Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/56ec62983513eda768681c05aa36b7/tih_rna_sample_00252_23H5VFLT4_s04.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/00df2577d5c1d13ec3458ee785f943/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/00df2577d5c1d13ec3458ee785f943/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory