Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/2397b408a8213734a173d8a752ccf8/tih_rna_sample_00097_23H5VFLT4_s12.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/2a1b6fb64dcc5129edc0c3333846d9/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/2a1b6fb64dcc5129edc0c3333846d9/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/d08e67d90729dde14e85deda2ab47c/tih_rna_sample_00097_23H5VFLT4_s12.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00097_23H5VFLT4_s12.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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