File Info

Filename
.command.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/1dcc102dd0fda88ec7bf3ba7b8b605/.command.out
Size
1.8 KB
Attempt
  AIH curated blacklist: matched 7 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 102
  Pass (FILTER=PASS): 17 (16.7%)
  Fail (FILTER=FAIL): 85 (83.3%)

AIH curated blacklist (blacklisted flag):
  Total blacklisted: 7
  All 7 blacklisted rows have FILTER=FAIL

Failure reasons (top 15):
  confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 22
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 21
  confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 8
  confidence_below_min(medium<high): 7
  confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 7
  confidence_below_min(medium<high);aih_curated_blacklist: 4
  confidence_below_min(low<high): 4
  confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 3
  confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 2
  confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 1
  confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 1
  total_reads_below_min(7.0<8.0);aih_curated_blacklist: 1
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0);aih_curated_blacklist: 1
  total_reads_below_min(5.0<8.0): 1
  confidence_below_min(medium<high);total_reads_below_min(6.0<8.0);aih_curated_blacklist: 1

Breakdown by confidence:
  high: 17 pass, 2 fail (total: 19)
  low: 0 pass, 62 fail (total: 62)
  medium: 0 pass, 21 fail (total: 21)
Arriba filter: 102 rows -> 17 PASS; wrote V4_0001_RNA_0005_23H5VFLT4_s34.arriba.fusions.filtered.tsv and V4_0001_RNA_0005_23H5VFLT4_s34.arriba.fusions.filtered_pass_only.tsv
Summary written to: V4_0001_RNA_0005_23H5VFLT4_s34.arriba.fusions.filter_summary.txt