.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_INNERDISTANCE (tih_rna_sample_00115_23H5VFLT4_s35)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/fa5df8572f50d121d3752979dd7b22/.command.log
Size: 923 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_INNERDISTANCE (tih_rna_sample_00115_23H5VFLT4_s35)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/fa5df8572f50d121d3752979dd7b22/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/9055d4b0da3d2fb2a1c6cf662c7616/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/fa5df8572f50d121d3752979dd7b22/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/7cd2061c1c16e215b06cb192370845/tih_rna_sample_00115_23H5VFLT4_s35.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/da47d93bf4d914f2e2abc11162b7d0/tih_rna_sample_00115_23H5VFLT4_s35.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00115_23H5VFLT4_s35.Aligned.sortedByCoord.out.bam.bai
Get exon regions from ref_annot.bed ...
Load BAM file ...  Total read pairs  used 1000000