFO 2026-06-08 08:36:24 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 2s. Last read position: chr12:123,334,087
INFO 2026-06-08 08:36:24 MarkDuplicates Tracking 223593 as yet unmatched pairs. 2590 records in RAM.
INFO 2026-06-08 08:36:25 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr12:124,807,774
INFO 2026-06-08 08:36:25 MarkDuplicates Tracking 223116 as yet unmatched pairs. 2099 records in RAM.
INFO 2026-06-08 08:36:27 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr12:132,618,884
INFO 2026-06-08 08:36:27 MarkDuplicates Tracking 221467 as yet unmatched pairs. 431 records in RAM.
INFO 2026-06-08 08:36:29 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr13:21,177,083
INFO 2026-06-08 08:36:29 MarkDuplicates Tracking 221039 as yet unmatched pairs. 4405 records in RAM.
INFO 2026-06-08 08:36:31 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr13:35,543,501
INFO 2026-06-08 08:36:31 MarkDuplicates Tracking 220119 as yet unmatched pairs. 3468 records in RAM.
INFO 2026-06-08 08:36:33 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr13:46,491,040
INFO 2026-06-08 08:36:33 MarkDuplicates Tracking 219391 as yet unmatched pairs. 2721 records in RAM.
INFO 2026-06-08 08:36:35 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 2s. Last read position: chr13:77,093,212
INFO 2026-06-08 08:36:35 MarkDuplicates Tracking 218951 as yet unmatched pairs. 2256 records in RAM.
INFO 2026-06-08 08:36:37 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr13:102,767,400
INFO 2026-06-08 08:36:37 MarkDuplicates Tracking 218033 as yet unmatched pairs. 1308 records in RAM.
INFO 2026-06-08 08:36:39 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr13:113,306,558
INFO 2026-06-08 08:36:39 MarkDuplicates Tracking 217476 as yet unmatched pairs. 734 records in RAM.
INFO 2026-06-08 08:36:41 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 2s. Last read position: chr14:21,231,005
INFO 2026-06-08 08:36:41 MarkDuplicates Tracking 218474 as yet unmatched pairs. 18498 records in RAM.
INFO 2026-06-08 08:36:42 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr14:23,063,559
INFO 2026-06-08 08:36:42 MarkDuplicates Tracking 215818 as yet unmatched pairs. 15816 records in RAM.
INFO 2026-06-08 08:36:44 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr14:24,172,736
INFO 2026-06-08 08:36:44 MarkDuplicates Tracking 214619 as yet unmatched pairs. 14613 records in RAM.
INFO 2026-06-08 08:36:46 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr14:24,440,007
INFO 2026-06-08 08:36:46 MarkDuplicates Tracking 214209 as yet unmatched pairs. 14198 records in RAM.
INFO 2026-06-08 08:36:47 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr14:34,556,246
INFO 2026-06-08 08:36:47 MarkDuplicates Tracking 212849 as yet unmatched pairs. 12826 records in RAM.
INFO 2026-06-08 08:36:49 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr14:39,401,373
INFO 2026-06-08 08:36:49 MarkDuplicates Tracking 212163 as yet unmatched pairs. 12119 records in RAM.
INFO 2026-06-08 08:36:50 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr14:49,862,550
INFO 2026-06-08 08:36:50 MarkDuplicates Tracking 211589 as yet unmatched pairs. 11501 records in RAM.
INFO 2026-06-08 08:36:52 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr14:52,068,070
INFO 2026-06-08 08:36:52 MarkDuplicates Tracking 211124 as yet unmatched pairs. 11005 records in RAM.
INFO 2026-06-08 08:36:54 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr14:60,121,198
INFO 2026-06-08 08:36:54 MarkDuplicates Tracking 210540 as yet unmatched pairs. 10403 records in RAM.
INFO 2026-06-08 08:36:55 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr14:64,418,022
INFO 2026-06-08 08:36:55 MarkDuplicates Tracking 209939 as yet unmatched pairs. 9776 records in RAM.
INFO 2026-06-08 08:36:57 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr14:68,882,483
INFO 2026-06-08 08:36:57 MarkDuplicates Tracking 209031 as yet unmatched pairs. 8855 records in RAM.
INFO 2026-06-08 08:36:59 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr14:73,265,406
INFO 2026-06-08 08:36:59 MarkDuplicates Tracking 208122 as yet unmatched pairs. 7940 records in RAM.
INFO 2026-06-08 08:37:00 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr14:74,818,242
INFO 2026-06-08 08:37:00 MarkDuplicates Tracking 207639 as yet unmatched pairs. 7439 records in RAM.
INFO 2026-06-08 08:37:02 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr14:80,862,855
INFO 2026-06-08 08:37:02 MarkDuplicates Tracking 206528 as yet unmatched pairs. 6297 records in RAM.
INFO 2026-06-08 08:37:04 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr14:92,082,466
INFO 2026-06-08 08:37:04 MarkDuplicates Tracking 205806 as yet unmatched pairs. 5559 records in RAM.
INFO 2026-06-08 08:37:05 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr14:94,615,063
INFO 2026-06-08 08:37:05 MarkDuplicates Tracking 207387 as yet unmatched pairs. 7128 records in RAM.
INFO 2026-06-08 08:37:07 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr14:100,135,938
INFO 2026-06-08 08:37:07 MarkDuplicates Tracking 206811 as yet unmatched pairs. 6510 records in RAM.
INFO 2026-06-08 08:37:09 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 1s. Last read position: chr14:102,050,458
INFO 2026-06-08 08:37:09 MarkDuplicates Tracking 203878 as yet unmatched pairs. 3560 records in RAM.
INFO 2026-06-08 08:37:11 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr14:103,677,461
INFO 2026-06-08 08:37:11 MarkDuplicates Tracking 203109 as yet unmatched pairs. 2778 records in RAM.
INFO 2026-06-08 08:37:12 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 1s. Last read position: chr14:105,272,739
INFO 2026-06-08 08:37:12 MarkDuplicates Tracking 201641 as yet unmatched pairs. 1300 records in RAM.
INFO 2026-06-08 08:37:14 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,847
INFO 2026-06-08 08:37:14 MarkDuplicates Tracking 201644 as yet unmatched pairs. 1284 records in RAM.
INFO 2026-06-08 08:37:16 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 1s. Last read position: chr15:28,304,062
INFO 2026-06-08 08:37:16 MarkDuplicates Tracking 200035 as yet unmatched pairs. 13304 records in RAM.
INFO 2026-06-08 08:37:17 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr15:34,529,708
INFO 2026-06-08 08:37:17 MarkDuplicates Tracking 199348 as yet unmatched pairs. 12608 records in RAM.
INFO 2026-06-08 08:37:19 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 1s. Last read position: chr15:40,414,918
INFO 2026-06-08 08:37:19 MarkDuplicates Tracking 198848 as yet unmatched pairs. 12096 records in RAM.
INFO 2026-06-08 08:37:21 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 1s. Last read position: chr15:41,900,108
INFO 2026-06-08 08:37:21 MarkDuplicates Tracking 197756 as yet unmatched pairs. 10986 records in RAM.
INFO 2026-06-08 08:37:22 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 1s. Last read position: chr15:43,763,097
INFO 2026-06-08 08:37:22 MarkDuplicates Tracking 197915 as yet unmatched pairs. 11135 records in RAM.
INFO 2026-06-08 08:37:24 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr15:45,369,414
INFO 2026-06-08 08:37:24 MarkDuplicates Tracking 196586 as yet unmatched pairs. 9798 records in RAM.
INFO 2026-06-08 08:37:26 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 2s. Last read position: chr15:52,246,983
INFO 2026-06-08 08:37:26 MarkDuplicates Tracking 196120 as yet unmatched pairs. 9318 records in RAM.
INFO 2026-06-08 08:37:28 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 1s. Last read position: chr15:59,031,524
INFO 2026-06-08 08:37:28 MarkDuplicates Tracking 195334 as yet unmatched pairs. 8525 records in RAM.
INFO 2026-06-08 08:37:31 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 2s. Last read position: chr15:63,630,544
INFO 2026-06-08 08:37:31 MarkDuplicates Tracking 194522 as yet unmatched pairs. 7709 records in RAM.
INFO 2026-06-08 08:37:32 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr15:65,877,922
INFO 2026-06-08 08:37:32 MarkDuplicates Tracking 195132 as yet unmatched pairs. 8306 records in RAM.
INFO 2026-06-08 08:37:34 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr15:71,141,538
INFO 2026-06-08 08:37:34 MarkDuplicates Tracking 193339 as yet unmatched pairs. 6486 records in RAM.
INFO 2026-06-08 08:37:36 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 1s. Last read position: chr15:72,264,554
INFO 2026-06-08 08:37:36 MarkDuplicates Tracking 192390 as yet unmatched pairs. 5502 records in RAM.
INFO 2026-06-08 08:37:37 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 1s. Last read position: chr15:74,897,180
INFO 2026-06-08 08:37:37 MarkDuplicates Tracking 191142 as yet unmatched pairs. 4243 records in RAM.
INFO 2026-06-08 08:37:39 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 1s. Last read position: chr15:77,181,453
INFO 2026-06-08 08:37:39 MarkDuplicates Tracking 190249 as yet unmatched pairs. 3320 records in RAM.
INFO 2026-06-08 08:37:41 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr15:83,136,495
INFO 2026-06-08 08:37:41 MarkDuplicates Tracking 189552 as yet unmatched pairs. 2616 records in RAM.
INFO 2026-06-08 08:37:42 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 1s. Last read position: chr15:89,305,391
INFO 2026-06-08 08:37:42 MarkDuplicates Tracking 188732 as yet unmatched pairs. 1777 records in RAM.
INFO 2026-06-08 08:37:44 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 1s. Last read position: chr15:90,998,965
INFO 2026-06-08 08:37:44 MarkDuplicates Tracking 187829 as yet unmatched pairs. 868 records in RAM.
INFO 2026-06-08 08:37:46 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr16:62,618
INFO 2026-06-08 08:37:46 MarkDuplicates Tracking 187062 as yet unmatched pairs. 27134 records in RAM.
INFO 2026-06-08 08:37:48 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 1s. Last read position: chr16:671,956
INFO 2026-06-08 08:37:48 MarkDuplicates Tracking 186426 as yet unmatched pairs. 26488 records in RAM.
INFO 2026-06-08 08:37:49 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr16:1,445,523
INFO 2026-06-08 08:37:49 MarkDuplicates Tracking 185292 as yet unmatched pairs. 25352 records in RAM.
INFO 2026-06-08 08:37:51 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 1s. Last read position: chr16:1,998,248
INFO 2026-06-08 08:37:51 MarkDuplicates Tracking 183804 as yet unmatched pairs. 23858 records in RAM.
INFO 2026-06-08 08:37:53 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 2s. Last read position: chr16:2,277,601
INFO 2026-06-08 08:37:53 MarkDuplicates Tracking 182700 as yet unmatched pairs. 22749 records in RAM.
INFO 2026-06-08 08:37:55 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 1s. Last read position: chr16:2,766,391
INFO 2026-06-08 08:37:55 MarkDuplicates Tracking 182879 as yet unmatched pairs. 22924 records in RAM.
INFO 2026-06-08 08:37:56 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:15:11s. Time for last 1,000,000: 1s. Last read position: chr16:3,729,369
INFO 2026-06-08 08:37:56 MarkDuplicates Tracking 181014 as yet unmatched pairs. 21046 records in RAM.
INFO 2026-06-08 08:37:58 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 1s. Last read position: chr16:8,896,997
INFO 2026-06-08 08:37:58 MarkDuplicates Tracking 179735 as yet unmatched pairs. 19739 records in RAM.
INFO 2026-06-08 08:38:00 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 2s. Last read position: chr16:14,246,566
INFO 2026-06-08 08:38:00 MarkDuplicates Tracking 180788 as yet unmatched pairs. 20789 records in RAM.
INFO 2026-06-08 08:38:02 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 1s. Last read position: chr16:15,017,129
INFO 2026-06-08 08:38:02 MarkDuplicates Tracking 179436 as yet unmatched pairs. 19435 records in RAM.
INFO 2026-06-08 08:38:03 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:15:18s. Time for last 1,000,000: 1s. Last read position: chr16:16,329,392
INFO 2026-06-08 08:38:03 MarkDuplicates Tracking 178135 as yet unmatched pairs. 18128 records in RAM.
INFO 2026-06-08 08:38:04 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 1s. Last read position: chr16:18,401,650
INFO 2026-06-08 08:38:04 MarkDuplicates Tracking 177674 as yet unmatched pairs. 17665 records in RAM.
INFO 2026-06-08 08:38:06 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:15:21s. Time for last 1,000,000: 1s. Last read position: chr16:20,828,528
INFO 2026-06-08 08:38:06 MarkDuplicates Tracking 176799 as yet unmatched pairs. 16786 records in RAM.
INFO 2026-06-08 08:38:08 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 1s. Last read position: chr16:21,843,693
INFO 2026-06-08 08:38:08 MarkDuplicates Tracking 176864 as yet unmatched pairs. 16846 records in RAM.
INFO 2026-06-08 08:38:09 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 1s. Last read position: chr16:22,543,308
INFO 2026-06-08 08:38:09 MarkDuplicates Tracking 176198 as yet unmatched pairs. 16177 records in RAM.
INFO 2026-06-08 08:38:11 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:15:25s. Time for last 1,000,000: 1s. Last read position: chr16:28,388,153
INFO 2026-06-08 08:38:11 MarkDuplicates Tracking 176084 as yet unmatched pairs. 16059 records in RAM.
INFO 2026-06-08 08:38:13 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 2s. Last read position: chr16:29,381,470
INFO 2026-06-08 08:38:13 MarkDuplicates Tracking 174780 as yet unmatched pairs. 14749 records in RAM.
INFO 2026-06-08 08:38:15 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:15:29s. Time for last 1,000,000: 1s. Last read position: chr16:29,810,192
INFO 2026-06-08 08:38:15 MarkDuplicates Tracking 175417 as yet unmatched pairs. 15381 records in RAM.
INFO 2026-06-08 08:38:16 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:15:31s. Time for last 1,000,000: 1s. Last read position: chr16:30,193,014
INFO 2026-06-08 08:38:16 MarkDuplicates Tracking 173531 as yet unmatched pairs. 13489 records in RAM.
INFO 2026-06-08 08:38:18 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:15:33s. Time for last 1,000,000: 1s. Last read position: chr16:30,665,045
INFO 2026-06-08 08:38:18 MarkDuplicates Tracking 173104 as yet unmatched pairs. 13055 records in RAM.
INFO 2026-06-08 08:38:20 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:15:34s. Time for last 1,000,000: 1s. Last read position: chr16:31,180,162
INFO 2026-06-08 08:38:20 MarkDuplicates Tracking 174306 as yet unmatched pairs. 14244 records in RAM.
INFO 2026-06-08 08:38:21 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:15:36s. Time for last 1,000,000: 1s. Last read position: chr16:47,428,849
INFO 2026-06-08 08:38:21 MarkDuplicates Tracking 171314 as yet unmatched pairs. 11231 records in RAM.
INFO 2026-06-08 08:38:23 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:15:38s. Time for last 1,000,000: 1s. Last read position: chr16:54,283,644
INFO 2026-06-08 08:38:23 MarkDuplicates Tracking 170670 as yet unmatched pairs. 10582 records in RAM.
INFO 2026-06-08 08:38:24 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:15:39s. Time for last 1,000,000: 1s. Last read position: chr16:57,045,481
INFO 2026-06-08 08:38:24 MarkDuplicates Tracking 169485 as yet unmatched pairs. 9385 records in RAM.
INFO 2026-06-08 08:38:26 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:15:41s. Time for last 1,000,000: 1s. Last read position: chr16:66,727,688
INFO 2026-06-08 08:38:26 MarkDuplicates Tracking 168694 as yet unmatched pairs. 8579 records in RAM.
INFO 2026-06-08 08:38:28 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:15:43s. Time for last 1,000,000: 1s. Last read position: chr16:67,832,266
INFO 2026-06-08 08:38:28 MarkDuplicates Tracking 167551 as yet unmatched pairs. 7431 records in RAM.
INFO 2026-06-08 08:38:30 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:15:44s. Time for last 1,000,000: 1s. Last read position: chr16:68,927,600
INFO 2026-06-08 08:38:30 MarkDuplicates Tracking 166429 as yet unmatched pairs. 6305 records in RAM.
INFO 2026-06-08 08:38:31 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:15:46s. Time for last 1,000,000: 1s. Last read position: chr16:70,529,159
INFO 2026-06-08 08:38:31 MarkDuplicates Tracking 165785 as yet unmatched pairs. 5659 records in RAM.
INFO 2026-06-08 08:38:33 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:15:48s. Time for last 1,000,000: 1s. Last read position: chr16:72,959,393
INFO 2026-06-08 08:38:33 MarkDuplicates Tracking 165196 as yet unmatched pairs. 5065 records in RAM.
INFO 2026-06-08 08:38:34 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:15:49s. Time for last 1,000,000: 1s. Last read position: chr16:81,043,611
INFO 2026-06-08 08:38:34 MarkDuplicates Tracking 163855 as yet unmatched pairs. 3712 records in RAM.
INFO 2026-06-08 08:38:36 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:15:51s. Time for last 1,000,000: 1s. Last read position: chr16:85,657,478
INFO 2026-06-08 08:38:36 MarkDuplicates Tracking 163416 as yet unmatched pairs. 3253 records in RAM.
INFO 2026-06-08 08:38:39 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:15:53s. Time for last 1,000,000: 2s. Last read position: chr16:88,719,852
INFO 2026-06-08 08:38:39 MarkDuplicates Tracking 162605 as yet unmatched pairs. 2424 records in RAM.
INFO 2026-06-08 08:38:40 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:15:55s. Time for last 1,000,000: 1s. Last read position: chr16:89,645,973
INFO 2026-06-08 08:38:40 MarkDuplicates Tracking 161611 as yet unmatched pairs. 1400 records in RAM.
INFO 2026-06-08 08:38:42 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:15:57s. Time for last 1,000,000: 1s. Last read position: chr17:1,365,048
INFO 2026-06-08 08:38:42 MarkDuplicates Tracking 160616 as yet unmatched pairs. 48209 records in RAM.
INFO 2026-06-08 08:38:44 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:15:59s. Time for last 1,000,000: 1s. Last read position: chr17:2,387,068
INFO 2026-06-08 08:38:44 MarkDuplicates Tracking 159090 as yet unmatched pairs. 46675 records in RAM.
INFO 2026-06-08 08:38:46 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:16:01s. Time for last 1,000,000: 1s. Last read position: chr17:4,896,519
INFO 2026-06-08 08:38:46 MarkDuplicates Tracking 158338 as yet unmatched pairs. 45918 records in RAM.
INFO 2026-06-08 08:38:48 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:16:02s. Time for last 1,000,000: 1s. Last read position: chr17:7,260,679
INFO 2026-06-08 08:38:48 MarkDuplicates Tracking 158014 as yet unmatched pairs. 45585 records in RAM.
INFO 2026-06-08 08:38:49 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:16:04s. Time for last 1,000,000: 1s. Last read position: chr17:7,845,446
INFO 2026-06-08 08:38:49 MarkDuplicates Tracking 157103 as yet unmatched pairs. 44673 records in RAM.
INFO 2026-06-08 08:38:51 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:16:06s. Time for last 1,000,000: 1s. Last read position: chr17:15,787,437
INFO 2026-06-08 08:38:51 MarkDuplicates Tracking 155901 as yet unmatched pairs. 43463 records in RAM.
INFO 2026-06-08 08:38:53 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:16:08s. Time for last 1,000,000: 1s. Last read position: chr17:17,819,346
INFO 2026-06-08 08:38:53 MarkDuplicates Tracking 155761 as yet unmatched pairs. 43320 records in RAM.
INFO 2026-06-08 08:38:55 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:16:09s. Time for last 1,000,000: 1s. Last read position: chr17:27,043,515
INFO 2026-06-08 08:38:55 MarkDuplicates Tracking 153923 as yet unmatched pairs. 41478 records in RAM.
INFO 2026-06-08 08:38:56 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:16:11s. Time for last 1,000,000: 1s. Last read position: chr17:28,637,889
INFO 2026-06-08 08:38:56 MarkDuplicates Tracking 154004 as yet unmatched pairs. 41551 records in RAM.
INFO 2026-06-08 08:38:58 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:16:13s. Time for last 1,000,000: 1s. Last read position: chr17:29,165,915
INFO 2026-06-08 08:38:58 MarkDuplicates Tracking 152611 as yet unmatched pairs. 40148 records in RAM.
INFO 2026-06-08 08:39:00 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:16:14s. Time for last 1,000,000: 1s. Last read position: chr17:30,923,046
INFO 2026-06-08 08:39:00 MarkDuplicates Tracking 151753 as yet unmatched pairs. 39286 records in RAM.
INFO 2026-06-08 08:39:02 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:16:17s. Time for last 1,000,000: 2s. Last read position: chr17:32,594,308
INFO 2026-06-08 08:39:02 MarkDuplicates Tracking 150982 as yet unmatched pairs. 38512 records in RAM.
INFO 2026-06-08 08:39:04 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:16:18s. Time for last 1,000,000: 1s. Last read position: chr17:35,846,904
INFO 2026-06-08 08:39:04 MarkDuplicates Tracking 150961 as yet unmatched pairs. 38487 records in RAM.
INFO 2026-06-08 08:39:06 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:16:20s. Time for last 1,000,000: 1s. Last read position: chr17:37,553,701
INFO 2026-06-08 08:39:06 MarkDuplicates Tracking 149715 as yet unmatched pairs. 37240 records in RAM.
INFO 2026-06-08 08:39:07 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:16:22s. Time for last 1,000,000: 1s. Last read position: chr17:38,716,404
INFO 2026-06-08 08:39:07 MarkDuplicates Tracking 149928 as yet unmatched pairs. 37452 records in RAM.
INFO 2026-06-08 08:39:09 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:16:24s. Time for last 1,000,000: 1s. Last read position: chr17:39,440,667
INFO 2026-06-08 08:39:09 MarkDuplicates Tracking 148265 as yet unmatched pairs. 35786 records in RAM.
INFO 2026-06-08 08:39:11 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:16:25s. Time for last 1,000,000: 1s. Last read position: chr17:39,710,399
INFO 2026-06-08 08:39:11 MarkDuplicates Tracking 150321 as yet unmatched pairs. 37829 records in RAM.
INFO 2026-06-08 08:39:12 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:16:27s. Time for last 1,000,000: 1s. Last read position: chr17:39,723,916
INFO 2026-06-08 08:39:12 MarkDuplicates Tracking 150014 as yet unmatched pairs. 37521 records in RAM.
INFO 2026-06-08 08:39:14 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:16:29s. Time for last 1,000,000: 1s. Last read position: chr17:40,092,922
INFO 2026-06-08 08:39:14 MarkDuplicates Tracking 145507 as yet unmatched pairs. 33008 records in RAM.
INFO 2026-06-08 08:39:16 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:16:31s. Time for last 1,000,000: 1s. Last read position: chr17:40,404,234
INFO 2026-06-08 08:39:16 MarkDuplicates Tracking 144776 as yet unmatched pairs. 32275 records in RAM.
INFO 2026-06-08 08:39:18 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:16:32s. Time for last 1,000,000: 1s. Last read position: chr17:41,688,977
INFO 2026-06-08 08:39:18 MarkDuplicates Tracking 143368 as yet unmatched pairs. 30862 records in RAM.
INFO 2026-06-08 08:39:19 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:16:34s. Time for last 1,000,000: 1s. Last read position: chr17:42,121,202
INFO 2026-06-08 08:39:19 MarkDuplicates Tracking 142458 as yet unmatched pairs. 29950 records in RAM.
INFO 2026-06-08 08:39:21 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:16:36s. Time for last 1,000,000: 1s. Last read position: chr17:42,659,533
INFO 2026-06-08 08:39:21 MarkDuplicates Tracking 141539 as yet unmatched pairs. 29021 records in RAM.
INFO 2026-06-08 08:39:23 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:16:37s. Time for last 1,000,000: 1s. Last read position: chr17:43,201,732
INFO 2026-06-08 08:39:23 MarkDuplicates Tracking 141034 as yet unmatched pairs. 28512 records in RAM.
INFO 2026-06-08 08:39:24 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:16:39s. Time for last 1,000,000: 1s. Last read position: chr17:44,320,063
INFO 2026-06-08 08:39:24 MarkDuplicates Tracking 140591 as yet unmatched pairs. 28063 records in RAM.
INFO 2026-06-08 08:39:26 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:16:41s. Time for last 1,000,000: 1s. Last read position: chr17:45,149,734
INFO 2026-06-08 08:39:26 MarkDuplicates Tracking 139453 as yet unmatched pairs. 26923 records in RAM.
INFO 2026-06-08 08:39:28 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:16:43s. Time for last 1,000,000: 1s. Last read position: chr17:46,512,459
INFO 2026-06-08 08:39:28 MarkDuplicates Tracking 138087 as yet unmatched pairs. 25557 records in RAM.
INFO 2026-06-08 08:39:30 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:16:45s. Time for last 1,000,000: 2s. Last read position: chr17:47,669,701
INFO 2026-06-08 08:39:30 MarkDuplicates Tracking 137990 as yet unmatched pairs. 25458 records in RAM.
INFO 2026-06-08 08:39:32 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:16:47s. Time for last 1,000,000: 2s. Last read position: chr17:49,298,583
INFO 2026-06-08 08:39:32 MarkDuplicates Tracking 137735 as yet unmatched pairs. 25196 records in RAM.
INFO 2026-06-08 08:41:32 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 119s. Last read position: chr17:50,187,036
INFO 2026-06-08 08:41:32 MarkDuplicates Tracking 147649 as yet unmatched pairs. 35104 records in RAM.
INFO 2026-06-08 08:41:33 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,006
INFO 2026-06-08 08:41:33 MarkDuplicates Tracking 145145 as yet unmatched pairs. 32597 records in RAM.
INFO 2026-06-08 08:41:35 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,130
INFO 2026-06-08 08:41:35 MarkDuplicates Tracking 149376 as yet unmatched pairs. 36825 records in RAM.
INFO 2026-06-08 08:41:37 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,498
INFO 2026-06-08 08:41:37 MarkDuplicates Tracking 147271 as yet unmatched pairs. 34720 records in RAM.
INFO 2026-06-08 08:41:39 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 2s. Last read position: chr17:50,379,209
INFO 2026-06-08 08:41:39 MarkDuplicates Tracking 132005 as yet unmatched pairs. 19453 records in RAM.
INFO 2026-06-08 08:41:40 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 1s. Last read position: chr17:53,106,314
INFO 2026-06-08 08:41:40 MarkDuplicates Tracking 131071 as yet unmatched pairs. 18516 records in RAM.
INFO 2026-06-08 08:41:42 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 1s. Last read position: chr17:58,005,435
INFO 2026-06-08 08:41:42 MarkDuplicates Tracking 131094 as yet unmatched pairs. 18533 records in RAM.
INFO 2026-06-08 08:41:44 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 1s. Last read position: chr17:59,661,487
INFO 2026-06-08 08:41:44 MarkDuplicates Tracking 133347 as yet unmatched pairs. 20774 records in RAM.
INFO 2026-06-08 08:41:45 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 1s. Last read position: chr17:59,688,242
INFO 2026-06-08 08:41:45 MarkDuplicates Tracking 134630 as yet unmatched pairs. 22055 records in RAM.
INFO 2026-06-08 08:41:47 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 1s. Last read position: chr17:62,560,016
INFO 2026-06-08 08:41:47 MarkDuplicates Tracking 128720 as yet unmatched pairs. 16138 records in RAM.
INFO 2026-06-08 08:41:49 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chr17:63,837,016
INFO 2026-06-08 08:41:49 MarkDuplicates Tracking 128346 as yet unmatched pairs. 15760 records in RAM.
INFO 2026-06-08 08:41:50 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 1s. Last read position: chr17:66,990,137
INFO 2026-06-08 08:41:50 MarkDuplicates Tracking 127694 as yet unmatched pairs. 15107 records in RAM.
INFO 2026-06-08 08:41:52 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 1s. Last read position: chr17:68,512,507
INFO 2026-06-08 08:41:52 MarkDuplicates Tracking 128029 as yet unmatched pairs. 15437 records in RAM.
INFO 2026-06-08 08:41:54 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr17:74,204,169
INFO 2026-06-08 08:41:54 MarkDuplicates Tracking 127854 as yet unmatched pairs. 15252 records in RAM.
INFO 2026-06-08 08:41:55 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr17:75,239,835
INFO 2026-06-08 08:41:55 MarkDuplicates Tracking 125315 as yet unmatched pairs. 12703 records in RAM.
INFO 2026-06-08 08:41:57 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 2s. Last read position: chr17:75,615,012
INFO 2026-06-08 08:41:57 MarkDuplicates Tracking 124167 as yet unmatched pairs. 11548 records in RAM.
INFO 2026-06-08 08:41:59 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 1s. Last read position: chr17:76,007,194
INFO 2026-06-08 08:41:59 MarkDuplicates Tracking 122793 as yet unmatched pairs. 10159 records in RAM.
INFO 2026-06-08 08:42:00 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr17:77,194,841
INFO 2026-06-08 08:42:00 MarkDuplicates Tracking 121659 as yet unmatched pairs. 9018 records in RAM.
INFO 2026-06-08 08:42:02 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chr17:78,972,345
INFO 2026-06-08 08:42:02 MarkDuplicates Tracking 121715 as yet unmatched pairs. 9060 records in RAM.
INFO 2026-06-08 08:42:04 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 1s. Last read position: chr17:80,109,972
INFO 2026-06-08 08:42:04 MarkDuplicates Tracking 119691 as yet unmatched pairs. 7020 records in RAM.
INFO 2026-06-08 08:42:05 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr17:80,346,720
INFO 2026-06-08 08:42:05 MarkDuplicates Tracking 120132 as yet unmatched pairs. 7452 records in RAM.
INFO 2026-06-08 08:42:07 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chr17:81,253,119
INFO 2026-06-08 08:42:07 MarkDuplicates Tracking 117954 as yet unmatched pairs. 5257 records in RAM.
INFO 2026-06-08 08:42:09 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 2s. Last read position: chr17:81,824,510
INFO 2026-06-08 08:42:09 MarkDuplicates Tracking 116961 as yet unmatched pairs. 4246 records in RAM.
INFO 2026-06-08 08:42:11 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: chr17:82,035,883
INFO 2026-06-08 08:42:11 MarkDuplicates Tracking 115799 as yet unmatched pairs. 3081 records in RAM.
INFO 2026-06-08 08:42:13 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 1s. Last read position: chr17:82,087,082
INFO 2026-06-08 08:42:13 MarkDuplicates Tracking 115762 as yet unmatched pairs. 3035 records in RAM.
INFO 2026-06-08 08:42:15 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 2s. Last read position: chr17:82,444,112
INFO 2026-06-08 08:42:15 MarkDuplicates Tracking 114970 as yet unmatched pairs. 2231 records in RAM.
INFO 2026-06-08 08:42:17 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 2s. Last read position: chr18:3,478,332
INFO 2026-06-08 08:42:17 MarkDuplicates Tracking 112467 as yet unmatched pairs. 6629 records in RAM.
INFO 2026-06-08 08:42:19 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chr18:13,390,672
INFO 2026-06-08 08:42:19 MarkDuplicates Tracking 112522 as yet unmatched pairs. 6671 records in RAM.
INFO 2026-06-08 08:42:20 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chr18:21,070,561
INFO 2026-06-08 08:42:20 MarkDuplicates Tracking 111766 as yet unmatched pairs. 5903 records in RAM.
INFO 2026-06-08 08:42:22 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chr18:26,039,381
INFO 2026-06-08 08:42:22 MarkDuplicates Tracking 111693 as yet unmatched pairs. 5830 records in RAM.
INFO 2026-06-08 08:42:24 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 1s. Last read position: chr18:36,122,090
INFO 2026-06-08 08:42:24 MarkDuplicates Tracking 113181 as yet unmatched pairs. 7309 records in RAM.
INFO 2026-06-08 08:42:25 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr18:44,951,413
INFO 2026-06-08 08:42:25 MarkDuplicates Tracking 109173 as yet unmatched pairs. 3282 records in RAM.
INFO 2026-06-08 08:42:27 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 1s. Last read position: chr18:50,286,034
INFO 2026-06-08 08:42:27 MarkDuplicates Tracking 108307 as yet unmatched pairs. 2408 records in RAM.
INFO 2026-06-08 08:42:29 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 1s. Last read position: chr18:62,187,808
INFO 2026-06-08 08:42:29 MarkDuplicates Tracking 107925 as yet unmatched pairs. 2025 records in RAM.
INFO 2026-06-08 08:42:30 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chr18:74,784,436
INFO 2026-06-08 08:42:30 MarkDuplicates Tracking 106535 as yet unmatched pairs. 628 records in RAM.
INFO 2026-06-08 08:42:32 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chr19:763,528
INFO 2026-06-08 08:42:32 MarkDuplicates Tracking 105510 as yet unmatched pairs. 42134 records in RAM.
INFO 2026-06-08 08:42:34 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: chr19:1,255,464
INFO 2026-06-08 08:42:34 MarkDuplicates Tracking 104963 as yet unmatched pairs. 41587 records in RAM.
INFO 2026-06-08 08:42:36 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 2s. Last read position: chr19:2,121,805
INFO 2026-06-08 08:42:36 MarkDuplicates Tracking 103495 as yet unmatched pairs. 40115 records in RAM.
INFO 2026-06-08 08:42:37 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chr19:3,543,262
INFO 2026-06-08 08:42:37 MarkDuplicates Tracking 102691 as yet unmatched pairs. 39307 records in RAM.
INFO 2026-06-08 08:42:40 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 2s. Last read position: chr19:4,513,019
INFO 2026-06-08 08:42:40 MarkDuplicates Tracking 101581 as yet unmatched pairs. 38187 records in RAM.
INFO 2026-06-08 08:42:42 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 2s. Last read position: chr19:5,693,333
INFO 2026-06-08 08:42:42 MarkDuplicates Tracking 100314 as yet unmatched pairs. 36916 records in RAM.
INFO 2026-06-08 08:42:44 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chr19:7,535,831
INFO 2026-06-08 08:42:44 MarkDuplicates Tracking 99272 as yet unmatched pairs. 35872 records in RAM.
INFO 2026-06-08 08:42:45 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 1s. Last read position: chr19:8,554,560
INFO 2026-06-08 08:42:45 MarkDuplicates Tracking 98202 as yet unmatched pairs. 34796 records in RAM.
INFO 2026-06-08 08:42:47 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 1s. Last read position: chr19:10,631,943
INFO 2026-06-08 08:42:47 MarkDuplicates Tracking 97746 as yet unmatched pairs. 34337 records in RAM.
INFO 2026-06-08 08:42:49 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 1s. Last read position: chr19:11,361,290
INFO 2026-06-08 08:42:49 MarkDuplicates Tracking 96350 as yet unmatched pairs. 32941 records in RAM.
INFO 2026-06-08 08:42:50 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 1s. Last read position: chr19:12,763,272
INFO 2026-06-08 08:42:50 MarkDuplicates Tracking 95675 as yet unmatched pairs. 32266 records in RAM.
INFO 2026-06-08 08:42:52 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: chr19:13,933,951
INFO 2026-06-08 08:42:52 MarkDuplicates Tracking 94260 as yet unmatched pairs. 30847 records in RAM.
INFO 2026-06-08 08:42:53 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 1s. Last read position: chr19:15,107,453
INFO 2026-06-08 08:42:53 MarkDuplicates Tracking 93259 as yet unmatched pairs. 29844 records in RAM.
INFO 2026-06-08 08:42:55 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: chr19:15,360,845
INFO 2026-06-08 08:42:55 MarkDuplicates Tracking 92333 as yet unmatched pairs. 28912 records in RAM.
INFO 2026-06-08 08:42:56 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 1s. Last read position: chr19:17,211,687
INFO 2026-06-08 08:42:56 MarkDuplicates Tracking 91921 as yet unmatched pairs. 28496 records in RAM.
INFO 2026-06-08 08:42:58 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 1s. Last read position: chr19:18,266,213
INFO 2026-06-08 08:42:58 MarkDuplicates Tracking 90327 as yet unmatched pairs. 26900 records in RAM.
INFO 2026-06-08 08:43:00 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: chr19:19,025,247
INFO 2026-06-08 08:43:00 MarkDuplicates Tracking 89526 as yet unmatched pairs. 26098 records in RAM.
INFO 2026-06-08 08:43:01 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: chr19:32,405,887
INFO 2026-06-08 08:43:01 MarkDuplicates Tracking 88201 as yet unmatched pairs. 24770 records in RAM.
INFO 2026-06-08 08:43:04 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 2s. Last read position: chr19:35,119,385
INFO 2026-06-08 08:43:04 MarkDuplicates Tracking 93277 as yet unmatched pairs. 29844 records in RAM.
INFO 2026-06-08 08:43:06 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 1s. Last read position: chr19:35,738,402
INFO 2026-06-08 08:43:06 MarkDuplicates Tracking 86353 as yet unmatched pairs. 22918 records in RAM.
INFO 2026-06-08 08:43:07 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 1s. Last read position: chr19:37,565,957
INFO 2026-06-08 08:43:07 MarkDuplicates Tracking 84977 as yet unmatched pairs. 21541 records in RAM.
INFO 2026-06-08 08:43:09 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 1s. Last read position: chr19:38,840,333
INFO 2026-06-08 08:43:09 MarkDuplicates Tracking 84219 as yet unmatched pairs. 20782 records in RAM.
INFO 2026-06-08 08:43:10 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 1s. Last read position: chr19:39,893,323
INFO 2026-06-08 08:43:10 MarkDuplicates Tracking 83401 as yet unmatched pairs. 19962 records in RAM.
INFO 2026-06-08 08:43:12 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 1s. Last read position: chr19:40,441,912
INFO 2026-06-08 08:43:12 MarkDuplicates Tracking 83482 as yet unmatched pairs. 20043 records in RAM.
INFO 2026-06-08 08:43:14 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 1s. Last read position: chr19:41,438,297
INFO 2026-06-08 08:43:14 MarkDuplicates Tracking 81248 as yet unmatched pairs. 17801 records in RAM.
INFO 2026-06-08 08:43:15 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 1s. Last read position: chr19:42,091,202
INFO 2026-06-08 08:43:15 MarkDuplicates Tracking 80378 as yet unmatched pairs. 16927 records in RAM.
INFO 2026-06-08 08:43:17 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 1s. Last read position: chr19:42,293,038
INFO 2026-06-08 08:43:17 MarkDuplicates Tracking 82356 as yet unmatched pairs. 18895 records in RAM.
INFO 2026-06-08 08:43:19 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 2s. Last read position: chr19:44,177,502
INFO 2026-06-08 08:43:19 MarkDuplicates Tracking 78313 as yet unmatched pairs. 14842 records in RAM.
INFO 2026-06-08 08:43:21 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 1s. Last read position: chr19:44,914,873
INFO 2026-06-08 08:43:21 MarkDuplicates Tracking 78382 as yet unmatched pairs. 14907 records in RAM.
INFO 2026-06-08 08:43:23 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 1s. Last read position: chr19:45,702,909
INFO 2026-06-08 08:43:23 MarkDuplicates Tracking 75969 as yet unmatched pairs. 12493 records in RAM.
INFO 2026-06-08 08:43:24 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 1s. Last read position: chr19:46,919,339
INFO 2026-06-08 08:43:24 MarkDuplicates Tracking 75272 as yet unmatched pairs. 11793 records in RAM.
INFO 2026-06-08 08:43:26 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: chr19:47,754,534
INFO 2026-06-08 08:43:26 MarkDuplicates Tracking 74744 as yet unmatched pairs. 11263 records in RAM.
INFO 2026-06-08 08:43:28 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 2s. Last read position: chr19:48,956,234
INFO 2026-06-08 08:43:28 MarkDuplicates Tracking 72873 as yet unmatched pairs. 9391 records in RAM.
INFO 2026-06-08 08:43:31 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 2s. Last read position: chr19:49,537,141
INFO 2026-06-08 08:43:31 MarkDuplicates Tracking 71960 as yet unmatched pairs. 8474 records in RAM.
INFO 2026-06-08 08:43:32 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 1s. Last read position: chr19:49,836,276
INFO 2026-06-08 08:43:32 MarkDuplicates Tracking 70827 as yet unmatched pairs. 7341 records in RAM.
INFO 2026-06-08 08:43:34 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:20:48s. Time for last 1,000,000: 1s. Last read position: chr19:50,506,176
INFO 2026-06-08 08:43:34 MarkDuplicates Tracking 69760 as yet unmatched pairs. 6268 records in RAM.
INFO 2026-06-08 08:43:35 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:20:50s. Time for last 1,000,000: 1s. Last read position: chr19:53,993,168
INFO 2026-06-08 08:43:35 MarkDuplicates Tracking 69308 as yet unmatched pairs. 5816 records in RAM.
INFO 2026-06-08 08:43:37 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 1s. Last read position: chr19:54,456,342
INFO 2026-06-08 08:43:37 MarkDuplicates Tracking 68585 as yet unmatched pairs. 5089 records in RAM.
INFO 2026-06-08 08:43:38 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:20:53s. Time for last 1,000,000: 1s. Last read position: chr19:55,388,017
INFO 2026-06-08 08:43:38 MarkDuplicates Tracking 67867 as yet unmatched pairs. 4371 records in RAM.
INFO 2026-06-08 08:43:40 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:20:55s. Time for last 1,000,000: 1s. Last read position: chr19:56,664,588
INFO 2026-06-08 08:43:40 MarkDuplicates Tracking 65500 as yet unmatched pairs. 1987 records in RAM.
INFO 2026-06-08 08:43:41 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:20:56s. Time for last 1,000,000: 1s. Last read position: chr19:57,852,182
INFO 2026-06-08 08:43:41 MarkDuplicates Tracking 65872 as yet unmatched pairs. 2358 records in RAM.
INFO 2026-06-08 08:43:43 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 1s. Last read position: chr19:58,548,041
INFO 2026-06-08 08:43:43 MarkDuplicates Tracking 65631 as yet unmatched pairs. 2112 records in RAM.
INFO 2026-06-08 08:43:44 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:20:59s. Time for last 1,000,000: 1s. Last read position: chr20:2,116,966
INFO 2026-06-08 08:43:44 MarkDuplicates Tracking 63181 as yet unmatched pairs. 16341 records in RAM.
INFO 2026-06-08 08:43:46 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 1s. Last read position: chr20:3,690,096
INFO 2026-06-08 08:43:46 MarkDuplicates Tracking 63179 as yet unmatched pairs. 16339 records in RAM.
INFO 2026-06-08 08:43:48 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:21:03s. Time for last 1,000,000: 1s. Last read position: chr20:10,035,111
INFO 2026-06-08 08:43:48 MarkDuplicates Tracking 60881 as yet unmatched pairs. 14040 records in RAM.
INFO 2026-06-08 08:43:50 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:21:05s. Time for last 1,000,000: 1s. Last read position: chr20:18,041,624
INFO 2026-06-08 08:43:50 MarkDuplicates Tracking 60907 as yet unmatched pairs. 14066 records in RAM.
INFO 2026-06-08 08:43:51 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:21:06s. Time for last 1,000,000: 1s. Last read position: chr20:24,983,976
INFO 2026-06-08 08:43:51 MarkDuplicates Tracking 60402 as yet unmatched pairs. 13555 records in RAM.
INFO 2026-06-08 08:43:53 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 1s. Last read position: chr20:32,202,058
INFO 2026-06-08 08:43:53 MarkDuplicates Tracking 58581 as yet unmatched pairs. 11727 records in RAM.
INFO 2026-06-08 08:43:55 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 1s. Last read position: chr20:34,534,735
INFO 2026-06-08 08:43:55 MarkDuplicates Tracking 58347 as yet unmatched pairs. 11493 records in RAM.
INFO 2026-06-08 08:43:56 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:21:11s. Time for last 1,000,000: 1s. Last read position: chr20:35,699,699
INFO 2026-06-08 08:43:56 MarkDuplicates Tracking 57609 as yet unmatched pairs. 10749 records in RAM.
INFO 2026-06-08 08:43:58 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:21:12s. Time for last 1,000,000: 1s. Last read position: chr20:37,198,411
INFO 2026-06-08 08:43:58 MarkDuplicates Tracking 56305 as yet unmatched pairs. 9438 records in RAM.
INFO 2026-06-08 08:44:00 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:21:14s. Time for last 1,000,000: 1s. Last read position: chr20:41,471,896
INFO 2026-06-08 08:44:00 MarkDuplicates Tracking 55108 as yet unmatched pairs. 8237 records in RAM.
INFO 2026-06-08 08:44:01 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:21:16s. Time for last 1,000,000: 1s. Last read position: chr20:45,418,863
INFO 2026-06-08 08:44:01 MarkDuplicates Tracking 54643 as yet unmatched pairs. 7761 records in RAM.
INFO 2026-06-08 08:44:03 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:21:18s. Time for last 1,000,000: 1s. Last read position: chr20:47,238,996
INFO 2026-06-08 08:44:03 MarkDuplicates Tracking 53323 as yet unmatched pairs. 6437 records in RAM.
INFO 2026-06-08 08:44:05 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:21:20s. Time for last 1,000,000: 2s. Last read position: chr20:49,260,463
INFO 2026-06-08 08:44:05 MarkDuplicates Tracking 52529 as yet unmatched pairs. 5642 records in RAM.
INFO 2026-06-08 08:44:07 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:21:22s. Time for last 1,000,000: 1s. Last read position: chr20:52,172,272
INFO 2026-06-08 08:44:07 MarkDuplicates Tracking 51707 as yet unmatched pairs. 4817 records in RAM.
INFO 2026-06-08 08:44:09 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:21:23s. Time for last 1,000,000: 1s. Last read position: chr20:58,910,710
INFO 2026-06-08 08:44:09 MarkDuplicates Tracking 51848 as yet unmatched pairs. 4957 records in RAM.
INFO 2026-06-08 08:44:10 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:21:25s. Time for last 1,000,000: 1s. Last read position: chr20:62,327,273
INFO 2026-06-08 08:44:10 MarkDuplicates Tracking 50189 as yet unmatched pairs. 3293 records in RAM.
INFO 2026-06-08 08:44:12 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:21:27s. Time for last 1,000,000: 1s. Last read position: chr20:63,520,857
INFO 2026-06-08 08:44:12 MarkDuplicates Tracking 51704 as yet unmatched pairs. 4795 records in RAM.
INFO 2026-06-08 08:44:14 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:21:29s. Time for last 1,000,000: 1s. Last read position: chr20:63,944,299
INFO 2026-06-08 08:44:14 MarkDuplicates Tracking 47588 as yet unmatched pairs. 677 records in RAM.
INFO 2026-06-08 08:44:15 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:21:30s. Time for last 1,000,000: 1s. Last read position: chr21:8,213,164
INFO 2026-06-08 08:44:15 MarkDuplicates Tracking 46629 as yet unmatched pairs. 8229 records in RAM.
INFO 2026-06-08 08:44:16 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:21:31s. Time for last 1,000,000: 1s. Last read position: chr21:8,254,527
INFO 2026-06-08 08:44:16 MarkDuplicates Tracking 45689 as yet unmatched pairs. 7279 records in RAM.
INFO 2026-06-08 08:44:18 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:21:32s. Time for last 1,000,000: 1s. Last read position: chr21:8,397,729
INFO 2026-06-08 08:44:18 MarkDuplicates Tracking 45220 as yet unmatched pairs. 6808 records in RAM.
INFO 2026-06-08 08:44:19 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:21:33s. Time for last 1,000,000: 1s. Last read position: chr21:8,440,801
INFO 2026-06-08 08:44:19 MarkDuplicates Tracking 44393 as yet unmatched pairs. 5978 records in RAM.
INFO 2026-06-08 08:44:20 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:21:35s. Time for last 1,000,000: 1s. Last read position: chr21:8,988,483
INFO 2026-06-08 08:44:20 MarkDuplicates Tracking 43160 as yet unmatched pairs. 4741 records in RAM.
INFO 2026-06-08 08:44:21 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:21:36s. Time for last 1,000,000: 1s. Last read position: chr21:32,345,458
INFO 2026-06-08 08:44:21 MarkDuplicates Tracking 42693 as yet unmatched pairs. 4268 records in RAM.
INFO 2026-06-08 08:44:23 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:21:38s. Time for last 1,000,000: 1s. Last read position: chr21:36,239,775
INFO 2026-06-08 08:44:23 MarkDuplicates Tracking 41871 as yet unmatched pairs. 3443 records in RAM.
INFO 2026-06-08 08:44:25 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:21:39s. Time for last 1,000,000: 1s. Last read position: chr21:41,907,030
INFO 2026-06-08 08:44:25 MarkDuplicates Tracking 40920 as yet unmatched pairs. 2486 records in RAM.
INFO 2026-06-08 08:44:26 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:21:41s. Time for last 1,000,000: 1s. Last read position: chr21:44,856,324
INFO 2026-06-08 08:44:26 MarkDuplicates Tracking 40464 as yet unmatched pairs. 2022 records in RAM.
INFO 2026-06-08 08:44:28 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:21:42s. Time for last 1,000,000: 1s. Last read position: chr21:46,124,660
INFO 2026-06-08 08:44:28 MarkDuplicates Tracking 39873 as yet unmatched pairs. 1428 records in RAM.
INFO 2026-06-08 08:44:29 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:21:44s. Time for last 1,000,000: 1s. Last read position: chr22:18,173,198
INFO 2026-06-08 08:44:29 MarkDuplicates Tracking 38403 as yet unmatched pairs. 16814 records in RAM.
INFO 2026-06-08 08:44:31 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:21:46s. Time for last 1,000,000: 1s. Last read position: chr22:20,729,372
INFO 2026-06-08 08:44:31 MarkDuplicates Tracking 37284 as yet unmatched pairs. 15694 records in RAM.
INFO 2026-06-08 08:44:33 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:21:48s. Time for last 1,000,000: 2s. Last read position: chr22:23,295,056
INFO 2026-06-08 08:44:33 MarkDuplicates Tracking 36709 as yet unmatched pairs. 15118 records in RAM.
INFO 2026-06-08 08:44:35 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:21:49s. Time for last 1,000,000: 1s. Last read position: chr22:24,440,905
INFO 2026-06-08 08:44:35 MarkDuplicates Tracking 35135 as yet unmatched pairs. 13544 records in RAM.
INFO 2026-06-08 08:44:37 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:21:51s. Time for last 1,000,000: 2s. Last read position: chr22:28,795,432
INFO 2026-06-08 08:44:37 MarkDuplicates Tracking 39422 as yet unmatched pairs. 17827 records in RAM.
INFO 2026-06-08 08:44:39 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:21:53s. Time for last 1,000,000: 1s. Last read position: chr22:29,286,928
INFO 2026-06-08 08:44:39 MarkDuplicates Tracking 36805 as yet unmatched pairs. 15210 records in RAM.
INFO 2026-06-08 08:44:40 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:21:55s. Time for last 1,000,000: 1s. Last read position: chr22:30,409,224
INFO 2026-06-08 08:44:40 MarkDuplicates Tracking 32547 as yet unmatched pairs. 10952 records in RAM.
INFO 2026-06-08 08:44:42 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:21:57s. Time for last 1,000,000: 1s. Last read position: chr22:31,713,509
INFO 2026-06-08 08:44:42 MarkDuplicates Tracking 31638 as yet unmatched pairs. 10043 records in RAM.
INFO 2026-06-08 08:44:44 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:21:59s. Time for last 1,000,000: 1s. Last read position: chr22:36,288,753
INFO 2026-06-08 08:44:44 MarkDuplicates Tracking 31223 as yet unmatched pairs. 9622 records in RAM.
INFO 2026-06-08 08:44:45 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:22:00s. Time for last 1,000,000: 1s. Last read position: chr22:37,769,035
INFO 2026-06-08 08:44:45 MarkDuplicates Tracking 30053 as yet unmatched pairs. 8452 records in RAM.
INFO 2026-06-08 08:44:47 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:22:02s. Time for last 1,000,000: 1s. Last read position: chr22:39,134,719
INFO 2026-06-08 08:44:47 MarkDuplicates Tracking 28903 as yet unmatched pairs. 7302 records in RAM.
INFO 2026-06-08 08:44:49 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:22:03s. Time for last 1,000,000: 1s. Last read position: chr22:41,131,429
INFO 2026-06-08 08:44:49 MarkDuplicates Tracking 27997 as yet unmatched pairs. 6394 records in RAM.
INFO 2026-06-08 08:44:50 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:22:05s. Time for last 1,000,000: 1s. Last read position: chr22:42,060,359
INFO 2026-06-08 08:44:50 MarkDuplicates Tracking 27152 as yet unmatched pairs. 5546 records in RAM.
INFO 2026-06-08 08:44:52 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:22:06s. Time for last 1,000,000: 1s. Last read position: chr22:45,199,879
INFO 2026-06-08 08:44:52 MarkDuplicates Tracking 26319 as yet unmatched pairs. 4713 records in RAM.
INFO 2026-06-08 08:44:53 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:22:08s. Time for last 1,000,000: 1s. Last read position: chr22:46,464,227
INFO 2026-06-08 08:44:53 MarkDuplicates Tracking 27863 as yet unmatched pairs. 6257 records in RAM.
INFO 2026-06-08 08:44:55 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:22:10s. Time for last 1,000,000: 1s. Last read position: chr22:50,206,407
INFO 2026-06-08 08:44:55 MarkDuplicates Tracking 23987 as yet unmatched pairs. 2381 records in RAM.
INFO 2026-06-08 08:44:57 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:22:11s. Time for last 1,000,000: 1s. Last read position: chr22:50,506,880
INFO 2026-06-08 08:44:57 MarkDuplicates Tracking 24255 as yet unmatched pairs. 2649 records in RAM.
INFO 2026-06-08 08:44:58 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:22:13s. Time for last 1,000,000: 1s. Last read position: chrX:2,204,451
INFO 2026-06-08 08:44:58 MarkDuplicates Tracking 21355 as yet unmatched pairs. 10479 records in RAM.
INFO 2026-06-08 08:45:00 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:22:15s. Time for last 1,000,000: 1s. Last read position: chrX:16,702,780
INFO 2026-06-08 08:45:00 MarkDuplicates Tracking 20545 as yet unmatched pairs. 9669 records in RAM.
INFO 2026-06-08 08:45:02 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:22:16s. Time for last 1,000,000: 1s. Last read position: chrX:38,178,285
INFO 2026-06-08 08:45:02 MarkDuplicates Tracking 19866 as yet unmatched pairs. 8967 records in RAM.
INFO 2026-06-08 08:45:03 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:22:18s. Time for last 1,000,000: 1s. Last read position: chrX:45,148,558
INFO 2026-06-08 08:45:03 MarkDuplicates Tracking 19109 as yet unmatched pairs. 8208 records in RAM.
INFO 2026-06-08 08:45:05 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:22:20s. Time for last 1,000,000: 1s. Last read position: chrX:49,030,332
INFO 2026-06-08 08:45:05 MarkDuplicates Tracking 18700 as yet unmatched pairs. 7799 records in RAM.
INFO 2026-06-08 08:45:06 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:22:21s. Time for last 1,000,000: 1s. Last read position: chrX:53,538,835
INFO 2026-06-08 08:45:06 MarkDuplicates Tracking 17692 as yet unmatched pairs. 6791 records in RAM.
INFO 2026-06-08 08:45:08 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:22:23s. Time for last 1,000,000: 1s. Last read position: chrX:56,564,022
INFO 2026-06-08 08:45:08 MarkDuplicates Tracking 16934 as yet unmatched pairs. 6032 records in RAM.
INFO 2026-06-08 08:45:10 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:22:25s. Time for last 1,000,000: 1s. Last read position: chrX:71,253,199
INFO 2026-06-08 08:45:10 MarkDuplicates Tracking 16017 as yet unmatched pairs. 5113 records in RAM.
INFO 2026-06-08 08:45:12 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:22:27s. Time for last 1,000,000: 2s. Last read position: chrX:77,599,745
INFO 2026-06-08 08:45:12 MarkDuplicates Tracking 16780 as yet unmatched pairs. 5876 records in RAM.
INFO 2026-06-08 08:45:14 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:22:29s. Time for last 1,000,000: 1s. Last read position: chrX:101,625,258
INFO 2026-06-08 08:45:14 MarkDuplicates Tracking 14680 as yet unmatched pairs. 3774 records in RAM.
INFO 2026-06-08 08:45:15 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:22:30s. Time for last 1,000,000: 1s. Last read position: chrX:120,526,598
INFO 2026-06-08 08:45:15 MarkDuplicates Tracking 13873 as yet unmatched pairs. 2967 records in RAM.
INFO 2026-06-08 08:45:17 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:22:32s. Time for last 1,000,000: 1s. Last read position: chrX:136,879,054
INFO 2026-06-08 08:45:17 MarkDuplicates Tracking 13515 as yet unmatched pairs. 2609 records in RAM.
INFO 2026-06-08 08:45:19 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:22:33s. Time for last 1,000,000: 1s. Last read position: chrX:153,954,189
INFO 2026-06-08 08:45:19 MarkDuplicates Tracking 12539 as yet unmatched pairs. 1630 records in RAM.
INFO 2026-06-08 08:45:20 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:22:35s. Time for last 1,000,000: 1s. Last read position: chrX:154,465,937
INFO 2026-06-08 08:45:20 MarkDuplicates Tracking 11837 as yet unmatched pairs. 928 records in RAM.
INFO 2026-06-08 08:45:22 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:22:37s. Time for last 1,000,000: 1s. Last read position: chrM:6,137
INFO 2026-06-08 08:45:22 MarkDuplicates Tracking 12820 as yet unmatched pairs. 2662 records in RAM.
INFO 2026-06-08 08:45:23 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:22:38s. Time for last 1,000,000: 1s. Last read position: GL000009.2:26,713
INFO 2026-06-08 08:45:23 MarkDuplicates Tracking 10151 as yet unmatched pairs. 26 records in RAM.
INFO 2026-06-08 08:45:24 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:22:39s. Time for last 1,000,000: 1s. Last read position: GL000220.1:115,547
INFO 2026-06-08 08:45:24 MarkDuplicates Tracking 8681 as yet unmatched pairs. 155 records in RAM.
INFO 2026-06-08 08:45:25 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:22:40s. Time for last 1,000,000: 0s. Last read position: GL000220.1:158,131
INFO 2026-06-08 08:45:25 MarkDuplicates Tracking 8663 as yet unmatched pairs. 137 records in RAM.
INFO 2026-06-08 08:45:27 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:22:41s. Time for last 1,000,000: 1s. Last read position: KI270733.1:124,532
INFO 2026-06-08 08:45:27 MarkDuplicates Tracking 8456 as yet unmatched pairs. 8386 records in RAM.
INFO 2026-06-08 08:45:28 MarkDuplicates Read 636,000,000 records. Elapsed time: 00:22:43s. Time for last 1,000,000: 1s. Last read position: KI270733.1:133,162
INFO 2026-06-08 08:45:28 MarkDuplicates Tracking 6385 as yet unmatched pairs. 6315 records in RAM.
INFO 2026-06-08 08:45:29 MarkDuplicates Read 637,000,000 records. Elapsed time: 00:22:44s. Time for last 1,000,000: 1s. Last read position: KI270733.1:175,017
INFO 2026-06-08 08:45:29 MarkDuplicates Tracking 3702 as yet unmatched pairs. 3632 records in RAM.
INFO 2026-06-08 08:45:30 MarkDuplicates Read 638,000,000 records. Elapsed time: 00:22:45s. Time for last 1,000,000: 1s. Last read position: KI270751.1:39,133
INFO 2026-06-08 08:45:30 MarkDuplicates Tracking 27 as yet unmatched pairs. 27 records in RAM.
INFO 2026-06-08 08:45:30 MarkDuplicates Read 638022779 records. 0 pairs never matched.
INFO 2026-06-08 08:46:21 MarkDuplicates After buildSortedReadEndLists freeMemory: 204133664; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:46:21 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 08:46:24 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 08:46:24 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:46:47 OpticalDuplicateFinder Large duplicate set. size = 1405
INFO 2026-06-08 08:46:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,394
INFO 2026-06-08 08:46:51 OpticalDuplicateFinder Large duplicate set. size = 1003
INFO 2026-06-08 08:46:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,440
INFO 2026-06-08 08:46:51 OpticalDuplicateFinder Large duplicate set. size = 1312
INFO 2026-06-08 08:46:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,572
INFO 2026-06-08 08:46:51 OpticalDuplicateFinder Large duplicate set. size = 1385
INFO 2026-06-08 08:46:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,153
INFO 2026-06-08 08:47:24 OpticalDuplicateFinder Large duplicate set. size = 1002
INFO 2026-06-08 08:47:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,920
INFO 2026-06-08 08:47:55 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 08:47:55 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:49:07 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 08:49:07 MarkDuplicates After generateDuplicateIndexes freeMemory: 204000576; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:49:07 MarkDuplicates Marking 275204826 records as duplicates.
INFO 2026-06-08 08:49:07 MarkDuplicates Found 31005703 optical duplicate clusters.
INFO 2026-06-08 08:49:07 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 08:49:24 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:16s. Time for last 10,000,000: 16s. Last read position: chr1:27,668,283
INFO 2026-06-08 08:49:41 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:33s. Time for last 10,000,000: 16s. Last read position: chr1:53,210,633
INFO 2026-06-08 08:49:58 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:50s. Time for last 10,000,000: 16s. Last read position: chr1:121,374,832
INFO 2026-06-08 08:50:14 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:06s. Time for last 10,000,000: 16s. Last read position: chr1:155,204,846
INFO 2026-06-08 08:50:31 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:23s. Time for last 10,000,000: 16s. Last read position: chr1:179,908,640
INFO 2026-06-08 08:50:47 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:40s. Time for last 10,000,000: 16s. Last read position: chr1:221,739,468
INFO 2026-06-08 08:51:04 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:56s. Time for last 10,000,000: 16s. Last read position: chr2:27,370,703
INFO 2026-06-08 08:51:21 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:13s. Time for last 10,000,000: 16s. Last read position: chr2:85,390,812
INFO 2026-06-08 08:51:37 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:29s. Time for last 10,000,000: 16s. Last read position: chr2:158,663,283
INFO 2026-06-08 08:51:54 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:46s. Time for last 10,000,000: 16s. Last read position: chr2:215,414,843
INFO 2026-06-08 08:52:10 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:02s. Time for last 10,000,000: 16s. Last read position: chr3:12,637,510
INFO 2026-06-08 08:52:27 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:19s. Time for last 10,000,000: 16s. Last read position: chr3:51,959,058
INFO 2026-06-08 08:52:43 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:35s. Time for last 10,000,000: 16s. Last read position: chr3:134,177,968
INFO 2026-06-08 08:52:59 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:52s. Time for last 10,000,000: 16s. Last read position: chr4:3,512,986
INFO 2026-06-08 08:53:16 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:08s. Time for last 10,000,000: 16s. Last read position: chr4:139,058,921
INFO 2026-06-08 08:53:33 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:25s. Time for last 10,000,000: 16s. Last read position: chr5:65,998,497
INFO 2026-06-08 08:53:50 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:42s. Time for last 10,000,000: 16s. Last read position: chr5:141,864,541
INFO 2026-06-08 08:54:06 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:58s. Time for last 10,000,000: 16s. Last read position: chr5:181,238,212
INFO 2026-06-08 08:54:22 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:14s. Time for last 10,000,000: 16s. Last read position: chr6:32,116,552
INFO 2026-06-08 08:54:39 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:31s. Time for last 10,000,000: 16s. Last read position: chr6:87,256,435
INFO 2026-06-08 08:54:55 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:47s. Time for last 10,000,000: 16s. Last read position: chr7:5,527,606
INFO 2026-06-08 08:55:12 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:04s. Time for last 10,000,000: 16s. Last read position: chr7:74,912,149
INFO 2026-06-08 08:55:28 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:20s. Time for last 10,000,000: 16s. Last read position: chr7:102,553,440
INFO 2026-06-08 08:55:45 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:37s. Time for last 10,000,000: 16s. Last read position: chr7:150,372,626
INFO 2026-06-08 08:56:01 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:53s. Time for last 10,000,000: 16s. Last read position: chr8:53,967,814
INFO 2026-06-08 08:56:18 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:10s. Time for last 10,000,000: 16s. Last read position: chr8:115,619,588
INFO 2026-06-08 08:56:34 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:27s. Time for last 10,000,000: 16s. Last read position: chr8:144,263,047
INFO 2026-06-08 08:56:51 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:43s. Time for last 10,000,000: 16s. Last read position: chr9:93,335,569
INFO 2026-06-08 08:57:08 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:00s. Time for last 10,000,000: 16s. Last read position: chr9:134,429,898
INFO 2026-06-08 08:57:24 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:16s. Time for last 10,000,000: 16s. Last read position: chr10:44,991,937
INFO 2026-06-08 08:57:41 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:33s. Time for last 10,000,000: 16s. Last read position: chr10:100,988,894
INFO 2026-06-08 08:57:57 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:49s. Time for last 10,000,000: 16s. Last read position: chr11:1,761,383
INFO 2026-06-08 08:58:14 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:06s. Time for last 10,000,000: 16s. Last read position: chr11:58,579,526
INFO 2026-06-08 08:58:30 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:22s. Time for last 10,000,000: 16s. Last read position: chr11:66,707,640
INFO 2026-06-08 08:58:47 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:39s. Time for last 10,000,000: 16s. Last read position: chr11:73,367,661
INFO 2026-06-08 08:59:03 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:55s. Time for last 10,000,000: 16s. Last read position: chr12:6,225,479
INFO 2026-06-08 08:59:20 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:12s. Time for last 10,000,000: 16s. Last read position: chr12:52,901,939
INFO 2026-06-08 08:59:36 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:28s. Time for last 10,000,000: 16s. Last read position: chr12:103,932,318
INFO 2026-06-08 08:59:53 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:45s. Time for last 10,000,000: 16s. Last read position: chr13:35,543,501
INFO 2026-06-08 09:00:10 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:02s. Time for last 10,000,000: 16s. Last read position: chr14:39,401,373
INFO 2026-06-08 09:00:26 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:19s. Time for last 10,000,000: 16s. Last read position: chr14:94,615,063
INFO 2026-06-08 09:00:44 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:36s. Time for last 10,000,000: 17s. Last read position: chr15:43,763,097
INFO 2026-06-08 09:01:00 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:53s. Time for last 10,000,000: 16s. Last read position: chr15:83,136,495
INFO 2026-06-08 09:01:17 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:12:09s. Time for last 10,000,000: 16s. Last read position: chr16:8,896,997
INFO 2026-06-08 09:01:34 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:26s. Time for last 10,000,000: 16s. Last read position: chr16:29,810,192
INFO 2026-06-08 09:01:50 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:42s. Time for last 10,000,000: 16s. Last read position: chr16:70,529,159
INFO 2026-06-08 09:02:07 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:12:59s. Time for last 10,000,000: 16s. Last read position: chr17:7,845,446
INFO 2026-06-08 09:02:23 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:15s. Time for last 10,000,000: 16s. Last read position: chr17:38,716,404
INFO 2026-06-08 09:02:40 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:13:32s. Time for last 10,000,000: 16s. Last read position: chr17:44,320,063
INFO 2026-06-08 09:02:56 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:13:48s. Time for last 10,000,000: 16s. Last read position: chr17:53,106,314
INFO 2026-06-08 09:03:12 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:14:04s. Time for last 10,000,000: 16s. Last read position: chr17:75,615,012
INFO 2026-06-08 09:03:29 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:14:21s. Time for last 10,000,000: 16s. Last read position: chr17:82,444,112
INFO 2026-06-08 09:03:46 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:14:38s. Time for last 10,000,000: 16s. Last read position: chr19:763,528
INFO 2026-06-08 09:04:03 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:14:55s. Time for last 10,000,000: 16s. Last read position: chr19:12,763,272
INFO 2026-06-08 09:04:19 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:15:11s. Time for last 10,000,000: 16s. Last read position: chr19:37,565,957
INFO 2026-06-08 09:04:36 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:15:28s. Time for last 10,000,000: 16s. Last read position: chr19:46,919,339
INFO 2026-06-08 09:04:52 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:15:44s. Time for last 10,000,000: 16s. Last read position: chr19:57,852,182
INFO 2026-06-08 09:05:09 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:16:02s. Time for last 10,000,000: 17s. Last read position: chr20:37,198,411
INFO 2026-06-08 09:05:26 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:16:18s. Time for last 10,000,000: 16s. Last read position: chr21:8,213,164
INFO 2026-06-08 09:05:42 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:16:34s. Time for last 10,000,000: 15s. Last read position: chr22:18,173,198
INFO 2026-06-08 09:05:59 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:16:51s. Time for last 10,000,000: 16s. Last read position: chr22:39,134,719
INFO 2026-06-08 09:06:16 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:17:08s. Time for last 10,000,000: 16s. Last read position: chrX:45,148,558
INFO 2026-06-08 09:06:33 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:17:25s. Time for last 10,000,000: 16s. Last read position: chrX:154,465,937
INFO 2026-06-08 09:06:50 MarkDuplicates Written 640,000,000 records. Elapsed time: 00:17:42s. Time for last 10,000,000: 16s. Last read position: */*
INFO 2026-06-08 09:06:52 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:06:52 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:06:52 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:06:52 MarkDuplicates Before output close freeMemory: 203935984; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:06:52 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:06:52 MarkDuplicates After output close freeMemory: 104196376; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:06:52 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 44.16 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory