.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:SAMTOOLS_VIEW_ALIGNMENT_CRAM (tih_rna_sample_00248_23H5VFLT4_s01)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/c66f9efe96cbd6c3778badd3dfb07c/.command.log
Size: 829 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:SAMTOOLS_VIEW_ALIGNMENT_CRAM (tih_rna_sample_00248_23H5VFLT4_s01)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/8ef82f2ae2964e7035f65428e0d9b5/tih_rna_sample_00248_23H5VFLT4_s01.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/c66f9efe96cbd6c3778badd3dfb07c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/c66f9efe96cbd6c3778badd3dfb07c/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/3af9e94ee8ab04555e1912cb27912e/tih_rna_sample_00248_23H5VFLT4_s01.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory