.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:SAMTOOLS_VIEW_ALIGNMENT_CRAM (tih_rna_sample_00388_23H5VFLT4_s22)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/bcde65eb9ef2d9018c20273dd73fcf/.command.log
Size: 829 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:SAMTOOLS_VIEW_ALIGNMENT_CRAM (tih_rna_sample_00388_23H5VFLT4_s22)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/eeb559832ea0b8d15dd9cf5577c8a9/tih_rna_sample_00388_23H5VFLT4_s22.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/bcde65eb9ef2d9018c20273dd73fcf/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/bcde65eb9ef2d9018c20273dd73fcf/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/8f1d392a3a9cab84583aa6b6661b32/tih_rna_sample_00388_23H5VFLT4_s22.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory