Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/a3a35375494929a96f234c2fa39af1/tih_rna_sample_00105_23H5VFLT4_s21_2.fastp.fastq.gz
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/ensembl/Homo_sapiens.GRCh38.102.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/a68a8424a6d29ef6b2ae878e6eb71a/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/b98e3c81f942c27eced3763638b9e2/kallisto
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/a68a8424a6d29ef6b2ae878e6eb71a/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/a3a35375494929a96f234c2fa39af1/tih_rna_sample_00105_23H5VFLT4_s21_1.fastp.fastq.gz
==> STAGING COMPLETE (6 inputs)
[quant] fragment length distribution will be estimated from the data
[index] k-mer length: 31
[index] number of targets: 194,360
[index] number of k-mers: 112,035,259
[quant] running in paired-end mode
[quant] will process pair 1: tih_rna_sample_00105_23H5VFLT4_s21_1.fastp.fastq.gz
tih_rna_sample_00105_23H5VFLT4_s21_2.fastp.fastq.gz
[quant] finding pseudoalignments for the reads ...
[progress] 1M reads processed (79.2% mapped)
[progress] 2M reads processed (79.2% mapped)
[progress] 3M reads processed (79.2% mapped)
[progress] 4M reads processed (79.2% mapped)
[progress] 5M reads processed (79.2% mapped)
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[progress] 16M reads processed (79.2% mapped)
[progress] 17M reads processed (79.2% mapped)
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[progress] 19M reads processed (79.2% mapped)
[progress] 20M reads processed (79.2% mapped)
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[progress] 28M reads processed (79.2% mapped)
[progress] 29M reads processed (79.2% mapped)
[progress] 30M reads processed (79.2% mapped)
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[progress] 42M reads processed (79.2% mapped)
[progress] 43M reads processed (79.2% mapped)
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[progress] 46M reads processed (79.2% mapped)
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[progress] 50M reads processed (79.2% mapped)
[progress] 51M reads processed (79.2% mapped)
[progress] 52M reads processed (79.2% mapped)
[progress] 53M reads processed (79.2% mapped)
[progress] 54M reads processed (79.2% mapped) done
[quant] processed 55,119,781 reads, 43,662,849 reads pseudoaligned
[quant] estimated average fragment length: 103.0
[ em] quantifying the abundances ... done
[ em] the Expectation-Maximization algorithm ran for 1,257 rounds