Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/4e4cf180d1346b4ab6a60b916fd0a4/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/5fbc51a805066aeb16dbc3810c27aa/GM24385_0001_RNA_0001_23H5VFLT4_s16.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/4e4cf180d1346b4ab6a60b916fd0a4/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 284583447
unpaired = 4008771
MERGED PAIRED END READS = 284583447
MATES PROCESSED = 573175665
TOTAL READS     = 288592218
DISTINCT READS  = 1.00419e+08
DISTINCT COUNTS = 1064
MAX COUNT       = 577477
COUNTS OF 1     = 4.30793e+07
MAX TERMS       = 100
OBSERVED COUNTS (577478)
1	43079303
2	20830145
3	12172349
4	7743865
5	5080549
6	3379488
7	2272743
8	1549264
9	1071326
10	755950
11	541134
12	396039
13	294989
14	221454
15	170633
16	133327
17	104872
18	84169
19	68629
20	56013
21	46348
22	38918
23	33175
24	27863
25	23902
26	20650
27	18013
28	15730
29	14070
30	12470
31	11271
32	9767
33	8856
34	7958
35	7171
36	6667
37	5913
38	5458
39	5119
40	4696
41	4235
42	4036
43	3552
44	3314
45	3165
46	2953
47	2753
48	2515
49	2357
50	2257
51	2112
52	1957
53	1861
54	1711
55	1695
56	1567
57	1478
58	1446
59	1307
60	1234
61	1270
62	1149
63	1080
64	1024
65	956
66	923
67	896
68	874
69	833
70	799
71	772
72	710
73	661
74	736
75	694
76	596
77	694
78	552
79	526
80	526
81	553
82	474
83	494
84	452
85	490
86	441
87	404
88	428
89	388
90	359
91	365
92	380
93	369
94	328
95	318
96	321
97	337
98	312
99	286
100	279
101	273
102	270
103	255
104	245
105	242
106	240
107	224
108	242
109	243
110	213
111	220
112	230
113	230
114	225
115	230
116	213
117	177
118	169
119	165
120	164
121	158
122	159
123	148
124	161
125	165
126	136
127	143
128	130
129	154
130	162
131	141
132	117
133	134
134	138
135	133
136	114
137	126
138	129
139	126
140	106
141	116
142	101
143	112
144	111
145	97
146	112
147	115
148	107
149	101
150	102
151	95
152	103
153	76
154	88
155	98
156	93
157	95
158	91
159	81
160	70
161	93
162	101
163	84
164	87
165	83
166	65
167	69
168	60
169	60
170	80
171	59
172	70
173	58
174	63
175	55
176	65
177	60
178	62
179	63
180	64
181	55
182	77
183	51
184	60
185	53
186	48
187	49
188	50
189	53
190	50
191	54
192	59
193	52
194	47
195	53
196	51
197	55
198	52
199	54
200	56
201	47
202	50
203	43
204	30
205	33
206	44
207	58
208	45
209	46
210	40
211	43
212	31
213	38
214	38
215	45
216	38
217	36
218	37
219	34
220	43
221	43
222	30
223	31
224	45
225	40
226	36
227	35
228	41
229	36
230	35
231	37
232	38
233	27
234	28
235	32
236	33
237	31
238	33
239	20
240	32
241	21
242	29
243	30
244	28
245	29
246	29
247	37
248	25
249	21
250	18
251	35
252	18
253	33
254	15
255	35
256	34
257	26
258	25
259	21
260	35
261	27
262	23
263	24
264	20
265	28
266	22
267	19
268	19
269	7
270	16
271	23
272	19
273	22
274	24
275	19
276	16
277	20
278	19
279	24
280	18
281	26
282	20
283	14
284	13
285	22
286	14
287	19
288	15
289	18
290	10
291	25
292	15
293	19
294	12
295	19
296	13
297	11
298	9
299	16
300	19
301	11
302	12
303	14
304	13
305	12
306	18
307	20
308	17
309	17
310	17
311	15
312	20
313	11
314	15
315	15
316	13
317	12
318	19
319	9
320	16
321	15
322	8
323	19
324	13
325	21
326	12
327	8
328	10
329	12
330	15
331	13
332	9
333	11
334	13
335	11
336	15
337	8
338	10
339	11
340	10
341	9
342	15
343	11
344	10
345	7
346	12
347	10
348	8
349	16
350	10
351	14
352	9
353	13
354	11
355	13
356	7
357	8
358	8
359	13
360	16
361	9
362	9
363	15
364	10
365	6
366	13
367	15
368	11
369	8
370	8
371	11
372	16
373	9
374	6
375	9
376	9
377	8
378	8
379	5
380	8
381	4
382	9
383	10
384	4
385	9
386	10
387	4
388	8
389	9
390	7
391	4
392	9
393	3
394	5
395	6
396	5
397	12
398	6
399	12
400	4
401	7
402	5
403	7
404	6
405	7
406	2
407	12
408	6
409	11
410	10
411	8
412	10
413	8
414	6
415	8
416	5
417	5
418	6
419	9
420	7
421	2
422	3
423	6
424	8
425	4
426	7
427	4
428	2
429	7
430	6
431	8
432	5
433	11
434	5
435	8
436	8
437	4
438	5
439	2
440	8
441	5
442	8
443	4
444	5
445	5
446	6
447	6
448	4
449	9
450	2
451	4
452	2
453	6
454	2
455	7
456	3
457	3
458	2
459	6
460	6
461	9
462	9
463	3
464	5
465	5
466	5
467	7
468	6
469	4
470	8
471	7
472	3
473	5
474	6
475	2
476	10
477	4
478	3
479	8
480	4
481	6
482	3
483	6
484	1
485	3
486	3
487	4
488	6
489	4
490	4
491	5
492	6
493	1
494	4
495	6
496	5
497	3
498	2
499	2
500	1
501	4
502	6
503	4
504	4
505	8
506	3
507	6
508	3
509	2
510	1
511	4
512	3
513	3
514	3
515	3
516	6
517	2
518	3
519	3
520	6
521	4
522	2
523	3
524	7
525	4
526	3
527	8
528	4
529	3
530	3
531	2
533	3
534	1
535	4
536	4
537	5
538	5
539	4
540	4
541	5
542	5
543	1
544	3
545	4
546	2
547	4
548	6
549	4
550	4
551	4
552	6
553	6
554	5
555	1
556	2
557	2
558	1
559	3
560	3
561	2
562	1
563	5
564	2
565	2
566	3
567	4
568	2
569	2
570	2
571	2
572	3
573	4
574	2
575	2
576	3
577	2
578	4
579	1
580	2
581	4
582	1
583	2
584	3
586	1
587	5
588	3
589	4
590	1
591	2
592	2
595	1
596	1
597	1
598	3
599	3
600	4
602	4
603	5
604	2
605	3
607	2
608	3
609	1
610	1
611	3
612	3
613	1
614	3
615	1
617	5
618	2
619	1
620	2
621	2
622	4
624	3
625	3
627	5
628	3
629	1
630	1
631	3
632	1
636	1
637	2
638	4
639	4
640	2
641	3
642	3
643	3
644	2
646	1
647	3
648	4
650	3
651	4
652	3
653	1
654	1
655	2
657	1
658	4
659	1
660	1
661	1
662	1
663	3
665	3
667	1
668	2
669	1
670	1
671	5
672	3
673	1
674	5
675	1
676	2
677	1
678	6
679	1
680	1
681	4
683	1
684	1
685	3
686	4
687	1
688	1
689	1
690	1
691	4
692	3
693	1
694	1
695	4
696	1
697	2
698	2
699	1
700	6
701	2
702	3
703	2
704	2
705	1
706	2
707	1
708	2
710	3
711	1
713	2
714	2
716	1
717	1
718	1
719	2
720	4
722	4
723	1
725	1
726	2
727	2
728	1
731	4
733	5
735	3
736	1
737	2
739	1
740	1
742	1
743	3
744	2
745	3
746	1
749	1
750	3
751	1
752	3
753	1
754	1
757	3
758	1
759	2
761	4
763	1
764	2
765	2
766	1
768	1
769	1
770	1
773	5
774	2
776	2
780	1
781	1
782	2
783	2
784	2
785	1
786	1
788	1
789	1
790	1
792	2
794	1
795	2
797	1
799	1
801	1
803	3
804	1
806	1
808	1
809	3
810	1
812	1
813	3
815	1
816	1
819	1
821	2
822	1
823	1
825	2
827	2
829	1
830	1
831	1
832	3
833	1
834	1
835	4
836	1
837	2
838	4
839	2
840	1
841	2
842	2
843	1
844	1
845	2
846	1
847	1
848	1
849	1
851	1
852	2
855	1
856	1
857	3
858	3
861	1
863	2
865	2
866	2
868	1
871	2
873	1
874	1
877	1
878	1
879	1
880	2
881	1
882	1
883	2
884	2
885	3
890	1
891	1
892	1
893	1
894	1
895	1
896	1
898	1
899	1
901	2
902	2
904	1
906	2
907	1
909	1
910	2
911	2
913	1
918	3
919	1
922	1
923	2
925	1
929	1
932	1
934	1
935	1
936	1
943	3
945	1
946	2
947	1
948	1
952	1
953	3
955	1
957	1
958	1
959	1
961	2
962	2
963	1
964	1
966	1
971	2
972	1
973	2
975	1
977	1
978	1
979	1
980	1
981	1
982	1
983	1
986	1
989	1
991	1
995	1
999	1
1004	3
1006	1
1012	1
1014	1
1015	1
1021	2
1023	2
1026	1
1027	2
1031	1
1033	1
1036	1
1046	1
1047	1
1051	1
1054	1
1055	1
1057	1
1059	1
1067	1
1069	1
1070	1
1073	1
1074	1
1076	1
1077	1
1079	1
1080	1
1081	1
1082	1
1089	2
1090	1
1092	1
1094	1
1096	1
1099	1
1106	1
1107	1
1114	2
1124	1
1126	1
1131	1
1136	1
1144	1
1145	2
1147	1
1148	1
1149	1
1151	1
1154	2
1158	1
1161	1
1166	1
1168	1
1169	2
1176	1
1180	1
1184	1
1188	2
1196	1
1202	1
1205	1
1218	1
1221	1
1228	1
1230	1
1232	2
1234	1
1235	1
1238	1
1239	1
1247	1
1252	1
1256	1
1257	1
1270	1
1273	2
1274	1
1277	1
1279	1
1280	1
1285	1
1287	1
1293	2
1297	1
1302	1
1303	1
1304	2
1311	1
1315	1
1327	1
1353	2
1359	1
1360	1
1366	1
1368	1
1369	1
1370	1
1385	1
1404	2
1406	1
1407	1
1416	1
1419	1
1428	2
1433	1
1443	1
1448	1
1451	1
1452	1
1458	1
1459	1
1476	1
1480	1
1491	1
1495	1
1513	1
1516	1
1517	1
1518	1
1528	1
1532	1
1535	1
1541	1
1547	1
1559	1
1565	1
1572	1
1583	1
1587	1
1590	1
1596	1
1629	1
1640	1
1649	1
1650	1
1662	2
1666	1
1673	1
1680	1
1694	1
1718	1
1722	1
1727	1
1776	1
1790	1
1821	1
1847	1
1885	1
1923	1
1927	1
1932	1
1935	1
1963	1
1967	1
1990	1
2002	1
2039	1
2050	1
2074	1
2089	1
2094	1
2111	1
2121	1
2144	1
2152	1
2168	1
2215	1
2234	1
2384	1
2393	1
2471	1
2506	1
2509	1
2561	1
2966	1
3075	1
3088	1
3316	1
3322	1
3359	1
3373	1
3558	1
3863	1
3868	1
4918	1
6414	1
7479	1
11051	1
25219	1
577477	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
.._.......__......_._._...._......_....__..._...._._.__............_....
........._..._............._............_.......
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]