Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/f0e805fd99822d2b12e4c87bc4fa2f/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/bb2c44ace0ead90c965921f3266c26/tih_rna_sample_00096_23H5VFLT4_s11.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/f0e805fd99822d2b12e4c87bc4fa2f/.command.run
==> STAGING COMPLETE (3 inputs)
PAIRED_END_BAM_INPUT
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paired = 295016953
unpaired = 3594055
MERGED PAIRED END READS = 295016953
MATES PROCESSED = 593627961
TOTAL READS = 298611008
DISTINCT READS = 1.55045e+08
DISTINCT COUNTS = 666
MAX COUNT = 419842
COUNTS OF 1 = 9.11591e+07
MAX TERMS = 100
OBSERVED COUNTS (419843)
1 91159089
2 34328964
3 14339973
4 6574263
5 3283923
6 1778925
7 1040514
8 649675
9 429748
10 296729
11 214705
12 160460
13 122271
14 95751
15 76479
16 62452
17 50863
18 42637
19 36092
20 30412
21 26233
22 22723
23 19790
24 17275
25 15199
26 13327
27 11782
28 10688
29 9527
30 8576
31 7893
32 7078
33 6166
34 5760
35 5313
36 4662
37 4512
38 3980
39 3696
40 3516
41 3202
42 3018
43 2810
44 2575
45 2470
46 2276
47 2097
48 2021
49 1785
50 1730
51 1601
52 1578
53 1400
54 1403
55 1310
56 1204
57 1182
58 1061
59 1071
60 951
61 901
62 838
63 811
64 859
65 780
66 705
67 741
68 639
69 648
70 614
71 568
72 576
73 493
74 504
75 490
76 473
77 443
78 412
79 409
80 361
81 382
82 376
83 352
84 318
85 293
86 316
87 316
88 265
89 268
90 284
91 259
92 284
93 252
94 222
95 228
96 210
97 221
98 199
99 205
100 192
101 188
102 179
103 184
104 148
105 175
106 157
107 150
108 174
109 144
110 156
111 137
112 140
113 122
114 118
115 130
116 149
117 121
118 109
119 117
120 129
121 106
122 109
123 106
124 93
125 107
126 93
127 103
128 92
129 93
130 81
131 77
132 76
133 89
134 72
135 66
136 79
137 75
138 55
139 88
140 64
141 55
142 55
143 63
144 57
145 63
146 45
147 51
148 56
149 53
150 53
151 39
152 49
153 40
154 56
155 52
156 44
157 47
158 41
159 50
160 44
161 47
162 42
163 57
164 34
165 51
166 48
167 33
168 37
169 39
170 42
171 49
172 50
173 30
174 35
175 25
176 25
177 42
178 30
179 37
180 34
181 21
182 34
183 30
184 38
185 31
186 22
187 36
188 38
189 20
190 26
191 25
192 27
193 26
194 29
195 19
196 32
197 28
198 23
199 31
200 18
201 25
202 25
203 25
204 21
205 15
206 16
207 20
208 21
209 18
210 25
211 18
212 22
213 23
214 16
215 14
216 13
217 19
218 20
219 16
220 19
221 17
222 20
223 20
224 15
225 24
226 18
227 10
228 17
229 15
230 8
231 10
232 7
233 12
234 16
235 14
236 9
237 11
238 12
239 15
240 13
241 14
242 15
243 12
244 12
245 9
246 7
247 17
248 13
249 9
250 13
251 8
252 8
253 10
254 8
255 5
256 11
257 8
258 11
259 9
260 11
261 15
262 7
263 15
264 13
265 7
266 6
267 3
268 10
269 6
270 4
271 12
272 7
273 8
274 5
275 10
276 6
277 6
278 8
279 5
280 6
281 9
282 7
283 9
284 8
285 10
286 8
287 5
288 8
289 7
290 11
291 8
292 7
293 4
294 4
295 6
296 11
297 8
298 8
299 8
300 4
301 7
302 3
303 6
304 4
305 5
306 5
307 10
308 4
309 3
310 8
311 9
312 5
313 7
314 1
315 3
316 10
317 10
318 5
320 8
321 6
322 6
323 8
324 8
325 4
326 2
327 4
328 1
329 2
330 2
331 7
332 6
333 3
334 4
335 3
336 3
337 3
338 6
339 5
340 2
341 4
342 1
343 5
344 7
345 4
346 3
347 5
348 5
349 2
350 3
351 4
352 5
353 2
354 5
355 3
356 4
357 4
358 5
359 1
360 4
361 3
362 1
363 2
364 7
365 2
366 5
367 1
368 2
369 5
370 3
371 3
372 2
373 4
375 2
376 1
377 3
378 2
379 3
380 4
381 2
382 7
383 5
384 2
385 2
386 1
387 4
388 3
389 1
390 5
391 3
392 1
393 2
394 5
395 2
396 1
397 2
398 1
399 3
400 2
401 8
402 2
403 5
404 3
405 2
406 1
407 5
408 3
409 3
410 1
411 1
412 2
413 2
414 2
415 1
416 1
417 4
418 3
420 2
421 2
422 2
423 3
424 3
425 2
426 1
427 2
429 2
430 4
432 2
433 2
434 2
435 3
436 2
437 2
438 1
439 4
440 1
443 2
445 2
446 2
447 2
448 2
449 1
450 2
451 3
452 1
454 1
455 5
456 6
457 2
458 3
459 2
460 1
461 3
462 1
463 2
464 3
465 1
466 2
467 2
472 1
473 4
475 1
476 3
477 2
478 1
479 1
481 1
482 1
483 1
484 3
485 1
487 3
489 2
490 1
491 2
493 1
494 1
495 2
496 2
498 1
500 1
502 2
503 1
504 1
505 2
506 2
507 1
508 3
510 1
512 1
513 1
514 3
515 2
516 2
517 1
518 3
519 1
520 3
522 1
523 1
525 1
526 1
527 1
529 1
531 1
533 3
535 1
536 1
537 1
538 1
540 1
541 2
542 1
544 2
546 1
547 1
548 2
550 1
551 1
552 1
553 3
554 1
555 1
556 1
559 1
560 1
562 1
563 1
566 3
571 2
576 1
577 1
579 1
580 1
582 1
585 1
586 1
590 4
591 1
592 1
596 1
597 1
598 1
605 1
609 2
611 1
614 1
615 1
616 1
617 1
618 1
619 1
621 1
623 1
624 1
627 2
628 2
630 1
632 2
633 2
635 1
638 1
639 1
646 1
650 1
651 2
654 1
656 1
657 1
659 1
667 2
672 1
675 1
682 1
689 1
691 1
693 1
695 2
700 1
701 1
703 1
708 1
714 3
719 2
720 1
721 1
733 1
736 1
737 1
739 1
740 1
742 1
743 1
746 1
747 1
748 1
750 1
765 1
769 1
771 1
772 1
776 1
785 1
786 1
792 1
798 1
801 2
810 1
811 1
815 1
821 1
833 2
835 1
838 1
839 1
843 1
873 2
874 1
875 1
877 1
885 1
893 1
895 1
912 1
914 1
921 1
933 1
951 1
960 1
963 1
968 1
969 1
978 1
986 1
1001 1
1012 2
1018 1
1020 1
1035 1
1036 1
1037 1
1127 1
1128 1
1154 1
1168 1
1177 1
1180 1
1199 1
1228 1
1281 1
1286 1
1318 1
1353 1
1414 1
1444 1
1470 1
1553 1
1637 1
1673 1
1693 1
1760 1
2450 1
2471 1
3575 1
4245 1
15537 1
419842 1
[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
..._.._._..._._.._..........__.._...._.._....._._..............._..__...
..__...._.......____._._._...._._......_......._.....__.....
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]