AIH curated blacklist: matched 7 fusion rows (breakpoint_ID in qualified set)
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ARRIBA FILTERING SUMMARY
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Total fusions: 79
Pass (FILTER=PASS): 3 (3.8%)
Fail (FILTER=FAIL): 76 (96.2%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 7
All 7 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 19
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 12
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 12
confidence_below_min(low<high): 5
confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 5
confidence_below_min(medium<high);aih_curated_blacklist: 4
confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 3
confidence_below_min(medium<high): 3
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 3
confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 2
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 2
aih_curated_blacklist: 1
confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 1
confidence_below_min(low<high);total_reads_below_min(2.0<8.0);aih_curated_blacklist: 1
confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 1
Breakdown by confidence:
high: 3 pass, 1 fail (total: 4)
low: 0 pass, 61 fail (total: 61)
medium: 0 pass, 14 fail (total: 14)
Arriba filter: 79 rows -> 3 PASS; wrote GM24385_0001_RNA_0001_23H5VFLT4_s16.arriba.fusions.filtered.tsv and GM24385_0001_RNA_0001_23H5VFLT4_s16.arriba.fusions.filtered_pass_only.tsv
Summary written to: GM24385_0001_RNA_0001_23H5VFLT4_s16.arriba.fusions.filter_summary.txt