Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/7e40f56165a19134e1aba9b60dab0b/GM24385_0001_RNA_0001_23H5VFLT4_s48.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/ff93ec59be2d2d7fc3f225e8641bd3/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/ff93ec59be2d2d7fc3f225e8641bd3/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/9d83ec513ae19da8f8dfe36ba5274b/GM24385_0001_RNA_0001_23H5VFLT4_s48.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory