Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/3cb4f22162cfdd0018680c5b92b124/tih_rna_sample_00111_23H5VFLT4_s30.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/2c54f09f962bf24b1b329b7e626b70/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/2c54f09f962bf24b1b329b7e626b70/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/7d5554434fdfcaf847f88afb1e6254/tih_rna_sample_00111_23H5VFLT4_s30.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory