Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/f8df3fd8be85d652f52eb0a049ce6d/GM24385_0001_RNA_0001_23H5VFLT4_s40.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/9055d4b0da3d2fb2a1c6cf662c7616/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/9000cc06d7c0a7e38487183bc2dbc5/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/9000cc06d7c0a7e38487183bc2dbc5/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/c5cc515c34737032947922f164dbb6/GM24385_0001_RNA_0001_23H5VFLT4_s40.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 216840370
[W::hts_idx_load3] The index file is older than the data file: GM24385_0001_RNA_0001_23H5VFLT4_s40.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	216840370
Known Splicing Events:	214364472
Partial Novel Splicing Events:	1507053
Novel Splicing Events:	901249
Filtered Splicing Events:	67596

Total splicing  Junctions:	316747
Known Splicing Junctions:	198147
Partial Novel Splicing Junctions:	70631
Novel Splicing Junctions:	47969

===================================================================
Create BED file ...
Create Interact file ...