Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/3cb4f22162cfdd0018680c5b92b124/tih_rna_sample_00111_23H5VFLT4_s30.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/9055d4b0da3d2fb2a1c6cf662c7616/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/6ccf4113d0c686720dec5439f84c47/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/6ccf4113d0c686720dec5439f84c47/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/7d5554434fdfcaf847f88afb1e6254/tih_rna_sample_00111_23H5VFLT4_s30.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 122327911
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00111_23H5VFLT4_s30.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	122327911
Known Splicing Events:	120712216
Partial Novel Splicing Events:	993063
Novel Splicing Events:	558427
Filtered Splicing Events:	64205

Total splicing  Junctions:	309591
Known Splicing Junctions:	211283
Partial Novel Splicing Junctions:	52598
Novel Splicing Junctions:	45710

===================================================================
Create BED file ...
Create Interact file ...