Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/ff3e030005ca86f5a4f44604fc0019/tih_rna_sample_00117_23H5VFLT4_s37.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-5b456d70-fab3-4fcc-916c-bc437f411fba/5f/4d32fc1f4ec7fe5ef236279e51ead4/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/b2103c6510167a875f1602c2595a92/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/b2103c6510167a875f1602c2595a92/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/951fb1248a8396979dfa555b3741b8/tih_rna_sample_00117_23H5VFLT4_s37.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
FSIP1--AC013652.1
starfusion
arriba
COL1A1--SLC45A4
starfusion
PCDHGA4--PCDHGC4
arriba
PCDHGA4--PCDHGC3
arriba
PCDHGA4--PCDHGC5
arriba
PCDHGA4--PCDHGA8
arriba
PCDHGA4--PCDHGB6
arriba
PCDHGA4--PCDHGA10
arriba
PCDHGA4--PCDHGA11
arriba
PCDHGA4--PCDHGA12
arriba
PCDHGA4--PCDHGB7
arriba
PCDHGA4--PCDHGA9
arriba
RBM14--RBM4B
arriba
PCDHA6--PCDHAC1
arriba
PCDHA6--PCDHAC2
arriba
PCDHA6--PCDHA13
arriba

  0%|          | 0/16 [00:00<?, ?it/s]
Processing FSIP1--AC013652.1:   0%|          | 0/16 [00:00<?, ?it/s]
Processing FSIP1--AC013652.1:   6%|▋         | 1/16 [00:00<00:01,  9.14it/s]
Processing COL1A1--SLC45A4:   6%|▋         | 1/16 [00:00<00:01,  9.14it/s]  
Processing COL1A1--SLC45A4:  12%|█▎        | 2/16 [00:00<00:01,  9.38it/s]
Processing PCDHGA4--PCDHGC4:  12%|█▎        | 2/16 [00:00<00:01,  9.38it/s]
Processing PCDHGA4--PCDHGC4:  19%|█▉        | 3/16 [00:00<00:01,  9.46it/s]
Processing PCDHGA4--PCDHGC3:  19%|█▉        | 3/16 [00:00<00:01,  9.46it/s]
Processing PCDHGA4--PCDHGC3:  25%|██▌       | 4/16 [00:00<00:01,  9.50it/s]
Processing PCDHGA4--PCDHGC5:  25%|██▌       | 4/16 [00:00<00:01,  9.50it/s]
Processing PCDHGA4--PCDHGC5:  31%|███▏      | 5/16 [00:00<00:01,  9.52it/s]
Processing PCDHGA4--PCDHGA8:  31%|███▏      | 5/16 [00:00<00:01,  9.52it/s]
Processing PCDHGA4--PCDHGA8:  38%|███▊      | 6/16 [00:00<00:01,  9.53it/s]
Processing PCDHGA4--PCDHGB6:  38%|███▊      | 6/16 [00:00<00:01,  9.53it/s]
Processing PCDHGA4--PCDHGB6:  44%|████▍     | 7/16 [00:00<00:00,  9.55it/s]
Processing PCDHGA4--PCDHGA10:  44%|████▍     | 7/16 [00:00<00:00,  9.55it/s]
Processing PCDHGA4--PCDHGA10:  50%|█████     | 8/16 [00:00<00:00,  9.55it/s]
Processing PCDHGA4--PCDHGA11:  50%|█████     | 8/16 [00:00<00:00,  9.55it/s]
Processing PCDHGA4--PCDHGA11:  56%|█████▋    | 9/16 [00:00<00:00,  9.56it/s]
Processing PCDHGA4--PCDHGA12:  56%|█████▋    | 9/16 [00:00<00:00,  9.56it/s]
Processing PCDHGA4--PCDHGA12:  62%|██████▎   | 10/16 [00:01<00:00,  9.56it/s]
Processing PCDHGA4--PCDHGB7:  62%|██████▎   | 10/16 [00:01<00:00,  9.56it/s] 
Processing PCDHGA4--PCDHGB7:  69%|██████▉   | 11/16 [00:01<00:00,  9.56it/s]
Processing PCDHGA4--PCDHGA9:  69%|██████▉   | 11/16 [00:01<00:00,  9.56it/s]
Processing PCDHGA4--PCDHGA9:  75%|███████▌  | 12/16 [00:01<00:00,  9.57it/s]
Processing RBM14--RBM4B:  75%|███████▌  | 12/16 [00:01<00:00,  9.57it/s]    
Processing RBM14--RBM4B:  81%|████████▏ | 13/16 [00:01<00:00,  9.56it/s]
Processing PCDHA6--PCDHAC1:  81%|████████▏ | 13/16 [00:01<00:00,  9.56it/s]
Processing PCDHA6--PCDHAC1:  88%|████████▊ | 14/16 [00:01<00:00,  9.56it/s]
Processing PCDHA6--PCDHAC2:  88%|████████▊ | 14/16 [00:01<00:00,  9.56it/s]
Processing PCDHA6--PCDHAC2:  94%|█████████▍| 15/16 [00:01<00:00,  9.57it/s]
Processing PCDHA6--PCDHA13:  94%|█████████▍| 15/16 [00:01<00:00,  9.57it/s]
Processing PCDHA6--PCDHA13: 100%|██████████| 16/16 [00:01<00:00,  9.57it/s]
Processing PCDHA6--PCDHA13: 100%|██████████| 16/16 [00:01<00:00,  9.54it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory