File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/213358cb942c3f711eb6a5d42335e7/.command.log
Size
1.5 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (GM24385_0001_RNA_0001_23H5VFLT4_s24)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-5b456d70-fab3-4fcc-916c-bc437f411fba/5f/4d32fc1f4ec7fe5ef236279e51ead4/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/213358cb942c3f711eb6a5d42335e7/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/213358cb942c3f711eb6a5d42335e7/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/e9ebbf15a3c6ec5adabe5b3fc1b488/GM24385_0001_RNA_0001_23H5VFLT4_s24.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/39cafb3b141cae6613480e773ef7d5/GM24385_0001_RNA_0001_23H5VFLT4_s24.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
STX16--NPEPL1
starfusion
arriba
TVP23C--CDRT4
arriba

  0%|          | 0/2 [00:00<?, ?it/s]
Processing STX16--NPEPL1:   0%|          | 0/2 [00:00<?, ?it/s]
Processing STX16--NPEPL1:  50%|█████     | 1/2 [00:00<00:00,  9.21it/s]
Processing TVP23C--CDRT4:  50%|█████     | 1/2 [00:00<00:00,  9.21it/s]
Processing TVP23C--CDRT4: 100%|██████████| 2/2 [00:00<00:00,  9.42it/s]
Processing TVP23C--CDRT4: 100%|██████████| 2/2 [00:00<00:00,  9.37it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory