Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/8adfc669ae379e898ee9f1442903b3/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/8adfc669ae379e898ee9f1442903b3/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/3a7b49a850a43100c077525aedee73/tih_rna_sample_00087_23H5VFLT4_s17.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/a9deae1cf7801188a0adef90860515/tih_rna_sample_00087_23H5VFLT4_s17.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00087_23H5VFLT4_s17.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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