Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/f8df3fd8be85d652f52eb0a049ce6d/GM24385_0001_RNA_0001_23H5VFLT4_s40.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/9d584c30c7986bc8151c35cadb1b33/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/9d584c30c7986bc8151c35cadb1b33/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 250159550
unpaired = 3116033
MERGED PAIRED END READS = 250159550
MATES PROCESSED = 503435133
TOTAL READS     = 253275583
DISTINCT READS  = 5.99532e+07
DISTINCT COUNTS = 921
MAX COUNT       = 490920
COUNTS OF 1     = 2.39056e+07
MAX TERMS       = 100
OBSERVED COUNTS (490921)
1	23905562
2	9429181
3	5262102
4	3813679
5	3079579
6	2561332
7	2126381
8	1751550
9	1435949
10	1166119
11	946667
12	763835
13	618042
14	501182
15	406181
16	329687
17	271051
18	222998
19	183586
20	153054
21	128208
22	107876
23	91736
24	78547
25	66690
26	57139
27	49855
28	43742
29	37787
30	33378
31	29493
32	25957
33	23378
34	20613
35	18343
36	16507
37	14839
38	13240
39	12071
40	10899
41	9805
42	8898
43	8001
44	7249
45	6670
46	6080
47	5647
48	5052
49	4670
50	4403
51	3933
52	3627
53	3522
54	3090
55	2930
56	2729
57	2574
58	2347
59	2174
60	2106
61	1939
62	1855
63	1744
64	1604
65	1549
66	1455
67	1343
68	1306
69	1226
70	1154
71	1139
72	1054
73	962
74	911
75	904
76	867
77	862
78	780
79	711
80	715
81	683
82	650
83	656
84	601
85	588
86	593
87	484
88	515
89	476
90	490
91	474
92	450
93	430
94	376
95	443
96	351
97	401
98	335
99	339
100	337
101	331
102	309
103	321
104	278
105	284
106	307
107	253
108	269
109	215
110	229
111	237
112	221
113	216
114	229
115	215
116	223
117	212
118	182
119	160
120	179
121	156
122	172
123	170
124	136
125	157
126	141
127	174
128	150
129	132
130	165
131	155
132	127
133	146
134	125
135	131
136	113
137	116
138	119
139	117
140	129
141	104
142	117
143	100
144	97
145	101
146	85
147	110
148	101
149	103
150	104
151	106
152	94
153	86
154	81
155	92
156	76
157	88
158	86
159	66
160	69
161	79
162	69
163	84
164	82
165	76
166	68
167	60
168	76
169	58
170	53
171	61
172	61
173	51
174	57
175	55
176	57
177	71
178	52
179	58
180	63
181	60
182	51
183	68
184	61
185	49
186	54
187	46
188	44
189	56
190	45
191	48
192	39
193	33
194	42
195	45
196	43
197	40
198	45
199	44
200	42
201	28
202	40
203	32
204	36
205	47
206	33
207	42
208	33
209	31
210	33
211	29
212	36
213	42
214	35
215	30
216	31
217	31
218	28
219	30
220	28
221	28
222	28
223	26
224	22
225	26
226	26
227	26
228	29
229	28
230	32
231	29
232	18
233	32
234	32
235	19
236	31
237	23
238	28
239	19
240	35
241	25
242	21
243	20
244	17
245	27
246	15
247	18
248	26
249	18
250	24
251	21
252	19
253	12
254	24
255	25
256	27
257	25
258	20
259	13
260	18
261	19
262	18
263	25
264	22
265	12
266	21
267	18
268	16
269	14
270	11
271	23
272	10
273	11
274	11
275	17
276	21
277	15
278	12
279	12
280	19
281	14
282	11
283	4
284	13
285	19
286	16
287	19
288	19
289	11
290	15
291	12
292	13
293	17
294	6
295	13
296	14
297	8
298	11
299	7
300	7
301	15
302	17
303	7
304	16
305	8
306	17
307	15
308	14
309	7
310	14
311	10
312	12
313	15
314	9
315	8
316	2
317	12
318	10
319	8
320	7
321	9
322	12
323	11
324	13
325	6
326	10
327	8
328	11
329	7
330	8
331	11
332	1
333	10
334	6
335	4
336	8
337	3
338	14
339	7
340	7
341	6
342	5
343	3
344	6
345	8
346	13
347	7
348	8
349	6
350	11
351	5
352	4
353	9
354	7
355	5
356	14
357	5
358	9
359	9
360	6
361	8
362	5
363	9
364	8
365	7
366	10
367	8
368	3
369	7
370	4
371	4
372	11
373	3
374	5
375	5
376	5
377	7
378	6
379	9
380	3
381	3
382	6
383	7
384	3
385	6
386	6
387	10
388	6
389	6
390	2
391	2
392	9
393	4
394	8
395	1
396	5
397	5
398	5
399	10
400	5
401	4
402	9
403	7
404	4
405	6
406	6
407	3
408	2
409	6
410	6
411	2
412	6
413	6
414	6
415	3
416	8
417	5
418	5
419	3
420	5
421	6
422	1
423	6
424	2
425	5
426	5
427	4
428	4
429	7
430	8
431	6
432	8
433	2
434	8
435	6
436	4
437	6
438	6
439	3
440	4
441	6
442	7
443	4
444	2
445	4
446	7
447	3
448	2
449	4
450	8
451	9
452	2
453	2
454	3
455	2
456	2
457	5
458	7
459	4
460	5
461	4
462	1
463	1
464	2
465	10
466	5
467	5
468	3
469	4
470	6
471	2
472	2
473	2
474	3
475	2
476	3
477	3
478	3
479	5
480	5
481	1
482	4
483	1
484	4
485	2
486	2
487	2
488	3
489	3
490	2
492	5
493	6
494	3
496	5
497	2
498	1
499	5
500	6
501	5
502	1
504	5
506	4
507	3
508	7
509	1
510	2
511	3
512	1
513	3
514	5
515	2
516	3
517	3
518	5
519	6
520	1
521	2
522	2
524	5
525	3
526	1
527	3
528	2
529	4
530	3
531	2
532	1
533	5
534	4
535	2
536	1
537	1
538	4
539	2
540	1
541	1
542	5
543	1
544	4
546	1
548	2
549	1
550	3
552	3
553	1
554	1
555	2
556	1
557	3
558	1
559	4
560	1
561	5
562	2
563	2
564	1
565	3
566	2
567	1
568	1
569	4
570	2
571	2
573	3
575	1
576	4
577	2
578	1
580	1
581	2
583	2
584	5
588	3
589	1
590	1
591	2
594	2
595	2
596	2
597	2
598	1
599	1
600	2
601	3
602	5
604	5
605	3
606	1
607	1
608	1
609	1
610	1
611	1
612	2
613	2
614	1
615	1
616	3
618	2
619	4
620	3
621	5
622	1
623	3
624	1
625	1
626	4
627	4
628	2
629	2
630	1
631	3
632	1
633	2
634	3
637	3
638	2
639	2
640	2
641	2
642	1
643	1
644	2
645	2
646	2
647	2
648	4
649	1
651	2
652	2
653	4
654	2
655	5
656	2
658	3
661	2
663	1
666	1
669	1
673	1
676	2
677	1
679	1
681	1
682	1
683	1
685	1
686	1
687	1
688	2
689	1
693	1
694	2
695	2
696	1
698	2
699	1
701	3
702	1
703	2
704	2
705	1
706	1
708	2
709	2
710	3
711	1
712	1
714	2
718	3
720	2
721	2
722	3
725	1
726	1
727	1
728	5
730	2
732	2
734	1
736	1
737	1
738	2
739	2
740	1
742	1
743	3
744	1
747	3
748	3
755	1
756	1
757	2
759	1
760	2
762	1
763	1
764	2
765	2
766	2
768	2
769	1
771	2
773	2
775	1
778	1
779	1
780	1
781	1
784	4
786	1
788	1
790	1
791	1
796	1
797	2
799	4
800	2
801	2
802	1
803	1
805	1
807	1
809	2
812	1
813	1
817	1
820	1
821	1
825	1
826	1
827	3
829	1
830	2
831	3
834	2
835	1
836	1
840	1
842	1
844	1
845	1
849	1
850	1
859	2
862	1
865	1
867	2
868	2
869	1
871	1
872	1
873	1
874	1
876	1
878	1
882	1
886	1
891	1
893	1
894	1
895	2
896	1
905	2
907	1
909	1
918	1
919	1
921	3
925	1
927	1
933	1
935	2
938	1
939	2
941	2
942	1
945	1
947	2
951	2
953	1
956	1
957	1
960	2
962	1
964	2
966	1
968	1
973	1
979	1
981	1
983	1
990	1
993	1
994	1
995	1
1001	1
1003	1
1009	2
1011	2
1012	1
1019	1
1026	1
1027	1
1029	1
1030	1
1031	2
1038	1
1039	1
1040	2
1044	1
1045	1
1047	1
1057	1
1065	1
1075	1
1076	2
1077	1
1079	1
1082	1
1086	1
1087	1
1091	1
1092	2
1095	1
1096	1
1099	1
1107	1
1120	1
1121	1
1123	1
1124	1
1136	1
1150	1
1158	1
1164	1
1167	1
1169	1
1171	1
1174	1
1184	1
1188	1
1206	1
1210	1
1235	1
1236	1
1249	1
1251	2
1252	1
1266	1
1267	1
1269	1
1280	2
1288	1
1297	1
1298	1
1319	2
1338	1
1344	1
1345	1
1368	1
1370	1
1373	1
1384	1
1385	1
1404	1
1428	1
1437	1
1439	1
1450	1
1483	1
1510	1
1514	1
1518	1
1536	1
1548	1
1554	1
1565	1
1568	1
1579	1
1586	1
1588	2
1599	1
1600	1
1650	1
1662	3
1664	1
1669	1
1673	1
1679	2
1760	1
1766	1
1767	1
1771	1
1800	1
1830	1
1839	1
1857	1
1910	1
1940	1
2077	1
2129	1
2142	1
2183	1
2196	1
2316	1
2361	1
2506	1
2847	1
2888	1
3041	1
3579	1
3786	1
4084	1
4102	1
4680	1
4977	1
5630	1
9249	1
23683	1
490920	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
......_.............._......._._......................_...._............
......_............._......_.._._......
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]