Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/62b56d1ffa23c437a438f0b551b1ca/tih_rna_sample_00280_23H5VFLT4_s18.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/ae5e11b12a91e71cbd6ea6c7ae132f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/ae5e11b12a91e71cbd6ea6c7ae132f/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/c4820a8f8592e6cca1d6e649ecd8d4/tih_rna_sample_00280_23H5VFLT4_s18.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory