File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/73aa08e7212b5cdf82cb2fab71eaa5/.command.log
Size
732 bytes
Task
NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION (GM24385_0001_RNA_0001_23H5VFLT4_s08)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/74d8fba78f5b95b076c4174fcd1c95/GM24385_0001_RNA_0001_23H5VFLT4_s08.features.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/73aa08e7212b5cdf82cb2fab71eaa5/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/73aa08e7212b5cdf82cb2fab71eaa5/.command.run
==> STAGING COMPLETE (3 inputs)

Predicting contamination for 1 sample(s)...
Detection threshold: VAF_p90 < 0.9999
Level estimation: contamination_pct = -215.87 * vaf_p90 + 215.65

  GM24385_0001_RNA_0001_23H5VFLT4_s08: vaf_p90=1.000000 -> CLEAN

Output saved to: GM24385_0001_RNA_0001_23H5VFLT4_s08.predictions.csv
Summary: 0/1 samples flagged as contaminated