.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (GM24385_0001_RNA_0001_23H5VFLT4_s32)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/d7a4344b2d5abe9493b272e04b6dc0/.command.log
Size: 1.3 KB
Task: NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (GM24385_0001_RNA_0001_23H5VFLT4_s32)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-5b456d70-fab3-4fcc-916c-bc437f411fba/5f/4d32fc1f4ec7fe5ef236279e51ead4/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/d7a4344b2d5abe9493b272e04b6dc0/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/d7a4344b2d5abe9493b272e04b6dc0/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/2b6695653b6a0df036a2b5c8696329/GM24385_0001_RNA_0001_23H5VFLT4_s32.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/687275df48451a78d2b9ef400bcd54/GM24385_0001_RNA_0001_23H5VFLT4_s32.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

[32mRunning application...[0m
TVP23C--CDRT4
arriba

  0%|          | 0/1 [00:00<?, ?it/s]
Processing TVP23C--CDRT4:   0%|          | 0/1 [00:00<?, ?it/s]
Processing TVP23C--CDRT4: 100%|██████████| 1/1 [00:00<00:00,  9.14it/s]
Processing TVP23C--CDRT4: 100%|██████████| 1/1 [00:00<00:00,  9.11it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory