Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT GM24385_0001_RNA_0001_23H5VFLT4_s32.Aligned.sortedByCoord.out.bam --OUTPUT GM24385_0001_RNA_0001_23H5VFLT4_s32.md.bam --METRICS_FILE GM24385_0001_RNA_0001_23H5VFLT4_s32.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:10:29.476 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:10:29 GMT 2026] MarkDuplicates --INPUT GM24385_0001_RNA_0001_23H5VFLT4_s32.Aligned.sortedByCoord.out.bam --OUTPUT GM24385_0001_RNA_0001_23H5VFLT4_s32.md.bam --METRICS_FILE GM24385_0001_RNA_0001_23H5VFLT4_s32.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:10:29 GMT 2026] Executing as ?@nf-102b1613fd25c028ed511af70ba39c6e-bf626-p2w26 on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:10:29 MarkDuplicates Start of doWork freeMemory: 105491632; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:10:29 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:10:29 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:10:34 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 3s. Last read position: chr1:1,312,272
INFO 2026-06-08 08:10:34 MarkDuplicates Tracking 1959 as yet unmatched pairs. 488 records in RAM.
INFO 2026-06-08 08:10:36 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:2,402,007
INFO 2026-06-08 08:10:36 MarkDuplicates Tracking 3351 as yet unmatched pairs. 312 records in RAM.
INFO 2026-06-08 08:10:38 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 2s. Last read position: chr1:8,361,118
INFO 2026-06-08 08:10:38 MarkDuplicates Tracking 4699 as yet unmatched pairs. 235 records in RAM.
INFO 2026-06-08 08:10:40 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 1s. Last read position: chr1:11,192,263
INFO 2026-06-08 08:10:40 MarkDuplicates Tracking 5692 as yet unmatched pairs. 134 records in RAM.
INFO 2026-06-08 08:10:42 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 1s. Last read position: chr1:15,729,159
INFO 2026-06-08 08:10:42 MarkDuplicates Tracking 7191 as yet unmatched pairs. 263 records in RAM.
INFO 2026-06-08 08:10:44 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 1s. Last read position: chr1:19,112,658
INFO 2026-06-08 08:10:44 MarkDuplicates Tracking 8218 as yet unmatched pairs. 255 records in RAM.
INFO 2026-06-08 08:10:47 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 2s. Last read position: chr1:21,745,630
INFO 2026-06-08 08:10:47 MarkDuplicates Tracking 9103 as yet unmatched pairs. 156 records in RAM.
INFO 2026-06-08 08:10:49 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 2s. Last read position: chr1:24,930,634
INFO 2026-06-08 08:10:49 MarkDuplicates Tracking 10181 as yet unmatched pairs. 24 records in RAM.
INFO 2026-06-08 08:10:51 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 1s. Last read position: chr1:27,333,843
INFO 2026-06-08 08:10:51 MarkDuplicates Tracking 11691 as yet unmatched pairs. 267 records in RAM.
INFO 2026-06-08 08:10:53 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 1s. Last read position: chr1:29,148,442
INFO 2026-06-08 08:10:53 MarkDuplicates Tracking 13029 as yet unmatched pairs. 419 records in RAM.
INFO 2026-06-08 08:10:55 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 2s. Last read position: chr1:32,364,062
INFO 2026-06-08 08:10:55 MarkDuplicates Tracking 13880 as yet unmatched pairs. 170 records in RAM.
INFO 2026-06-08 08:10:57 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 2s. Last read position: chr1:35,636,339
INFO 2026-06-08 08:10:57 MarkDuplicates Tracking 15129 as yet unmatched pairs. 166 records in RAM.
INFO 2026-06-08 08:10:59 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 1s. Last read position: chr1:39,357,653
INFO 2026-06-08 08:10:59 MarkDuplicates Tracking 16742 as yet unmatched pairs. 633 records in RAM.
INFO 2026-06-08 08:11:01 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 2s. Last read position: chr1:41,510,889
INFO 2026-06-08 08:11:01 MarkDuplicates Tracking 17624 as yet unmatched pairs. 404 records in RAM.
INFO 2026-06-08 08:11:03 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 1s. Last read position: chr1:44,754,797
INFO 2026-06-08 08:11:03 MarkDuplicates Tracking 18394 as yet unmatched pairs. 134 records in RAM.
INFO 2026-06-08 08:11:05 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 1s. Last read position: chr1:47,373,059
INFO 2026-06-08 08:11:05 MarkDuplicates Tracking 19549 as yet unmatched pairs. 76 records in RAM.
INFO 2026-06-08 08:11:07 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 2s. Last read position: chr1:54,257,146
INFO 2026-06-08 08:11:07 MarkDuplicates Tracking 20481 as yet unmatched pairs. 95 records in RAM.
INFO 2026-06-08 08:11:08 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:74,746,381
INFO 2026-06-08 08:11:08 MarkDuplicates Tracking 21321 as yet unmatched pairs. 71 records in RAM.
INFO 2026-06-08 08:11:10 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:86,915,004
INFO 2026-06-08 08:11:10 MarkDuplicates Tracking 22238 as yet unmatched pairs. 183 records in RAM.
INFO 2026-06-08 08:11:12 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 1s. Last read position: chr1:100,136,881
INFO 2026-06-08 08:11:12 MarkDuplicates Tracking 23143 as yet unmatched pairs. 138 records in RAM.
INFO 2026-06-08 08:11:15 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 2s. Last read position: chr1:110,949,828
INFO 2026-06-08 08:11:15 MarkDuplicates Tracking 24233 as yet unmatched pairs. 142 records in RAM.
INFO 2026-06-08 08:11:16 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:114,405,567
INFO 2026-06-08 08:11:16 MarkDuplicates Tracking 25851 as yet unmatched pairs. 762 records in RAM.
INFO 2026-06-08 08:11:18 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 1s. Last read position: chr1:119,967,496
INFO 2026-06-08 08:11:18 MarkDuplicates Tracking 26179 as yet unmatched pairs. 11 records in RAM.
INFO 2026-06-08 08:11:20 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:146,376,823
INFO 2026-06-08 08:11:20 MarkDuplicates Tracking 26673 as yet unmatched pairs. 16 records in RAM.
INFO 2026-06-08 08:11:21 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:149,841,054
INFO 2026-06-08 08:11:21 MarkDuplicates Tracking 27299 as yet unmatched pairs. 28 records in RAM.
INFO 2026-06-08 08:11:23 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:150,622,672
INFO 2026-06-08 08:11:23 MarkDuplicates Tracking 29472 as yet unmatched pairs. 1297 records in RAM.
INFO 2026-06-08 08:11:24 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:153,668,057
INFO 2026-06-08 08:11:24 MarkDuplicates Tracking 29409 as yet unmatched pairs. 283 records in RAM.
INFO 2026-06-08 08:11:26 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:154,176,115
INFO 2026-06-08 08:11:26 MarkDuplicates Tracking 31371 as yet unmatched pairs. 1305 records in RAM.
INFO 2026-06-08 08:11:28 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:154,975,270
INFO 2026-06-08 08:11:28 MarkDuplicates Tracking 31321 as yet unmatched pairs. 237 records in RAM.
INFO 2026-06-08 08:11:29 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:155,766,388
INFO 2026-06-08 08:11:29 MarkDuplicates Tracking 32491 as yet unmatched pairs. 267 records in RAM.
INFO 2026-06-08 08:11:31 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:156,595,234
INFO 2026-06-08 08:11:31 MarkDuplicates Tracking 33581 as yet unmatched pairs. 5 records in RAM.
INFO 2026-06-08 08:11:33 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:160,544,901
INFO 2026-06-08 08:11:33 MarkDuplicates Tracking 34474 as yet unmatched pairs. 17 records in RAM.
INFO 2026-06-08 08:11:35 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 2s. Last read position: chr1:161,606,177
INFO 2026-06-08 08:11:35 MarkDuplicates Tracking 35550 as yet unmatched pairs. 202 records in RAM.
INFO 2026-06-08 08:11:38 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 2s. Last read position: chr1:171,488,063
INFO 2026-06-08 08:11:38 MarkDuplicates Tracking 36323 as yet unmatched pairs. 51 records in RAM.
INFO 2026-06-08 08:11:40 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 2s. Last read position: chr1:176,206,827
INFO 2026-06-08 08:11:40 MarkDuplicates Tracking 37617 as yet unmatched pairs. 480 records in RAM.
INFO 2026-06-08 08:11:41 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:183,648,605
INFO 2026-06-08 08:11:41 MarkDuplicates Tracking 38321 as yet unmatched pairs. 34 records in RAM.
INFO 2026-06-08 08:11:43 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:197,146,174
INFO 2026-06-08 08:11:43 MarkDuplicates Tracking 39494 as yet unmatched pairs. 348 records in RAM.
INFO 2026-06-08 08:11:44 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:203,800,079
INFO 2026-06-08 08:11:44 MarkDuplicates Tracking 40677 as yet unmatched pairs. 529 records in RAM.
INFO 2026-06-08 08:11:46 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:206,903,601
INFO 2026-06-08 08:11:46 MarkDuplicates Tracking 41390 as yet unmatched pairs. 154 records in RAM.
INFO 2026-06-08 08:11:48 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:219,835,071
INFO 2026-06-08 08:11:48 MarkDuplicates Tracking 42143 as yet unmatched pairs. 5 records in RAM.
INFO 2026-06-08 08:11:49 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:226,385,575
INFO 2026-06-08 08:11:49 MarkDuplicates Tracking 43144 as yet unmatched pairs. 133 records in RAM.
INFO 2026-06-08 08:11:51 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:230,274,547
INFO 2026-06-08 08:11:51 MarkDuplicates Tracking 44727 as yet unmatched pairs. 232 records in RAM.
INFO 2026-06-08 08:11:53 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:236,795,659
INFO 2026-06-08 08:11:53 MarkDuplicates Tracking 46298 as yet unmatched pairs. 354 records in RAM.
INFO 2026-06-08 08:11:54 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:248,850,464
INFO 2026-06-08 08:11:54 MarkDuplicates Tracking 47113 as yet unmatched pairs. 265 records in RAM.
INFO 2026-06-08 08:11:56 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr2:11,453,688
INFO 2026-06-08 08:11:56 MarkDuplicates Tracking 48169 as yet unmatched pairs. 47503 records in RAM.
INFO 2026-06-08 08:11:58 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr2:24,739,440
INFO 2026-06-08 08:11:58 MarkDuplicates Tracking 49501 as yet unmatched pairs. 48768 records in RAM.
INFO 2026-06-08 08:12:00 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr2:27,343,310
INFO 2026-06-08 08:12:00 MarkDuplicates Tracking 50478 as yet unmatched pairs. 49735 records in RAM.
INFO 2026-06-08 08:12:02 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr2:32,482,426
INFO 2026-06-08 08:12:02 MarkDuplicates Tracking 51409 as yet unmatched pairs. 50658 records in RAM.
INFO 2026-06-08 08:12:03 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:12:03 MarkDuplicates Tracking 319901 as yet unmatched pairs. 35761 records in RAM.
INFO 2026-06-08 08:12:05 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:12:05 MarkDuplicates Tracking 501452 as yet unmatched pairs. 25963 records in RAM.
INFO 2026-06-08 08:12:06 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr2:38,343,501
INFO 2026-06-08 08:12:06 MarkDuplicates Tracking 535653 as yet unmatched pairs. 23422 records in RAM.
INFO 2026-06-08 08:12:07 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr2:44,603,325
INFO 2026-06-08 08:12:07 MarkDuplicates Tracking 534577 as yet unmatched pairs. 22336 records in RAM.
INFO 2026-06-08 08:12:10 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 2s. Last read position: chr2:54,648,985
INFO 2026-06-08 08:12:10 MarkDuplicates Tracking 534591 as yet unmatched pairs. 22340 records in RAM.
INFO 2026-06-08 08:12:11 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr2:61,188,961
INFO 2026-06-08 08:12:11 MarkDuplicates Tracking 532997 as yet unmatched pairs. 20730 records in RAM.
INFO 2026-06-08 08:12:13 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr2:65,253,764
INFO 2026-06-08 08:12:13 MarkDuplicates Tracking 532572 as yet unmatched pairs. 20291 records in RAM.
INFO 2026-06-08 08:12:14 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr2:73,266,525
INFO 2026-06-08 08:12:14 MarkDuplicates Tracking 530972 as yet unmatched pairs. 18686 records in RAM.
INFO 2026-06-08 08:12:16 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr2:74,529,340
INFO 2026-06-08 08:12:16 MarkDuplicates Tracking 530330 as yet unmatched pairs. 18042 records in RAM.
INFO 2026-06-08 08:12:17 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr2:87,043,745
INFO 2026-06-08 08:12:17 MarkDuplicates Tracking 528923 as yet unmatched pairs. 16622 records in RAM.
INFO 2026-06-08 08:12:19 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr2:96,498,225
INFO 2026-06-08 08:12:19 MarkDuplicates Tracking 527438 as yet unmatched pairs. 15125 records in RAM.
INFO 2026-06-08 08:12:21 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 2s. Last read position: chr2:101,253,089
INFO 2026-06-08 08:12:21 MarkDuplicates Tracking 526797 as yet unmatched pairs. 14467 records in RAM.
INFO 2026-06-08 08:12:22 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr2:110,661,650
INFO 2026-06-08 08:12:22 MarkDuplicates Tracking 525970 as yet unmatched pairs. 13630 records in RAM.
INFO 2026-06-08 08:12:24 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr2:121,365,198
INFO 2026-06-08 08:12:24 MarkDuplicates Tracking 525204 as yet unmatched pairs. 12858 records in RAM.
INFO 2026-06-08 08:12:26 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr2:134,254,412
INFO 2026-06-08 08:12:26 MarkDuplicates Tracking 523874 as yet unmatched pairs. 11501 records in RAM.
INFO 2026-06-08 08:12:28 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr2:151,870,566
INFO 2026-06-08 08:12:28 MarkDuplicates Tracking 523147 as yet unmatched pairs. 10761 records in RAM.
INFO 2026-06-08 08:12:29 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr2:169,604,043
INFO 2026-06-08 08:12:29 MarkDuplicates Tracking 522293 as yet unmatched pairs. 9889 records in RAM.
INFO 2026-06-08 08:12:31 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 1s. Last read position: chr2:177,212,758
INFO 2026-06-08 08:12:31 MarkDuplicates Tracking 521403 as yet unmatched pairs. 8984 records in RAM.
INFO 2026-06-08 08:12:32 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:181,482,560
INFO 2026-06-08 08:12:32 MarkDuplicates Tracking 520782 as yet unmatched pairs. 8355 records in RAM.
INFO 2026-06-08 08:12:34 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr2:190,984,349
INFO 2026-06-08 08:12:34 MarkDuplicates Tracking 520403 as yet unmatched pairs. 7958 records in RAM.
INFO 2026-06-08 08:12:35 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr2:200,935,699
INFO 2026-06-08 08:12:35 MarkDuplicates Tracking 518817 as yet unmatched pairs. 6363 records in RAM.
INFO 2026-06-08 08:12:37 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr2:210,015,913
INFO 2026-06-08 08:12:37 MarkDuplicates Tracking 518279 as yet unmatched pairs. 5814 records in RAM.
INFO 2026-06-08 08:12:39 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:218,664,421
INFO 2026-06-08 08:12:39 MarkDuplicates Tracking 517088 as yet unmatched pairs. 4600 records in RAM.
INFO 2026-06-08 08:12:40 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr2:226,797,602
INFO 2026-06-08 08:12:40 MarkDuplicates Tracking 515970 as yet unmatched pairs. 3433 records in RAM.
INFO 2026-06-08 08:12:42 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr2:231,455,501
INFO 2026-06-08 08:12:42 MarkDuplicates Tracking 515058 as yet unmatched pairs. 2510 records in RAM.
INFO 2026-06-08 08:12:44 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr2:237,749,214
INFO 2026-06-08 08:12:44 MarkDuplicates Tracking 514210 as yet unmatched pairs. 1658 records in RAM.
INFO 2026-06-08 08:12:45 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:241,559,463
INFO 2026-06-08 08:12:45 MarkDuplicates Tracking 512793 as yet unmatched pairs. 229 records in RAM.
INFO 2026-06-08 08:12:47 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr3:9,434,385
INFO 2026-06-08 08:12:47 MarkDuplicates Tracking 511494 as yet unmatched pairs. 23505 records in RAM.
INFO 2026-06-08 08:12:48 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr3:12,618,549
INFO 2026-06-08 08:12:48 MarkDuplicates Tracking 512249 as yet unmatched pairs. 24236 records in RAM.
INFO 2026-06-08 08:12:50 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr3:15,738,543
INFO 2026-06-08 08:12:50 MarkDuplicates Tracking 511935 as yet unmatched pairs. 23913 records in RAM.
INFO 2026-06-08 08:12:51 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr3:23,208,699
INFO 2026-06-08 08:12:51 MarkDuplicates Tracking 508931 as yet unmatched pairs. 20903 records in RAM.
INFO 2026-06-08 08:12:53 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr3:36,846,372
INFO 2026-06-08 08:12:53 MarkDuplicates Tracking 507890 as yet unmatched pairs. 19846 records in RAM.
INFO 2026-06-08 08:12:54 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr3:41,233,577
INFO 2026-06-08 08:12:54 MarkDuplicates Tracking 507241 as yet unmatched pairs. 19195 records in RAM.
INFO 2026-06-08 08:12:56 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr3:46,998,945
INFO 2026-06-08 08:12:56 MarkDuplicates Tracking 506478 as yet unmatched pairs. 18416 records in RAM.
INFO 2026-06-08 08:12:58 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr3:47,912,304
INFO 2026-06-08 08:12:58 MarkDuplicates Tracking 504850 as yet unmatched pairs. 16782 records in RAM.
INFO 2026-06-08 08:12:59 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr3:49,076,942
INFO 2026-06-08 08:12:59 MarkDuplicates Tracking 503693 as yet unmatched pairs. 15623 records in RAM.
INFO 2026-06-08 08:13:01 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr3:50,059,668
INFO 2026-06-08 08:13:01 MarkDuplicates Tracking 502603 as yet unmatched pairs. 14531 records in RAM.
INFO 2026-06-08 08:13:03 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 2s. Last read position: chr3:52,248,367
INFO 2026-06-08 08:13:03 MarkDuplicates Tracking 501227 as yet unmatched pairs. 13149 records in RAM.
INFO 2026-06-08 08:13:05 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr3:56,641,591
INFO 2026-06-08 08:13:05 MarkDuplicates Tracking 500159 as yet unmatched pairs. 12073 records in RAM.
INFO 2026-06-08 08:13:06 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr3:75,214,532
INFO 2026-06-08 08:13:06 MarkDuplicates Tracking 499181 as yet unmatched pairs. 11083 records in RAM.
INFO 2026-06-08 08:13:08 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr3:105,702,333
INFO 2026-06-08 08:13:08 MarkDuplicates Tracking 498299 as yet unmatched pairs. 10185 records in RAM.
INFO 2026-06-08 08:13:10 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr3:120,348,744
INFO 2026-06-08 08:13:10 MarkDuplicates Tracking 497856 as yet unmatched pairs. 9739 records in RAM.
INFO 2026-06-08 08:13:12 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr3:122,727,795
INFO 2026-06-08 08:13:12 MarkDuplicates Tracking 496772 as yet unmatched pairs. 8630 records in RAM.
INFO 2026-06-08 08:13:13 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr3:129,130,162
INFO 2026-06-08 08:13:13 MarkDuplicates Tracking 495351 as yet unmatched pairs. 7202 records in RAM.
INFO 2026-06-08 08:13:15 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr3:135,050,750
INFO 2026-06-08 08:13:15 MarkDuplicates Tracking 494498 as yet unmatched pairs. 6333 records in RAM.
INFO 2026-06-08 08:13:16 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr3:149,046,153
INFO 2026-06-08 08:13:16 MarkDuplicates Tracking 493432 as yet unmatched pairs. 5260 records in RAM.
INFO 2026-06-08 08:13:18 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr3:160,401,996
INFO 2026-06-08 08:13:18 MarkDuplicates Tracking 492502 as yet unmatched pairs. 4324 records in RAM.
INFO 2026-06-08 08:13:19 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr3:179,209,689
INFO 2026-06-08 08:13:19 MarkDuplicates Tracking 491799 as yet unmatched pairs. 3614 records in RAM.
INFO 2026-06-08 08:13:21 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 1s. Last read position: chr3:184,308,726
INFO 2026-06-08 08:13:21 MarkDuplicates Tracking 491050 as yet unmatched pairs. 2851 records in RAM.
INFO 2026-06-08 08:13:22 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr3:194,437,250
INFO 2026-06-08 08:13:22 MarkDuplicates Tracking 489939 as yet unmatched pairs. 1725 records in RAM.
INFO 2026-06-08 08:13:24 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr3:197,525,744
INFO 2026-06-08 08:13:24 MarkDuplicates Tracking 488622 as yet unmatched pairs. 404 records in RAM.
INFO 2026-06-08 08:13:26 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr4:1,330,830
INFO 2026-06-08 08:13:26 MarkDuplicates Tracking 487181 as yet unmatched pairs. 12651 records in RAM.
INFO 2026-06-08 08:13:27 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr4:2,931,384
INFO 2026-06-08 08:13:27 MarkDuplicates Tracking 486805 as yet unmatched pairs. 12266 records in RAM.
INFO 2026-06-08 08:13:29 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr4:8,370,584
INFO 2026-06-08 08:13:29 MarkDuplicates Tracking 484614 as yet unmatched pairs. 10030 records in RAM.
INFO 2026-06-08 08:13:30 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr4:26,317,438
INFO 2026-06-08 08:13:30 MarkDuplicates Tracking 483399 as yet unmatched pairs. 8797 records in RAM.
INFO 2026-06-08 08:13:32 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr4:41,935,385
INFO 2026-06-08 08:13:32 MarkDuplicates Tracking 482674 as yet unmatched pairs. 8064 records in RAM.
INFO 2026-06-08 08:13:33 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr4:56,403,026
INFO 2026-06-08 08:13:33 MarkDuplicates Tracking 481685 as yet unmatched pairs. 7063 records in RAM.
INFO 2026-06-08 08:13:35 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr4:75,810,454
INFO 2026-06-08 08:13:35 MarkDuplicates Tracking 481006 as yet unmatched pairs. 6380 records in RAM.
INFO 2026-06-08 08:13:36 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr4:87,089,986
INFO 2026-06-08 08:13:36 MarkDuplicates Tracking 480230 as yet unmatched pairs. 5589 records in RAM.
INFO 2026-06-08 08:13:38 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr4:103,136,162
INFO 2026-06-08 08:13:38 MarkDuplicates Tracking 479031 as yet unmatched pairs. 4387 records in RAM.
INFO 2026-06-08 08:13:39 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr4:119,300,368
INFO 2026-06-08 08:13:39 MarkDuplicates Tracking 478309 as yet unmatched pairs. 3646 records in RAM.
INFO 2026-06-08 08:13:41 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr4:145,542,580
INFO 2026-06-08 08:13:41 MarkDuplicates Tracking 477369 as yet unmatched pairs. 2694 records in RAM.
INFO 2026-06-08 08:13:42 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr4:153,516,929
INFO 2026-06-08 08:13:42 MarkDuplicates Tracking 476601 as yet unmatched pairs. 1919 records in RAM.
INFO 2026-06-08 08:13:44 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr4:182,893,034
INFO 2026-06-08 08:13:44 MarkDuplicates Tracking 475777 as yet unmatched pairs. 1087 records in RAM.
INFO 2026-06-08 08:13:45 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr5:666,056
INFO 2026-06-08 08:13:45 MarkDuplicates Tracking 474198 as yet unmatched pairs. 22436 records in RAM.
INFO 2026-06-08 08:13:47 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr5:14,161,339
INFO 2026-06-08 08:13:47 MarkDuplicates Tracking 473436 as yet unmatched pairs. 21664 records in RAM.
INFO 2026-06-08 08:13:48 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr5:14,487,915
INFO 2026-06-08 08:13:48 MarkDuplicates Tracking 472684 as yet unmatched pairs. 20906 records in RAM.
INFO 2026-06-08 08:13:50 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr5:36,900,722
INFO 2026-06-08 08:13:50 MarkDuplicates Tracking 470652 as yet unmatched pairs. 18864 records in RAM.
INFO 2026-06-08 08:13:51 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr5:55,750,557
INFO 2026-06-08 08:13:51 MarkDuplicates Tracking 469704 as yet unmatched pairs. 17893 records in RAM.
INFO 2026-06-08 08:13:53 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 2s. Last read position: chr5:69,917,039
INFO 2026-06-08 08:13:53 MarkDuplicates Tracking 468976 as yet unmatched pairs. 17147 records in RAM.
INFO 2026-06-08 08:13:55 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr5:75,359,445
INFO 2026-06-08 08:13:55 MarkDuplicates Tracking 468422 as yet unmatched pairs. 16575 records in RAM.
INFO 2026-06-08 08:13:56 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr5:87,331,386
INFO 2026-06-08 08:13:56 MarkDuplicates Tracking 467600 as yet unmatched pairs. 15749 records in RAM.
INFO 2026-06-08 08:13:58 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr5:98,901,221
INFO 2026-06-08 08:13:58 MarkDuplicates Tracking 466777 as yet unmatched pairs. 14913 records in RAM.
INFO 2026-06-08 08:14:00 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr5:119,392,846
INFO 2026-06-08 08:14:00 MarkDuplicates Tracking 466016 as yet unmatched pairs. 14141 records in RAM.
INFO 2026-06-08 08:14:01 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr5:133,104,363
INFO 2026-06-08 08:14:01 MarkDuplicates Tracking 464904 as yet unmatched pairs. 13018 records in RAM.
INFO 2026-06-08 08:14:03 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr5:138,571,037
INFO 2026-06-08 08:14:03 MarkDuplicates Tracking 464511 as yet unmatched pairs. 12593 records in RAM.
INFO 2026-06-08 08:14:05 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr5:141,351,949
INFO 2026-06-08 08:14:05 MarkDuplicates Tracking 462795 as yet unmatched pairs. 10782 records in RAM.
INFO 2026-06-08 08:14:06 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr5:150,000,959
INFO 2026-06-08 08:14:06 MarkDuplicates Tracking 462614 as yet unmatched pairs. 10588 records in RAM.
INFO 2026-06-08 08:14:08 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr5:150,403,230
INFO 2026-06-08 08:14:08 MarkDuplicates Tracking 473591 as yet unmatched pairs. 21548 records in RAM.
INFO 2026-06-08 08:14:09 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr5:150,406,907
INFO 2026-06-08 08:14:09 MarkDuplicates Tracking 482180 as yet unmatched pairs. 30135 records in RAM.
INFO 2026-06-08 08:14:11 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr5:151,140,155
INFO 2026-06-08 08:14:11 MarkDuplicates Tracking 459413 as yet unmatched pairs. 7363 records in RAM.
INFO 2026-06-08 08:14:12 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr5:159,099,427
INFO 2026-06-08 08:14:12 MarkDuplicates Tracking 457678 as yet unmatched pairs. 5616 records in RAM.
INFO 2026-06-08 08:14:14 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr5:171,391,738
INFO 2026-06-08 08:14:14 MarkDuplicates Tracking 458696 as yet unmatched pairs. 6608 records in RAM.
INFO 2026-06-08 08:14:15 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr5:175,967,947
INFO 2026-06-08 08:14:15 MarkDuplicates Tracking 456576 as yet unmatched pairs. 4483 records in RAM.
INFO 2026-06-08 08:14:17 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr5:177,504,593
INFO 2026-06-08 08:14:17 MarkDuplicates Tracking 455095 as yet unmatched pairs. 2998 records in RAM.
INFO 2026-06-08 08:14:18 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr5:179,774,548
INFO 2026-06-08 08:14:18 MarkDuplicates Tracking 454531 as yet unmatched pairs. 2430 records in RAM.
INFO 2026-06-08 08:14:20 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr5:181,238,124
INFO 2026-06-08 08:14:20 MarkDuplicates Tracking 453674 as yet unmatched pairs. 1572 records in RAM.
INFO 2026-06-08 08:14:21 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr6:6,575,625
INFO 2026-06-08 08:14:21 MarkDuplicates Tracking 451267 as yet unmatched pairs. 27124 records in RAM.
INFO 2026-06-08 08:14:23 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr6:12,037,626
INFO 2026-06-08 08:14:23 MarkDuplicates Tracking 450022 as yet unmatched pairs. 25847 records in RAM.
INFO 2026-06-08 08:14:24 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr6:24,422,986
INFO 2026-06-08 08:14:24 MarkDuplicates Tracking 449046 as yet unmatched pairs. 24860 records in RAM.
INFO 2026-06-08 08:14:26 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr6:26,368,688
INFO 2026-06-08 08:14:26 MarkDuplicates Tracking 448314 as yet unmatched pairs. 24121 records in RAM.
INFO 2026-06-08 08:14:27 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr6:29,605,616
INFO 2026-06-08 08:14:27 MarkDuplicates Tracking 446861 as yet unmatched pairs. 22667 records in RAM.
INFO 2026-06-08 08:14:29 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr6:30,656,991
INFO 2026-06-08 08:14:29 MarkDuplicates Tracking 446041 as yet unmatched pairs. 21842 records in RAM.
INFO 2026-06-08 08:14:30 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr6:31,508,960
INFO 2026-06-08 08:14:30 MarkDuplicates Tracking 444830 as yet unmatched pairs. 20611 records in RAM.
INFO 2026-06-08 08:14:32 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr6:31,669,845
INFO 2026-06-08 08:14:32 MarkDuplicates Tracking 443963 as yet unmatched pairs. 19742 records in RAM.
INFO 2026-06-08 08:14:33 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr6:32,519,438
INFO 2026-06-08 08:14:33 MarkDuplicates Tracking 444095 as yet unmatched pairs. 19874 records in RAM.
INFO 2026-06-08 08:14:35 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr6:32,976,647
INFO 2026-06-08 08:14:35 MarkDuplicates Tracking 441800 as yet unmatched pairs. 17573 records in RAM.
INFO 2026-06-08 08:14:37 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr6:33,400,368
INFO 2026-06-08 08:14:37 MarkDuplicates Tracking 440794 as yet unmatched pairs. 16552 records in RAM.
INFO 2026-06-08 08:14:38 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr6:35,319,930
INFO 2026-06-08 08:14:38 MarkDuplicates Tracking 439797 as yet unmatched pairs. 15544 records in RAM.
INFO 2026-06-08 08:14:40 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr6:39,584,950
INFO 2026-06-08 08:14:40 MarkDuplicates Tracking 438478 as yet unmatched pairs. 14224 records in RAM.
INFO 2026-06-08 08:14:42 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr6:43,204,752
INFO 2026-06-08 08:14:42 MarkDuplicates Tracking 437397 as yet unmatched pairs. 13135 records in RAM.
INFO 2026-06-08 08:14:43 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr6:44,254,700
INFO 2026-06-08 08:14:43 MarkDuplicates Tracking 436400 as yet unmatched pairs. 12132 records in RAM.
INFO 2026-06-08 08:14:45 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr6:56,511,216
INFO 2026-06-08 08:14:45 MarkDuplicates Tracking 434953 as yet unmatched pairs. 10676 records in RAM.
INFO 2026-06-08 08:14:47 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr6:71,303,566
INFO 2026-06-08 08:14:47 MarkDuplicates Tracking 433923 as yet unmatched pairs. 9639 records in RAM.
INFO 2026-06-08 08:14:48 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr6:83,145,616
INFO 2026-06-08 08:14:48 MarkDuplicates Tracking 433185 as yet unmatched pairs. 8898 records in RAM.
INFO 2026-06-08 08:14:49 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr6:89,867,095
INFO 2026-06-08 08:14:49 MarkDuplicates Tracking 432040 as yet unmatched pairs. 7722 records in RAM.
INFO 2026-06-08 08:14:51 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr6:109,449,747
INFO 2026-06-08 08:14:51 MarkDuplicates Tracking 431871 as yet unmatched pairs. 7537 records in RAM.
INFO 2026-06-08 08:14:52 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr6:117,999,079
INFO 2026-06-08 08:14:52 MarkDuplicates Tracking 430061 as yet unmatched pairs. 5718 records in RAM.
INFO 2026-06-08 08:14:54 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr6:136,605,348
INFO 2026-06-08 08:14:54 MarkDuplicates Tracking 429271 as yet unmatched pairs. 4912 records in RAM.
INFO 2026-06-08 08:14:55 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr6:144,786,568
INFO 2026-06-08 08:14:55 MarkDuplicates Tracking 428420 as yet unmatched pairs. 4048 records in RAM.
INFO 2026-06-08 08:14:57 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr6:154,832,825
INFO 2026-06-08 08:14:57 MarkDuplicates Tracking 427042 as yet unmatched pairs. 2647 records in RAM.
INFO 2026-06-08 08:14:58 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr6:159,753,459
INFO 2026-06-08 08:14:58 MarkDuplicates Tracking 425839 as yet unmatched pairs. 1437 records in RAM.
INFO 2026-06-08 08:15:00 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr6:170,317,378
INFO 2026-06-08 08:15:00 MarkDuplicates Tracking 424796 as yet unmatched pairs. 384 records in RAM.
INFO 2026-06-08 08:15:01 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr7:2,365,678
INFO 2026-06-08 08:15:01 MarkDuplicates Tracking 423038 as yet unmatched pairs. 25922 records in RAM.
INFO 2026-06-08 08:15:03 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr7:5,370,607
INFO 2026-06-08 08:15:03 MarkDuplicates Tracking 422954 as yet unmatched pairs. 25838 records in RAM.
INFO 2026-06-08 08:15:05 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,495
INFO 2026-06-08 08:15:05 MarkDuplicates Tracking 423387 as yet unmatched pairs. 26254 records in RAM.
INFO 2026-06-08 08:15:06 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr7:6,731,901
INFO 2026-06-08 08:15:06 MarkDuplicates Tracking 418545 as yet unmatched pairs. 21401 records in RAM.
INFO 2026-06-08 08:15:08 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr7:24,663,653
INFO 2026-06-08 08:15:08 MarkDuplicates Tracking 417721 as yet unmatched pairs. 20559 records in RAM.
INFO 2026-06-08 08:15:09 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr7:34,932,080
INFO 2026-06-08 08:15:09 MarkDuplicates Tracking 416828 as yet unmatched pairs. 19656 records in RAM.
INFO 2026-06-08 08:15:11 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr7:44,108,026
INFO 2026-06-08 08:15:11 MarkDuplicates Tracking 415789 as yet unmatched pairs. 18602 records in RAM.
INFO 2026-06-08 08:15:12 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr7:50,342,983
INFO 2026-06-08 08:15:12 MarkDuplicates Tracking 414492 as yet unmatched pairs. 17292 records in RAM.
INFO 2026-06-08 08:15:13 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr7:72,870,454
INFO 2026-06-08 08:15:13 MarkDuplicates Tracking 413513 as yet unmatched pairs. 16296 records in RAM.
INFO 2026-06-08 08:15:15 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr7:74,107,101
INFO 2026-06-08 08:15:15 MarkDuplicates Tracking 413417 as yet unmatched pairs. 16200 records in RAM.
INFO 2026-06-08 08:15:17 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr7:75,314,503
INFO 2026-06-08 08:15:17 MarkDuplicates Tracking 411959 as yet unmatched pairs. 14738 records in RAM.
INFO 2026-06-08 08:15:18 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr7:77,119,611
INFO 2026-06-08 08:15:18 MarkDuplicates Tracking 411221 as yet unmatched pairs. 13998 records in RAM.
INFO 2026-06-08 08:15:20 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 2s. Last read position: chr7:92,518,157
INFO 2026-06-08 08:15:20 MarkDuplicates Tracking 410466 as yet unmatched pairs. 13226 records in RAM.
INFO 2026-06-08 08:15:22 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 2s. Last read position: chr7:99,374,757
INFO 2026-06-08 08:15:22 MarkDuplicates Tracking 410506 as yet unmatched pairs. 13248 records in RAM.
INFO 2026-06-08 08:15:24 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr7:100,353,605
INFO 2026-06-08 08:15:24 MarkDuplicates Tracking 408574 as yet unmatched pairs. 11314 records in RAM.
INFO 2026-06-08 08:15:26 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr7:101,087,850
INFO 2026-06-08 08:15:26 MarkDuplicates Tracking 407371 as yet unmatched pairs. 10108 records in RAM.
INFO 2026-06-08 08:15:27 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr7:102,652,382
INFO 2026-06-08 08:15:27 MarkDuplicates Tracking 406349 as yet unmatched pairs. 9082 records in RAM.
INFO 2026-06-08 08:15:28 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr7:112,458,921
INFO 2026-06-08 08:15:28 MarkDuplicates Tracking 405181 as yet unmatched pairs. 7906 records in RAM.
INFO 2026-06-08 08:15:30 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr7:127,887,902
INFO 2026-06-08 08:15:30 MarkDuplicates Tracking 407417 as yet unmatched pairs. 10086 records in RAM.
INFO 2026-06-08 08:15:31 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr7:131,050,249
INFO 2026-06-08 08:15:31 MarkDuplicates Tracking 403002 as yet unmatched pairs. 5648 records in RAM.
INFO 2026-06-08 08:15:33 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr7:137,928,187
INFO 2026-06-08 08:15:33 MarkDuplicates Tracking 408759 as yet unmatched pairs. 11403 records in RAM.
INFO 2026-06-08 08:15:34 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr7:140,800,408
INFO 2026-06-08 08:15:34 MarkDuplicates Tracking 401979 as yet unmatched pairs. 4614 records in RAM.
INFO 2026-06-08 08:15:36 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr7:149,266,334
INFO 2026-06-08 08:15:36 MarkDuplicates Tracking 400165 as yet unmatched pairs. 2795 records in RAM.
INFO 2026-06-08 08:15:37 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr7:151,216,024
INFO 2026-06-08 08:15:37 MarkDuplicates Tracking 398485 as yet unmatched pairs. 1115 records in RAM.
INFO 2026-06-08 08:15:39 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr7:157,409,964
INFO 2026-06-08 08:15:39 MarkDuplicates Tracking 397538 as yet unmatched pairs. 164 records in RAM.
INFO 2026-06-08 08:15:41 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr8:11,845,702
INFO 2026-06-08 08:15:41 MarkDuplicates Tracking 396801 as yet unmatched pairs. 16225 records in RAM.
INFO 2026-06-08 08:15:43 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr8:22,621,377
INFO 2026-06-08 08:15:43 MarkDuplicates Tracking 395357 as yet unmatched pairs. 14778 records in RAM.
INFO 2026-06-08 08:15:44 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr8:29,337,045
INFO 2026-06-08 08:15:44 MarkDuplicates Tracking 394701 as yet unmatched pairs. 14114 records in RAM.
INFO 2026-06-08 08:15:46 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr8:38,787,508
INFO 2026-06-08 08:15:46 MarkDuplicates Tracking 395115 as yet unmatched pairs. 14522 records in RAM.
INFO 2026-06-08 08:15:47 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr8:42,902,304
INFO 2026-06-08 08:15:47 MarkDuplicates Tracking 392671 as yet unmatched pairs. 12071 records in RAM.
INFO 2026-06-08 08:15:49 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr8:56,166,950
INFO 2026-06-08 08:15:49 MarkDuplicates Tracking 391835 as yet unmatched pairs. 11230 records in RAM.
INFO 2026-06-08 08:15:50 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr8:70,148,371
INFO 2026-06-08 08:15:50 MarkDuplicates Tracking 391677 as yet unmatched pairs. 11061 records in RAM.
INFO 2026-06-08 08:15:52 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr8:86,528,540
INFO 2026-06-08 08:15:52 MarkDuplicates Tracking 390190 as yet unmatched pairs. 9555 records in RAM.
INFO 2026-06-08 08:15:53 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr8:99,264,194
INFO 2026-06-08 08:15:53 MarkDuplicates Tracking 389194 as yet unmatched pairs. 8549 records in RAM.
INFO 2026-06-08 08:15:55 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr8:102,266,968
INFO 2026-06-08 08:15:55 MarkDuplicates Tracking 388295 as yet unmatched pairs. 7650 records in RAM.
INFO 2026-06-08 08:15:57 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 2s. Last read position: chr8:119,862,765
INFO 2026-06-08 08:15:57 MarkDuplicates Tracking 387250 as yet unmatched pairs. 6600 records in RAM.
INFO 2026-06-08 08:15:59 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr8:127,997,075
INFO 2026-06-08 08:15:59 MarkDuplicates Tracking 386184 as yet unmatched pairs. 5531 records in RAM.
INFO 2026-06-08 08:16:00 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr8:143,376,577
INFO 2026-06-08 08:16:00 MarkDuplicates Tracking 385214 as yet unmatched pairs. 4534 records in RAM.
INFO 2026-06-08 08:16:02 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr8:143,929,476
INFO 2026-06-08 08:16:02 MarkDuplicates Tracking 383655 as yet unmatched pairs. 2974 records in RAM.
INFO 2026-06-08 08:16:03 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr8:144,360,062
INFO 2026-06-08 08:16:03 MarkDuplicates Tracking 382302 as yet unmatched pairs. 1619 records in RAM.
INFO 2026-06-08 08:16:05 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr9:456,839
INFO 2026-06-08 08:16:05 MarkDuplicates Tracking 380645 as yet unmatched pairs. 22066 records in RAM.
INFO 2026-06-08 08:16:06 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr9:6,460,669
INFO 2026-06-08 08:16:06 MarkDuplicates Tracking 379673 as yet unmatched pairs. 21090 records in RAM.
INFO 2026-06-08 08:16:08 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr9:9,442,196
INFO 2026-06-08 08:16:08 MarkDuplicates Tracking 378027 as yet unmatched pairs. 19428 records in RAM.
INFO 2026-06-08 08:16:09 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr9:32,489,437
INFO 2026-06-08 08:16:09 MarkDuplicates Tracking 377219 as yet unmatched pairs. 18612 records in RAM.
INFO 2026-06-08 08:16:11 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr9:35,101,511
INFO 2026-06-08 08:16:11 MarkDuplicates Tracking 376448 as yet unmatched pairs. 17841 records in RAM.
INFO 2026-06-08 08:16:12 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr9:36,836,430
INFO 2026-06-08 08:16:12 MarkDuplicates Tracking 376803 as yet unmatched pairs. 18162 records in RAM.
INFO 2026-06-08 08:16:15 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 2s. Last read position: chr9:40,711,887
INFO 2026-06-08 08:16:15 MarkDuplicates Tracking 373835 as yet unmatched pairs. 15192 records in RAM.
INFO 2026-06-08 08:16:16 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr9:78,508,879
INFO 2026-06-08 08:16:16 MarkDuplicates Tracking 373162 as yet unmatched pairs. 14508 records in RAM.
INFO 2026-06-08 08:16:18 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr9:92,108,740
INFO 2026-06-08 08:16:18 MarkDuplicates Tracking 372388 as yet unmatched pairs. 13730 records in RAM.
INFO 2026-06-08 08:16:19 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr9:96,949,605
INFO 2026-06-08 08:16:19 MarkDuplicates Tracking 371410 as yet unmatched pairs. 12744 records in RAM.
INFO 2026-06-08 08:16:21 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr9:111,451,441
INFO 2026-06-08 08:16:21 MarkDuplicates Tracking 370442 as yet unmatched pairs. 11756 records in RAM.
INFO 2026-06-08 08:16:22 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr9:120,407,088
INFO 2026-06-08 08:16:22 MarkDuplicates Tracking 369347 as yet unmatched pairs. 10659 records in RAM.
INFO 2026-06-08 08:16:24 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr9:123,591,399
INFO 2026-06-08 08:16:24 MarkDuplicates Tracking 368722 as yet unmatched pairs. 10030 records in RAM.
INFO 2026-06-08 08:16:25 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr9:127,774,287
INFO 2026-06-08 08:16:25 MarkDuplicates Tracking 367643 as yet unmatched pairs. 8944 records in RAM.
INFO 2026-06-08 08:16:27 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr9:128,693,687
INFO 2026-06-08 08:16:27 MarkDuplicates Tracking 366243 as yet unmatched pairs. 7534 records in RAM.
INFO 2026-06-08 08:16:28 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr9:130,835,473
INFO 2026-06-08 08:16:28 MarkDuplicates Tracking 365942 as yet unmatched pairs. 7223 records in RAM.
INFO 2026-06-08 08:16:30 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr9:132,269,671
INFO 2026-06-08 08:16:30 MarkDuplicates Tracking 364020 as yet unmatched pairs. 5296 records in RAM.
INFO 2026-06-08 08:16:31 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr9:134,036,066
INFO 2026-06-08 08:16:31 MarkDuplicates Tracking 362987 as yet unmatched pairs. 4248 records in RAM.
INFO 2026-06-08 08:16:33 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr9:136,507,310
INFO 2026-06-08 08:16:33 MarkDuplicates Tracking 361690 as yet unmatched pairs. 2949 records in RAM.
INFO 2026-06-08 08:16:35 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr9:137,199,890
INFO 2026-06-08 08:16:35 MarkDuplicates Tracking 359957 as yet unmatched pairs. 1208 records in RAM.
INFO 2026-06-08 08:16:37 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 2s. Last read position: chr10:3,170,860
INFO 2026-06-08 08:16:37 MarkDuplicates Tracking 358427 as yet unmatched pairs. 15150 records in RAM.
INFO 2026-06-08 08:16:38 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr10:12,828,771
INFO 2026-06-08 08:16:38 MarkDuplicates Tracking 357821 as yet unmatched pairs. 14514 records in RAM.
INFO 2026-06-08 08:16:41 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 3s. Last read position: chr10:26,560,775
INFO 2026-06-08 08:16:41 MarkDuplicates Tracking 356616 as yet unmatched pairs. 13291 records in RAM.
INFO 2026-06-08 08:16:43 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr10:34,401,863
INFO 2026-06-08 08:16:43 MarkDuplicates Tracking 355846 as yet unmatched pairs. 12512 records in RAM.
INFO 2026-06-08 08:16:44 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr10:46,645,176
INFO 2026-06-08 08:16:44 MarkDuplicates Tracking 354963 as yet unmatched pairs. 11626 records in RAM.
INFO 2026-06-08 08:16:46 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr10:58,349,070
INFO 2026-06-08 08:16:46 MarkDuplicates Tracking 354158 as yet unmatched pairs. 10813 records in RAM.
INFO 2026-06-08 08:16:47 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr10:70,145,903
INFO 2026-06-08 08:16:47 MarkDuplicates Tracking 353392 as yet unmatched pairs. 10042 records in RAM.
INFO 2026-06-08 08:16:49 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr10:73,806,324
INFO 2026-06-08 08:16:49 MarkDuplicates Tracking 352157 as yet unmatched pairs. 8804 records in RAM.
INFO 2026-06-08 08:16:50 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr10:80,246,878
INFO 2026-06-08 08:16:50 MarkDuplicates Tracking 351095 as yet unmatched pairs. 7725 records in RAM.
INFO 2026-06-08 08:16:52 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr10:89,306,384
INFO 2026-06-08 08:16:52 MarkDuplicates Tracking 350424 as yet unmatched pairs. 7042 records in RAM.
INFO 2026-06-08 08:16:53 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr10:95,866,500
INFO 2026-06-08 08:16:53 MarkDuplicates Tracking 350378 as yet unmatched pairs. 6991 records in RAM.
INFO 2026-06-08 08:16:55 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr10:97,656,862
INFO 2026-06-08 08:16:55 MarkDuplicates Tracking 348360 as yet unmatched pairs. 4966 records in RAM.
INFO 2026-06-08 08:16:56 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr10:102,139,764
INFO 2026-06-08 08:16:56 MarkDuplicates Tracking 347246 as yet unmatched pairs. 3847 records in RAM.
INFO 2026-06-08 08:16:58 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr10:109,880,904
INFO 2026-06-08 08:16:58 MarkDuplicates Tracking 346223 as yet unmatched pairs. 2780 records in RAM.
INFO 2026-06-08 08:17:00 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr10:119,582,458
INFO 2026-06-08 08:17:00 MarkDuplicates Tracking 345495 as yet unmatched pairs. 2050 records in RAM.
INFO 2026-06-08 08:17:02 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 2s. Last read position: chr10:132,579,427
INFO 2026-06-08 08:17:02 MarkDuplicates Tracking 344186 as yet unmatched pairs. 708 records in RAM.
INFO 2026-06-08 08:17:04 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr11:319,886
INFO 2026-06-08 08:17:04 MarkDuplicates Tracking 342976 as yet unmatched pairs. 30010 records in RAM.
INFO 2026-06-08 08:17:05 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr11:840,424
INFO 2026-06-08 08:17:05 MarkDuplicates Tracking 341343 as yet unmatched pairs. 28374 records in RAM.
INFO 2026-06-08 08:17:07 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr11:4,086,530
INFO 2026-06-08 08:17:07 MarkDuplicates Tracking 340345 as yet unmatched pairs. 27373 records in RAM.
INFO 2026-06-08 08:17:08 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr11:8,684,796
INFO 2026-06-08 08:17:08 MarkDuplicates Tracking 339706 as yet unmatched pairs. 26730 records in RAM.
INFO 2026-06-08 08:17:10 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr11:17,168,901
INFO 2026-06-08 08:17:10 MarkDuplicates Tracking 337858 as yet unmatched pairs. 24870 records in RAM.
INFO 2026-06-08 08:17:11 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr11:34,137,008
INFO 2026-06-08 08:17:11 MarkDuplicates Tracking 337182 as yet unmatched pairs. 24177 records in RAM.
INFO 2026-06-08 08:17:13 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr11:46,669,489
INFO 2026-06-08 08:17:13 MarkDuplicates Tracking 336054 as yet unmatched pairs. 23038 records in RAM.
INFO 2026-06-08 08:17:14 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr11:57,494,002
INFO 2026-06-08 08:17:14 MarkDuplicates Tracking 334846 as yet unmatched pairs. 21830 records in RAM.
INFO 2026-06-08 08:17:16 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr11:60,469,657
INFO 2026-06-08 08:17:16 MarkDuplicates Tracking 335189 as yet unmatched pairs. 22170 records in RAM.
INFO 2026-06-08 08:17:18 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr11:61,967,511
INFO 2026-06-08 08:17:18 MarkDuplicates Tracking 332948 as yet unmatched pairs. 19899 records in RAM.
INFO 2026-06-08 08:17:20 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 2s. Last read position: chr11:62,789,340
INFO 2026-06-08 08:17:20 MarkDuplicates Tracking 331915 as yet unmatched pairs. 18859 records in RAM.
INFO 2026-06-08 08:18:26 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 65s. Last read position: chr11:64,289,311
INFO 2026-06-08 08:18:26 MarkDuplicates Tracking 330770 as yet unmatched pairs. 17693 records in RAM.
INFO 2026-06-08 08:18:28 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 2s. Last read position: chr11:64,909,055
INFO 2026-06-08 08:18:28 MarkDuplicates Tracking 329349 as yet unmatched pairs. 16272 records in RAM.
INFO 2026-06-08 08:18:30 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:07:59s. Time for last 1,000,000: 1s. Last read position: chr11:65,441,263
INFO 2026-06-08 08:18:30 MarkDuplicates Tracking 327875 as yet unmatched pairs. 14793 records in RAM.
INFO 2026-06-08 08:18:32 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 2s. Last read position: chr11:65,607,331
INFO 2026-06-08 08:18:32 MarkDuplicates Tracking 326869 as yet unmatched pairs. 13784 records in RAM.
INFO 2026-06-08 08:18:34 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 1s. Last read position: chr11:65,964,073
INFO 2026-06-08 08:18:34 MarkDuplicates Tracking 325139 as yet unmatched pairs. 12053 records in RAM.
INFO 2026-06-08 08:18:36 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 1s. Last read position: chr11:67,254,917
INFO 2026-06-08 08:18:36 MarkDuplicates Tracking 324325 as yet unmatched pairs. 11234 records in RAM.
INFO 2026-06-08 08:18:38 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 1s. Last read position: chr11:67,607,010
INFO 2026-06-08 08:18:38 MarkDuplicates Tracking 322701 as yet unmatched pairs. 9609 records in RAM.
INFO 2026-06-08 08:18:39 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 1s. Last read position: chr11:71,464,096
INFO 2026-06-08 08:18:39 MarkDuplicates Tracking 321121 as yet unmatched pairs. 8021 records in RAM.
INFO 2026-06-08 08:18:42 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 2s. Last read position: chr11:72,842,798
INFO 2026-06-08 08:18:42 MarkDuplicates Tracking 319934 as yet unmatched pairs. 6834 records in RAM.
INFO 2026-06-08 08:18:44 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:13s. Time for last 1,000,000: 2s. Last read position: chr11:77,358,943
INFO 2026-06-08 08:18:44 MarkDuplicates Tracking 318839 as yet unmatched pairs. 5738 records in RAM.
INFO 2026-06-08 08:18:46 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 1s. Last read position: chr11:94,179,848
INFO 2026-06-08 08:18:46 MarkDuplicates Tracking 317675 as yet unmatched pairs. 4553 records in RAM.
INFO 2026-06-08 08:18:47 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 1s. Last read position: chr11:108,353,795
INFO 2026-06-08 08:18:47 MarkDuplicates Tracking 316912 as yet unmatched pairs. 3779 records in RAM.
INFO 2026-06-08 08:18:49 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 1s. Last read position: chr11:117,820,861
INFO 2026-06-08 08:18:49 MarkDuplicates Tracking 316118 as yet unmatched pairs. 2978 records in RAM.
INFO 2026-06-08 08:18:52 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:21s. Time for last 1,000,000: 3s. Last read position: chr11:119,298,512
INFO 2026-06-08 08:18:52 MarkDuplicates Tracking 315234 as yet unmatched pairs. 2094 records in RAM.
INFO 2026-06-08 08:18:54 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr11:126,345,633
INFO 2026-06-08 08:18:54 MarkDuplicates Tracking 313538 as yet unmatched pairs. 392 records in RAM.
INFO 2026-06-08 08:18:56 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 2s. Last read position: chr12:890,493
INFO 2026-06-08 08:18:56 MarkDuplicates Tracking 313167 as yet unmatched pairs. 26700 records in RAM.
INFO 2026-06-08 08:18:58 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 1s. Last read position: chr12:6,557,365
INFO 2026-06-08 08:18:58 MarkDuplicates Tracking 311922 as yet unmatched pairs. 25455 records in RAM.
INFO 2026-06-08 08:18:59 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr12:6,965,540
INFO 2026-06-08 08:18:59 MarkDuplicates Tracking 310663 as yet unmatched pairs. 24193 records in RAM.
INFO 2026-06-08 08:19:01 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 1s. Last read position: chr12:11,171,261
INFO 2026-06-08 08:19:01 MarkDuplicates Tracking 309948 as yet unmatched pairs. 23467 records in RAM.
INFO 2026-06-08 08:19:03 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr12:21,476,090
INFO 2026-06-08 08:19:03 MarkDuplicates Tracking 308772 as yet unmatched pairs. 22282 records in RAM.
INFO 2026-06-08 08:19:04 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr12:26,770,322
INFO 2026-06-08 08:19:04 MarkDuplicates Tracking 308536 as yet unmatched pairs. 22045 records in RAM.
INFO 2026-06-08 08:19:06 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr12:40,322,342
INFO 2026-06-08 08:19:06 MarkDuplicates Tracking 307474 as yet unmatched pairs. 20974 records in RAM.
INFO 2026-06-08 08:19:08 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr12:48,783,136
INFO 2026-06-08 08:19:08 MarkDuplicates Tracking 306470 as yet unmatched pairs. 19966 records in RAM.
INFO 2026-06-08 08:19:10 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr12:49,522,762
INFO 2026-06-08 08:19:10 MarkDuplicates Tracking 305617 as yet unmatched pairs. 19113 records in RAM.
INFO 2026-06-08 08:19:11 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr12:53,160,812
INFO 2026-06-08 08:19:11 MarkDuplicates Tracking 304594 as yet unmatched pairs. 18082 records in RAM.
INFO 2026-06-08 08:19:13 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr12:54,241,841
INFO 2026-06-08 08:19:13 MarkDuplicates Tracking 303516 as yet unmatched pairs. 16993 records in RAM.
INFO 2026-06-08 08:19:15 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr12:56,155,546
INFO 2026-06-08 08:19:15 MarkDuplicates Tracking 302682 as yet unmatched pairs. 16159 records in RAM.
INFO 2026-06-08 08:19:17 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr12:56,670,344
INFO 2026-06-08 08:19:17 MarkDuplicates Tracking 302038 as yet unmatched pairs. 15515 records in RAM.
INFO 2026-06-08 08:19:19 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr12:57,106,257
INFO 2026-06-08 08:19:19 MarkDuplicates Tracking 305612 as yet unmatched pairs. 19089 records in RAM.
INFO 2026-06-08 08:19:22 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 3s. Last read position: chr12:57,720,793
INFO 2026-06-08 08:19:22 MarkDuplicates Tracking 299727 as yet unmatched pairs. 13203 records in RAM.
INFO 2026-06-08 08:19:24 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 2s. Last read position: chr12:68,719,421
INFO 2026-06-08 08:19:24 MarkDuplicates Tracking 298624 as yet unmatched pairs. 12096 records in RAM.
INFO 2026-06-08 08:19:26 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr12:80,815,402
INFO 2026-06-08 08:19:26 MarkDuplicates Tracking 297792 as yet unmatched pairs. 11264 records in RAM.
INFO 2026-06-08 08:19:28 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr12:95,495,017
INFO 2026-06-08 08:19:28 MarkDuplicates Tracking 296960 as yet unmatched pairs. 10426 records in RAM.
INFO 2026-06-08 08:19:29 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr12:104,265,792
INFO 2026-06-08 08:19:29 MarkDuplicates Tracking 295877 as yet unmatched pairs. 9340 records in RAM.
INFO 2026-06-08 08:19:31 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr12:109,983,407
INFO 2026-06-08 08:19:31 MarkDuplicates Tracking 295047 as yet unmatched pairs. 8501 records in RAM.
INFO 2026-06-08 08:19:33 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr12:112,184,923
INFO 2026-06-08 08:19:33 MarkDuplicates Tracking 293892 as yet unmatched pairs. 7346 records in RAM.
INFO 2026-06-08 08:19:35 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr12:113,180,953
INFO 2026-06-08 08:19:35 MarkDuplicates Tracking 292946 as yet unmatched pairs. 6400 records in RAM.
INFO 2026-06-08 08:19:36 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr12:120,178,746
INFO 2026-06-08 08:19:36 MarkDuplicates Tracking 292176 as yet unmatched pairs. 5620 records in RAM.
INFO 2026-06-08 08:19:38 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr12:121,814,189
INFO 2026-06-08 08:19:38 MarkDuplicates Tracking 290416 as yet unmatched pairs. 3860 records in RAM.
INFO 2026-06-08 08:19:40 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr12:124,335,584
INFO 2026-06-08 08:19:40 MarkDuplicates Tracking 289367 as yet unmatched pairs. 2806 records in RAM.
INFO 2026-06-08 08:19:41 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr12:131,906,907
INFO 2026-06-08 08:19:41 MarkDuplicates Tracking 288197 as yet unmatched pairs. 1633 records in RAM.
INFO 2026-06-08 08:19:43 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr12:132,807,941
INFO 2026-06-08 08:19:43 MarkDuplicates Tracking 287080 as yet unmatched pairs. 515 records in RAM.
INFO 2026-06-08 08:19:45 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 2s. Last read position: chr13:23,336,845
INFO 2026-06-08 08:19:45 MarkDuplicates Tracking 285991 as yet unmatched pairs. 6076 records in RAM.
INFO 2026-06-08 08:19:48 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 2s. Last read position: chr13:32,443,203
INFO 2026-06-08 08:19:48 MarkDuplicates Tracking 285081 as yet unmatched pairs. 5147 records in RAM.
INFO 2026-06-08 08:19:49 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr13:42,953,969
INFO 2026-06-08 08:19:49 MarkDuplicates Tracking 284531 as yet unmatched pairs. 4588 records in RAM.
INFO 2026-06-08 08:19:51 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr13:49,138,744
INFO 2026-06-08 08:19:51 MarkDuplicates Tracking 283412 as yet unmatched pairs. 3466 records in RAM.
INFO 2026-06-08 08:19:53 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr13:77,121,395
INFO 2026-06-08 08:19:53 MarkDuplicates Tracking 282805 as yet unmatched pairs. 2846 records in RAM.
INFO 2026-06-08 08:19:55 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr13:99,238,422
INFO 2026-06-08 08:19:55 MarkDuplicates Tracking 281459 as yet unmatched pairs. 1496 records in RAM.
INFO 2026-06-08 08:19:56 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr13:113,848,913
INFO 2026-06-08 08:19:56 MarkDuplicates Tracking 280142 as yet unmatched pairs. 169 records in RAM.
INFO 2026-06-08 08:19:58 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 2s. Last read position: chr14:21,524,164
INFO 2026-06-08 08:19:58 MarkDuplicates Tracking 279241 as yet unmatched pairs. 19208 records in RAM.
INFO 2026-06-08 08:20:00 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr14:24,099,564
INFO 2026-06-08 08:20:00 MarkDuplicates Tracking 278504 as yet unmatched pairs. 18457 records in RAM.
INFO 2026-06-08 08:20:02 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 2s. Last read position: chr14:24,339,830
INFO 2026-06-08 08:20:02 MarkDuplicates Tracking 276681 as yet unmatched pairs. 16634 records in RAM.
INFO 2026-06-08 08:20:04 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr14:35,404,485
INFO 2026-06-08 08:20:04 MarkDuplicates Tracking 275946 as yet unmatched pairs. 15879 records in RAM.
INFO 2026-06-08 08:20:06 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr14:49,586,612
INFO 2026-06-08 08:20:06 MarkDuplicates Tracking 293907 as yet unmatched pairs. 33837 records in RAM.
INFO 2026-06-08 08:20:07 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr14:49,586,729
INFO 2026-06-08 08:20:07 MarkDuplicates Tracking 274440 as yet unmatched pairs. 14366 records in RAM.
INFO 2026-06-08 08:20:09 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr14:49,862,574
INFO 2026-06-08 08:20:09 MarkDuplicates Tracking 286525 as yet unmatched pairs. 26446 records in RAM.
INFO 2026-06-08 08:20:10 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr14:49,862,672
INFO 2026-06-08 08:20:10 MarkDuplicates Tracking 307875 as yet unmatched pairs. 47795 records in RAM.
INFO 2026-06-08 08:20:12 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr14:53,152,880
INFO 2026-06-08 08:20:12 MarkDuplicates Tracking 274448 as yet unmatched pairs. 14363 records in RAM.
INFO 2026-06-08 08:20:15 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 2s. Last read position: chr14:63,556,461
INFO 2026-06-08 08:20:15 MarkDuplicates Tracking 270712 as yet unmatched pairs. 10625 records in RAM.
INFO 2026-06-08 08:20:16 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr14:65,507,956
INFO 2026-06-08 08:20:16 MarkDuplicates Tracking 269799 as yet unmatched pairs. 9708 records in RAM.
INFO 2026-06-08 08:20:18 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr14:70,642,487
INFO 2026-06-08 08:20:18 MarkDuplicates Tracking 269039 as yet unmatched pairs. 8937 records in RAM.
INFO 2026-06-08 08:20:20 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr14:73,739,666
INFO 2026-06-08 08:20:20 MarkDuplicates Tracking 268619 as yet unmatched pairs. 8500 records in RAM.
INFO 2026-06-08 08:20:22 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr14:81,487,926
INFO 2026-06-08 08:20:22 MarkDuplicates Tracking 266860 as yet unmatched pairs. 6722 records in RAM.
INFO 2026-06-08 08:20:24 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr14:93,220,322
INFO 2026-06-08 08:20:24 MarkDuplicates Tracking 265801 as yet unmatched pairs. 5648 records in RAM.
INFO 2026-06-08 08:20:25 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr14:100,342,424
INFO 2026-06-08 08:20:25 MarkDuplicates Tracking 265124 as yet unmatched pairs. 4930 records in RAM.
INFO 2026-06-08 08:20:27 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr14:103,534,698
INFO 2026-06-08 08:20:27 MarkDuplicates Tracking 263495 as yet unmatched pairs. 3300 records in RAM.
INFO 2026-06-08 08:20:29 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,860
INFO 2026-06-08 08:20:29 MarkDuplicates Tracking 263170 as yet unmatched pairs. 2962 records in RAM.
INFO 2026-06-08 08:20:31 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr14:105,854,466
INFO 2026-06-08 08:20:31 MarkDuplicates Tracking 263179 as yet unmatched pairs. 2971 records in RAM.
INFO 2026-06-08 08:20:33 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr14:105,930,362
INFO 2026-06-08 08:20:33 MarkDuplicates Tracking 261563 as yet unmatched pairs. 1349 records in RAM.
INFO 2026-06-08 08:20:35 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 2s. Last read position: chr15:30,725,259
INFO 2026-06-08 08:20:35 MarkDuplicates Tracking 259667 as yet unmatched pairs. 14757 records in RAM.
INFO 2026-06-08 08:20:37 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr15:38,559,969
INFO 2026-06-08 08:20:37 MarkDuplicates Tracking 259515 as yet unmatched pairs. 14604 records in RAM.
INFO 2026-06-08 08:20:39 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr15:41,749,688
INFO 2026-06-08 08:20:39 MarkDuplicates Tracking 258312 as yet unmatched pairs. 13399 records in RAM.
INFO 2026-06-08 08:20:40 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr15:43,792,345
INFO 2026-06-08 08:20:40 MarkDuplicates Tracking 257522 as yet unmatched pairs. 12602 records in RAM.
INFO 2026-06-08 08:20:42 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr15:50,286,089
INFO 2026-06-08 08:20:42 MarkDuplicates Tracking 255847 as yet unmatched pairs. 10926 records in RAM.
INFO 2026-06-08 08:20:44 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr15:57,091,868
INFO 2026-06-08 08:20:44 MarkDuplicates Tracking 255982 as yet unmatched pairs. 11061 records in RAM.
INFO 2026-06-08 08:20:46 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr15:62,725,053
INFO 2026-06-08 08:20:46 MarkDuplicates Tracking 254063 as yet unmatched pairs. 9125 records in RAM.
INFO 2026-06-08 08:20:47 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr15:65,556,806
INFO 2026-06-08 08:20:47 MarkDuplicates Tracking 253079 as yet unmatched pairs. 8134 records in RAM.
INFO 2026-06-08 08:20:49 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr15:70,056,363
INFO 2026-06-08 08:20:49 MarkDuplicates Tracking 252469 as yet unmatched pairs. 7521 records in RAM.
INFO 2026-06-08 08:20:51 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 2s. Last read position: chr15:74,035,682
INFO 2026-06-08 08:20:51 MarkDuplicates Tracking 251987 as yet unmatched pairs. 7037 records in RAM.
INFO 2026-06-08 08:20:53 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr15:75,208,070
INFO 2026-06-08 08:20:53 MarkDuplicates Tracking 250521 as yet unmatched pairs. 5568 records in RAM.
INFO 2026-06-08 08:20:55 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 2s. Last read position: chr15:78,544,257
INFO 2026-06-08 08:20:55 MarkDuplicates Tracking 248638 as yet unmatched pairs. 3682 records in RAM.
INFO 2026-06-08 08:20:57 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 2s. Last read position: chr15:85,118,148
INFO 2026-06-08 08:20:57 MarkDuplicates Tracking 247511 as yet unmatched pairs. 2536 records in RAM.
INFO 2026-06-08 08:20:59 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr15:90,608,496
INFO 2026-06-08 08:20:59 MarkDuplicates Tracking 246362 as yet unmatched pairs. 1386 records in RAM.
INFO 2026-06-08 08:21:01 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr15:101,276,674
INFO 2026-06-08 08:21:01 MarkDuplicates Tracking 245099 as yet unmatched pairs. 114 records in RAM.
INFO 2026-06-08 08:21:03 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 2s. Last read position: chr16:673,128
INFO 2026-06-08 08:21:03 MarkDuplicates Tracking 244136 as yet unmatched pairs. 32049 records in RAM.
INFO 2026-06-08 08:21:05 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr16:1,778,891
INFO 2026-06-08 08:21:05 MarkDuplicates Tracking 242018 as yet unmatched pairs. 29928 records in RAM.
INFO 2026-06-08 08:21:07 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr16:2,244,437
INFO 2026-06-08 08:21:07 MarkDuplicates Tracking 240691 as yet unmatched pairs. 28594 records in RAM.
INFO 2026-06-08 08:21:09 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr16:2,767,945
INFO 2026-06-08 08:21:09 MarkDuplicates Tracking 240076 as yet unmatched pairs. 27979 records in RAM.
INFO 2026-06-08 08:21:10 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr16:4,343,235
INFO 2026-06-08 08:21:10 MarkDuplicates Tracking 237874 as yet unmatched pairs. 25777 records in RAM.
INFO 2026-06-08 08:21:12 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr16:10,903,733
INFO 2026-06-08 08:21:12 MarkDuplicates Tracking 236480 as yet unmatched pairs. 24381 records in RAM.
INFO 2026-06-08 08:21:15 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 2s. Last read position: chr16:12,436,931
INFO 2026-06-08 08:21:15 MarkDuplicates Tracking 235159 as yet unmatched pairs. 23058 records in RAM.
INFO 2026-06-08 08:21:17 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr16:15,611,035
INFO 2026-06-08 08:21:17 MarkDuplicates Tracking 234729 as yet unmatched pairs. 22626 records in RAM.
INFO 2026-06-08 08:21:18 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr16:18,343,481
INFO 2026-06-08 08:21:18 MarkDuplicates Tracking 234082 as yet unmatched pairs. 21978 records in RAM.
INFO 2026-06-08 08:21:20 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr16:19,521,858
INFO 2026-06-08 08:21:20 MarkDuplicates Tracking 233417 as yet unmatched pairs. 21312 records in RAM.
INFO 2026-06-08 08:21:21 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr16:21,433,755
INFO 2026-06-08 08:21:21 MarkDuplicates Tracking 232875 as yet unmatched pairs. 20770 records in RAM.
INFO 2026-06-08 08:21:23 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr16:21,848,664
INFO 2026-06-08 08:21:23 MarkDuplicates Tracking 232621 as yet unmatched pairs. 20515 records in RAM.
INFO 2026-06-08 08:21:24 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr16:22,509,109
INFO 2026-06-08 08:21:24 MarkDuplicates Tracking 232138 as yet unmatched pairs. 20028 records in RAM.
INFO 2026-06-08 08:21:26 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr16:23,524,417
INFO 2026-06-08 08:21:26 MarkDuplicates Tracking 232076 as yet unmatched pairs. 19966 records in RAM.
INFO 2026-06-08 08:21:27 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr16:28,332,468
INFO 2026-06-08 08:21:27 MarkDuplicates Tracking 230827 as yet unmatched pairs. 18717 records in RAM.
INFO 2026-06-08 08:21:29 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr16:28,935,506
INFO 2026-06-08 08:21:29 MarkDuplicates Tracking 230470 as yet unmatched pairs. 18358 records in RAM.
INFO 2026-06-08 08:21:31 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr16:29,485,391
INFO 2026-06-08 08:21:31 MarkDuplicates Tracking 229740 as yet unmatched pairs. 17628 records in RAM.
INFO 2026-06-08 08:21:32 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr16:29,840,234
INFO 2026-06-08 08:21:32 MarkDuplicates Tracking 228808 as yet unmatched pairs. 16696 records in RAM.
INFO 2026-06-08 08:21:34 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr16:30,224,667
INFO 2026-06-08 08:21:34 MarkDuplicates Tracking 227514 as yet unmatched pairs. 15402 records in RAM.
INFO 2026-06-08 08:21:36 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr16:30,534,602
INFO 2026-06-08 08:21:36 MarkDuplicates Tracking 226801 as yet unmatched pairs. 14680 records in RAM.
INFO 2026-06-08 08:21:38 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr16:31,081,552
INFO 2026-06-08 08:21:38 MarkDuplicates Tracking 225392 as yet unmatched pairs. 13267 records in RAM.
INFO 2026-06-08 08:21:40 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr16:48,303,295
INFO 2026-06-08 08:21:40 MarkDuplicates Tracking 224502 as yet unmatched pairs. 12377 records in RAM.
INFO 2026-06-08 08:21:41 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr16:56,939,348
INFO 2026-06-08 08:21:41 MarkDuplicates Tracking 223544 as yet unmatched pairs. 11418 records in RAM.
INFO 2026-06-08 08:21:43 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr16:58,672,931
INFO 2026-06-08 08:21:43 MarkDuplicates Tracking 222304 as yet unmatched pairs. 10176 records in RAM.
INFO 2026-06-08 08:21:46 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 2s. Last read position: chr16:67,734,871
INFO 2026-06-08 08:21:46 MarkDuplicates Tracking 220846 as yet unmatched pairs. 8716 records in RAM.
INFO 2026-06-08 08:21:48 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 2s. Last read position: chr16:69,693,120
INFO 2026-06-08 08:21:48 MarkDuplicates Tracking 219997 as yet unmatched pairs. 7866 records in RAM.
INFO 2026-06-08 08:21:50 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 2s. Last read position: chr16:71,839,701
INFO 2026-06-08 08:21:50 MarkDuplicates Tracking 218588 as yet unmatched pairs. 6457 records in RAM.
INFO 2026-06-08 08:21:52 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr16:81,012,059
INFO 2026-06-08 08:21:52 MarkDuplicates Tracking 217717 as yet unmatched pairs. 5573 records in RAM.
INFO 2026-06-08 08:21:54 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr16:85,661,519
INFO 2026-06-08 08:21:54 MarkDuplicates Tracking 217533 as yet unmatched pairs. 5388 records in RAM.
INFO 2026-06-08 08:21:56 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr16:88,646,787
INFO 2026-06-08 08:21:56 MarkDuplicates Tracking 216415 as yet unmatched pairs. 4265 records in RAM.
INFO 2026-06-08 08:21:57 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr16:89,290,639
INFO 2026-06-08 08:21:57 MarkDuplicates Tracking 213739 as yet unmatched pairs. 1589 records in RAM.
INFO 2026-06-08 08:21:59 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr17:115,754
INFO 2026-06-08 08:21:59 MarkDuplicates Tracking 212143 as yet unmatched pairs. 36532 records in RAM.
INFO 2026-06-08 08:22:01 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr17:1,725,276
INFO 2026-06-08 08:22:01 MarkDuplicates Tracking 211346 as yet unmatched pairs. 35732 records in RAM.
INFO 2026-06-08 08:22:03 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr17:4,006,918
INFO 2026-06-08 08:22:03 MarkDuplicates Tracking 209854 as yet unmatched pairs. 34240 records in RAM.
INFO 2026-06-08 08:22:05 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr17:5,182,621
INFO 2026-06-08 08:22:05 MarkDuplicates Tracking 208589 as yet unmatched pairs. 32972 records in RAM.
INFO 2026-06-08 08:22:07 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 2s. Last read position: chr17:7,311,834
INFO 2026-06-08 08:22:07 MarkDuplicates Tracking 207567 as yet unmatched pairs. 31947 records in RAM.
INFO 2026-06-08 08:22:09 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 2s. Last read position: chr17:7,847,207
INFO 2026-06-08 08:22:09 MarkDuplicates Tracking 206197 as yet unmatched pairs. 30576 records in RAM.
INFO 2026-06-08 08:22:11 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr17:9,912,126
INFO 2026-06-08 08:22:11 MarkDuplicates Tracking 204902 as yet unmatched pairs. 29264 records in RAM.
INFO 2026-06-08 08:22:13 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr17:17,164,576
INFO 2026-06-08 08:22:13 MarkDuplicates Tracking 204096 as yet unmatched pairs. 28451 records in RAM.
INFO 2026-06-08 08:22:15 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr17:19,022,031
INFO 2026-06-08 08:22:15 MarkDuplicates Tracking 202949 as yet unmatched pairs. 27304 records in RAM.
INFO 2026-06-08 08:22:16 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr17:28,372,065
INFO 2026-06-08 08:22:16 MarkDuplicates Tracking 201717 as yet unmatched pairs. 26071 records in RAM.
INFO 2026-06-08 08:22:18 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr17:29,267,024
INFO 2026-06-08 08:22:18 MarkDuplicates Tracking 200737 as yet unmatched pairs. 25091 records in RAM.
INFO 2026-06-08 08:22:20 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr17:31,988,336
INFO 2026-06-08 08:22:20 MarkDuplicates Tracking 200607 as yet unmatched pairs. 24961 records in RAM.
INFO 2026-06-08 08:22:22 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 2s. Last read position: chr17:35,838,490
INFO 2026-06-08 08:22:22 MarkDuplicates Tracking 198956 as yet unmatched pairs. 23308 records in RAM.
INFO 2026-06-08 08:22:24 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr17:38,007,193
INFO 2026-06-08 08:22:24 MarkDuplicates Tracking 198355 as yet unmatched pairs. 22707 records in RAM.
INFO 2026-06-08 08:22:25 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr17:39,201,215
INFO 2026-06-08 08:22:25 MarkDuplicates Tracking 198935 as yet unmatched pairs. 23285 records in RAM.
INFO 2026-06-08 08:22:27 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr17:40,354,429
INFO 2026-06-08 08:22:27 MarkDuplicates Tracking 197455 as yet unmatched pairs. 21798 records in RAM.
INFO 2026-06-08 08:22:29 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 2s. Last read position: chr17:42,494,353
INFO 2026-06-08 08:22:29 MarkDuplicates Tracking 195126 as yet unmatched pairs. 19467 records in RAM.
INFO 2026-06-08 08:22:31 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr17:43,504,804
INFO 2026-06-08 08:22:31 MarkDuplicates Tracking 194013 as yet unmatched pairs. 18352 records in RAM.
INFO 2026-06-08 08:22:32 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr17:45,230,672
INFO 2026-06-08 08:22:32 MarkDuplicates Tracking 192817 as yet unmatched pairs. 17155 records in RAM.
INFO 2026-06-08 08:22:35 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 2s. Last read position: chr17:47,050,504
INFO 2026-06-08 08:22:35 MarkDuplicates Tracking 191745 as yet unmatched pairs. 16079 records in RAM.
INFO 2026-06-08 08:22:37 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 2s. Last read position: chr17:48,908,353
INFO 2026-06-08 08:22:37 MarkDuplicates Tracking 190601 as yet unmatched pairs. 14923 records in RAM.
INFO 2026-06-08 08:22:39 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr17:56,904,421
INFO 2026-06-08 08:22:39 MarkDuplicates Tracking 189495 as yet unmatched pairs. 13813 records in RAM.
INFO 2026-06-08 08:22:40 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr17:59,676,978
INFO 2026-06-08 08:22:40 MarkDuplicates Tracking 188487 as yet unmatched pairs. 12798 records in RAM.
INFO 2026-06-08 08:22:42 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr17:63,698,903
INFO 2026-06-08 08:22:42 MarkDuplicates Tracking 189089 as yet unmatched pairs. 13398 records in RAM.
INFO 2026-06-08 08:22:44 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr17:67,215,313
INFO 2026-06-08 08:22:44 MarkDuplicates Tracking 186269 as yet unmatched pairs. 10558 records in RAM.
INFO 2026-06-08 08:22:45 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr17:74,773,650
INFO 2026-06-08 08:22:45 MarkDuplicates Tracking 185351 as yet unmatched pairs. 9635 records in RAM.
INFO 2026-06-08 08:22:47 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr17:75,840,562
INFO 2026-06-08 08:22:47 MarkDuplicates Tracking 184296 as yet unmatched pairs. 8580 records in RAM.
INFO 2026-06-08 08:22:49 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr17:77,482,159
INFO 2026-06-08 08:22:49 MarkDuplicates Tracking 184056 as yet unmatched pairs. 8323 records in RAM.
INFO 2026-06-08 08:22:50 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr17:78,409,842
INFO 2026-06-08 08:22:50 MarkDuplicates Tracking 181312 as yet unmatched pairs. 5566 records in RAM.
INFO 2026-06-08 08:22:52 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 2s. Last read position: chr17:80,351,763
INFO 2026-06-08 08:22:52 MarkDuplicates Tracking 180192 as yet unmatched pairs. 4438 records in RAM.
INFO 2026-06-08 08:22:54 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr17:81,686,997
INFO 2026-06-08 08:22:54 MarkDuplicates Tracking 178836 as yet unmatched pairs. 3074 records in RAM.
INFO 2026-06-08 08:22:56 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr17:82,084,001
INFO 2026-06-08 08:22:56 MarkDuplicates Tracking 177800 as yet unmatched pairs. 2038 records in RAM.
INFO 2026-06-08 08:22:58 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr18:743,283
INFO 2026-06-08 08:22:58 MarkDuplicates Tracking 175669 as yet unmatched pairs. 6993 records in RAM.
INFO 2026-06-08 08:23:01 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 2s. Last read position: chr18:12,825,819
INFO 2026-06-08 08:23:01 MarkDuplicates Tracking 174749 as yet unmatched pairs. 6072 records in RAM.
INFO 2026-06-08 08:23:03 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 2s. Last read position: chr18:31,660,775
INFO 2026-06-08 08:23:03 MarkDuplicates Tracking 173754 as yet unmatched pairs. 5073 records in RAM.
INFO 2026-06-08 08:23:05 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr18:49,490,475
INFO 2026-06-08 08:23:05 MarkDuplicates Tracking 173084 as yet unmatched pairs. 4400 records in RAM.
INFO 2026-06-08 08:23:06 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr18:59,902,715
INFO 2026-06-08 08:23:06 MarkDuplicates Tracking 171906 as yet unmatched pairs. 3218 records in RAM.
INFO 2026-06-08 08:23:08 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr18:63,318,510
INFO 2026-06-08 08:23:08 MarkDuplicates Tracking 172699 as yet unmatched pairs. 4010 records in RAM.
INFO 2026-06-08 08:23:10 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 2s. Last read position: chr19:60,542
INFO 2026-06-08 08:23:10 MarkDuplicates Tracking 168712 as yet unmatched pairs. 54044 records in RAM.
INFO 2026-06-08 08:23:12 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr19:1,037,681
INFO 2026-06-08 08:23:12 MarkDuplicates Tracking 167338 as yet unmatched pairs. 52667 records in RAM.
INFO 2026-06-08 08:23:14 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr19:1,271,549
INFO 2026-06-08 08:23:14 MarkDuplicates Tracking 165854 as yet unmatched pairs. 51183 records in RAM.
INFO 2026-06-08 08:23:16 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr19:1,877,545
INFO 2026-06-08 08:23:16 MarkDuplicates Tracking 164917 as yet unmatched pairs. 50246 records in RAM.
INFO 2026-06-08 08:23:18 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr19:2,249,632
INFO 2026-06-08 08:23:18 MarkDuplicates Tracking 162237 as yet unmatched pairs. 47566 records in RAM.
INFO 2026-06-08 08:23:19 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr19:3,544,333
INFO 2026-06-08 08:23:19 MarkDuplicates Tracking 160614 as yet unmatched pairs. 45943 records in RAM.
INFO 2026-06-08 08:23:21 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr19:4,659,129
INFO 2026-06-08 08:23:21 MarkDuplicates Tracking 159022 as yet unmatched pairs. 44349 records in RAM.
INFO 2026-06-08 08:23:23 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr19:5,904,940
INFO 2026-06-08 08:23:23 MarkDuplicates Tracking 157842 as yet unmatched pairs. 43169 records in RAM.
INFO 2026-06-08 08:23:26 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 2s. Last read position: chr19:7,468,940
INFO 2026-06-08 08:23:26 MarkDuplicates Tracking 156314 as yet unmatched pairs. 41640 records in RAM.
INFO 2026-06-08 08:23:28 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 2s. Last read position: chr19:8,488,797
INFO 2026-06-08 08:23:28 MarkDuplicates Tracking 154776 as yet unmatched pairs. 40102 records in RAM.
INFO 2026-06-08 08:23:30 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr19:10,334,626
INFO 2026-06-08 08:23:30 MarkDuplicates Tracking 153969 as yet unmatched pairs. 39295 records in RAM.
INFO 2026-06-08 08:23:32 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr19:10,927,815
INFO 2026-06-08 08:23:32 MarkDuplicates Tracking 152226 as yet unmatched pairs. 37545 records in RAM.
INFO 2026-06-08 08:23:33 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr19:12,664,831
INFO 2026-06-08 08:23:33 MarkDuplicates Tracking 151593 as yet unmatched pairs. 36910 records in RAM.
INFO 2026-06-08 08:23:35 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr19:13,795,651
INFO 2026-06-08 08:23:35 MarkDuplicates Tracking 149581 as yet unmatched pairs. 34897 records in RAM.
INFO 2026-06-08 08:23:37 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr19:14,611,617
INFO 2026-06-08 08:23:37 MarkDuplicates Tracking 147833 as yet unmatched pairs. 33145 records in RAM.
INFO 2026-06-08 08:23:39 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr19:15,457,596
INFO 2026-06-08 08:23:39 MarkDuplicates Tracking 146953 as yet unmatched pairs. 32263 records in RAM.
INFO 2026-06-08 08:23:40 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr19:17,232,416
INFO 2026-06-08 08:23:40 MarkDuplicates Tracking 145295 as yet unmatched pairs. 30596 records in RAM.
INFO 2026-06-08 08:23:42 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr19:18,156,012
INFO 2026-06-08 08:23:42 MarkDuplicates Tracking 144161 as yet unmatched pairs. 29461 records in RAM.
INFO 2026-06-08 08:23:44 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr19:19,008,333
INFO 2026-06-08 08:23:44 MarkDuplicates Tracking 142710 as yet unmatched pairs. 28010 records in RAM.
INFO 2026-06-08 08:23:46 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr19:19,673,249
INFO 2026-06-08 08:23:46 MarkDuplicates Tracking 140822 as yet unmatched pairs. 26122 records in RAM.
INFO 2026-06-08 08:23:48 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr19:35,009,135
INFO 2026-06-08 08:23:48 MarkDuplicates Tracking 140179 as yet unmatched pairs. 25478 records in RAM.
INFO 2026-06-08 08:23:49 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr19:35,737,701
INFO 2026-06-08 08:23:49 MarkDuplicates Tracking 137461 as yet unmatched pairs. 22760 records in RAM.
INFO 2026-06-08 08:23:51 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr19:38,415,037
INFO 2026-06-08 08:23:51 MarkDuplicates Tracking 136234 as yet unmatched pairs. 21532 records in RAM.
INFO 2026-06-08 08:23:53 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 2s. Last read position: chr19:39,408,254
INFO 2026-06-08 08:23:53 MarkDuplicates Tracking 135584 as yet unmatched pairs. 20881 records in RAM.
INFO 2026-06-08 08:23:56 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 2s. Last read position: chr19:40,256,990
INFO 2026-06-08 08:23:56 MarkDuplicates Tracking 136797 as yet unmatched pairs. 22094 records in RAM.
INFO 2026-06-08 08:23:57 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr19:41,877,263
INFO 2026-06-08 08:23:57 MarkDuplicates Tracking 132664 as yet unmatched pairs. 17961 records in RAM.
INFO 2026-06-08 08:23:59 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr19:42,233,174
INFO 2026-06-08 08:23:59 MarkDuplicates Tracking 131813 as yet unmatched pairs. 17110 records in RAM.
INFO 2026-06-08 08:24:01 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr19:42,293,776
INFO 2026-06-08 08:24:01 MarkDuplicates Tracking 130760 as yet unmatched pairs. 16057 records in RAM.
INFO 2026-06-08 08:24:02 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr19:45,064,556
INFO 2026-06-08 08:24:02 MarkDuplicates Tracking 129286 as yet unmatched pairs. 14559 records in RAM.
INFO 2026-06-08 08:24:04 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr19:45,826,280
INFO 2026-06-08 08:24:04 MarkDuplicates Tracking 127466 as yet unmatched pairs. 12738 records in RAM.
INFO 2026-06-08 08:24:06 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr19:47,209,240
INFO 2026-06-08 08:24:06 MarkDuplicates Tracking 125712 as yet unmatched pairs. 10983 records in RAM.
INFO 2026-06-08 08:24:08 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr19:48,629,313
INFO 2026-06-08 08:24:08 MarkDuplicates Tracking 124174 as yet unmatched pairs. 9445 records in RAM.
INFO 2026-06-08 08:24:09 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr19:49,491,502
INFO 2026-06-08 08:24:09 MarkDuplicates Tracking 122873 as yet unmatched pairs. 8144 records in RAM.
INFO 2026-06-08 08:24:11 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr19:49,860,043
INFO 2026-06-08 08:24:11 MarkDuplicates Tracking 121405 as yet unmatched pairs. 6676 records in RAM.
INFO 2026-06-08 08:24:14 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 3s. Last read position: chr19:50,431,210
INFO 2026-06-08 08:24:14 MarkDuplicates Tracking 119701 as yet unmatched pairs. 4969 records in RAM.
INFO 2026-06-08 08:24:17 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 2s. Last read position: chr19:54,355,972
INFO 2026-06-08 08:24:17 MarkDuplicates Tracking 118614 as yet unmatched pairs. 3881 records in RAM.
INFO 2026-06-08 08:24:19 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr19:55,482,168
INFO 2026-06-08 08:24:19 MarkDuplicates Tracking 117250 as yet unmatched pairs. 2514 records in RAM.
INFO 2026-06-08 08:24:20 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr19:57,803,616
INFO 2026-06-08 08:24:20 MarkDuplicates Tracking 115610 as yet unmatched pairs. 871 records in RAM.
INFO 2026-06-08 08:24:22 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr20:483,960
INFO 2026-06-08 08:24:22 MarkDuplicates Tracking 114810 as yet unmatched pairs. 13995 records in RAM.
INFO 2026-06-08 08:24:24 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr20:5,100,749
INFO 2026-06-08 08:24:24 MarkDuplicates Tracking 113234 as yet unmatched pairs. 12419 records in RAM.
INFO 2026-06-08 08:24:26 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr20:20,640,704
INFO 2026-06-08 08:24:26 MarkDuplicates Tracking 112439 as yet unmatched pairs. 11622 records in RAM.
INFO 2026-06-08 08:24:27 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr20:33,677,519
INFO 2026-06-08 08:24:27 MarkDuplicates Tracking 111150 as yet unmatched pairs. 10330 records in RAM.
INFO 2026-06-08 08:24:29 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr20:35,721,838
INFO 2026-06-08 08:24:29 MarkDuplicates Tracking 110426 as yet unmatched pairs. 9606 records in RAM.
INFO 2026-06-08 08:24:32 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 2s. Last read position: chr20:41,071,257
INFO 2026-06-08 08:24:32 MarkDuplicates Tracking 108810 as yet unmatched pairs. 7988 records in RAM.
INFO 2026-06-08 08:24:34 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr20:45,894,013
INFO 2026-06-08 08:24:34 MarkDuplicates Tracking 107902 as yet unmatched pairs. 7080 records in RAM.
INFO 2026-06-08 08:24:36 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr20:48,997,647
INFO 2026-06-08 08:24:36 MarkDuplicates Tracking 106903 as yet unmatched pairs. 6081 records in RAM.
INFO 2026-06-08 08:24:37 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr20:53,582,647
INFO 2026-06-08 08:24:37 MarkDuplicates Tracking 105856 as yet unmatched pairs. 5034 records in RAM.
INFO 2026-06-08 08:24:39 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr20:62,277,160
INFO 2026-06-08 08:24:39 MarkDuplicates Tracking 104176 as yet unmatched pairs. 3349 records in RAM.
INFO 2026-06-08 08:24:42 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 3s. Last read position: chr20:63,563,209
INFO 2026-06-08 08:24:42 MarkDuplicates Tracking 103213 as yet unmatched pairs. 2385 records in RAM.
INFO 2026-06-08 08:24:44 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 1s. Last read position: chr20:64,070,512
INFO 2026-06-08 08:24:44 MarkDuplicates Tracking 100963 as yet unmatched pairs. 134 records in RAM.
INFO 2026-06-08 08:24:46 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr21:8,208,179
INFO 2026-06-08 08:24:46 MarkDuplicates Tracking 100286 as yet unmatched pairs. 29786 records in RAM.
INFO 2026-06-08 08:24:47 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr21:8,213,364
INFO 2026-06-08 08:24:47 MarkDuplicates Tracking 99371 as yet unmatched pairs. 28870 records in RAM.
INFO 2026-06-08 08:24:48 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr21:8,215,991
INFO 2026-06-08 08:24:48 MarkDuplicates Tracking 98663 as yet unmatched pairs. 28162 records in RAM.
INFO 2026-06-08 08:24:49 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr21:8,216,095
INFO 2026-06-08 08:24:49 MarkDuplicates Tracking 96888 as yet unmatched pairs. 26372 records in RAM.
INFO 2026-06-08 08:24:51 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr21:8,216,992
INFO 2026-06-08 08:24:51 MarkDuplicates Tracking 94124 as yet unmatched pairs. 23603 records in RAM.
INFO 2026-06-08 08:24:52 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr21:8,217,961
INFO 2026-06-08 08:24:52 MarkDuplicates Tracking 92478 as yet unmatched pairs. 21957 records in RAM.
INFO 2026-06-08 08:24:54 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr21:8,256,711
INFO 2026-06-08 08:24:54 MarkDuplicates Tracking 91657 as yet unmatched pairs. 21136 records in RAM.
INFO 2026-06-08 08:24:55 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 1s. Last read position: chr21:8,258,957
INFO 2026-06-08 08:24:55 MarkDuplicates Tracking 91331 as yet unmatched pairs. 20810 records in RAM.
INFO 2026-06-08 08:24:56 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr21:8,260,280
INFO 2026-06-08 08:24:56 MarkDuplicates Tracking 90584 as yet unmatched pairs. 20063 records in RAM.
INFO 2026-06-08 08:24:57 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr21:8,395,953
INFO 2026-06-08 08:24:57 MarkDuplicates Tracking 89590 as yet unmatched pairs. 19069 records in RAM.
INFO 2026-06-08 08:24:59 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr21:8,399,029
INFO 2026-06-08 08:24:59 MarkDuplicates Tracking 89686 as yet unmatched pairs. 19161 records in RAM.
INFO 2026-06-08 08:25:00 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr21:8,399,493
INFO 2026-06-08 08:25:00 MarkDuplicates Tracking 88779 as yet unmatched pairs. 18251 records in RAM.
INFO 2026-06-08 08:25:02 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 1s. Last read position: chr21:8,400,057
INFO 2026-06-08 08:25:02 MarkDuplicates Tracking 84379 as yet unmatched pairs. 13851 records in RAM.
INFO 2026-06-08 08:25:04 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr21:8,435,371
INFO 2026-06-08 08:25:04 MarkDuplicates Tracking 82489 as yet unmatched pairs. 11956 records in RAM.
INFO 2026-06-08 08:25:05 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 1s. Last read position: chr21:8,440,520
INFO 2026-06-08 08:25:05 MarkDuplicates Tracking 82608 as yet unmatched pairs. 12075 records in RAM.
INFO 2026-06-08 08:25:08 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 2s. Last read position: chr21:8,442,037
INFO 2026-06-08 08:25:08 MarkDuplicates Tracking 81687 as yet unmatched pairs. 11153 records in RAM.
INFO 2026-06-08 08:25:10 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 2s. Last read position: chr21:8,444,106
INFO 2026-06-08 08:25:10 MarkDuplicates Tracking 80200 as yet unmatched pairs. 9666 records in RAM.
INFO 2026-06-08 08:25:11 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: chr21:8,444,447
INFO 2026-06-08 08:25:11 MarkDuplicates Tracking 81137 as yet unmatched pairs. 10603 records in RAM.
INFO 2026-06-08 08:25:12 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: chr21:8,445,922
INFO 2026-06-08 08:25:12 MarkDuplicates Tracking 77640 as yet unmatched pairs. 7106 records in RAM.
INFO 2026-06-08 08:25:14 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 1s. Last read position: chr21:32,329,490
INFO 2026-06-08 08:25:14 MarkDuplicates Tracking 75033 as yet unmatched pairs. 4499 records in RAM.
INFO 2026-06-08 08:25:15 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr21:37,108,436
INFO 2026-06-08 08:25:15 MarkDuplicates Tracking 73793 as yet unmatched pairs. 3259 records in RAM.
INFO 2026-06-08 08:25:17 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 2s. Last read position: chr21:43,418,259
INFO 2026-06-08 08:25:17 MarkDuplicates Tracking 73028 as yet unmatched pairs. 2494 records in RAM.
INFO 2026-06-08 08:25:21 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 3s. Last read position: chr21:44,771,410
INFO 2026-06-08 08:25:21 MarkDuplicates Tracking 71970 as yet unmatched pairs. 1427 records in RAM.
INFO 2026-06-08 08:25:26 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 5s. Last read position: chr22:17,688,992
INFO 2026-06-08 08:25:26 MarkDuplicates Tracking 70463 as yet unmatched pairs. 16889 records in RAM.
INFO 2026-06-08 08:25:28 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 1s. Last read position: chr22:20,917,918
INFO 2026-06-08 08:25:28 MarkDuplicates Tracking 69521 as yet unmatched pairs. 15947 records in RAM.
INFO 2026-06-08 08:25:29 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 1s. Last read position: chr22:23,834,171
INFO 2026-06-08 08:25:29 MarkDuplicates Tracking 68066 as yet unmatched pairs. 14492 records in RAM.
INFO 2026-06-08 08:25:31 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 1s. Last read position: chr22:28,800,396
INFO 2026-06-08 08:25:31 MarkDuplicates Tracking 67428 as yet unmatched pairs. 13854 records in RAM.
INFO 2026-06-08 08:25:33 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 1s. Last read position: chr22:29,636,758
INFO 2026-06-08 08:25:33 MarkDuplicates Tracking 65784 as yet unmatched pairs. 12210 records in RAM.
INFO 2026-06-08 08:25:35 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr22:33,650,445
INFO 2026-06-08 08:25:35 MarkDuplicates Tracking 65065 as yet unmatched pairs. 11491 records in RAM.
INFO 2026-06-08 08:25:36 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 1s. Last read position: chr22:37,126,808
INFO 2026-06-08 08:25:36 MarkDuplicates Tracking 63918 as yet unmatched pairs. 10344 records in RAM.
INFO 2026-06-08 08:25:38 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 1s. Last read position: chr22:37,967,106
INFO 2026-06-08 08:25:38 MarkDuplicates Tracking 62417 as yet unmatched pairs. 8842 records in RAM.
INFO 2026-06-08 08:25:41 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 2s. Last read position: chr22:39,426,642
INFO 2026-06-08 08:25:41 MarkDuplicates Tracking 61073 as yet unmatched pairs. 7497 records in RAM.
INFO 2026-06-08 08:25:43 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 1s. Last read position: chr22:41,264,677
INFO 2026-06-08 08:25:43 MarkDuplicates Tracking 59874 as yet unmatched pairs. 6298 records in RAM.
INFO 2026-06-08 08:25:44 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 1s. Last read position: chr22:41,926,708
INFO 2026-06-08 08:25:44 MarkDuplicates Tracking 58725 as yet unmatched pairs. 5149 records in RAM.
INFO 2026-06-08 08:25:46 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 1s. Last read position: chr22:46,273,824
INFO 2026-06-08 08:25:46 MarkDuplicates Tracking 57492 as yet unmatched pairs. 3914 records in RAM.
INFO 2026-06-08 08:25:48 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 1s. Last read position: chr22:50,280,620
INFO 2026-06-08 08:25:48 MarkDuplicates Tracking 56038 as yet unmatched pairs. 2460 records in RAM.
INFO 2026-06-08 08:25:50 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 2s. Last read position: chr22:50,529,347
INFO 2026-06-08 08:25:50 MarkDuplicates Tracking 54792 as yet unmatched pairs. 1214 records in RAM.
INFO 2026-06-08 08:25:52 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:15:21s. Time for last 1,000,000: 1s. Last read position: chrX:2,691,376
INFO 2026-06-08 08:25:52 MarkDuplicates Tracking 53645 as yet unmatched pairs. 13525 records in RAM.
INFO 2026-06-08 08:25:54 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:15:23s. Time for last 1,000,000: 1s. Last read position: chrX:19,569,177
INFO 2026-06-08 08:25:54 MarkDuplicates Tracking 51996 as yet unmatched pairs. 11854 records in RAM.
INFO 2026-06-08 08:25:56 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:15:25s. Time for last 1,000,000: 1s. Last read position: chrX:40,074,392
INFO 2026-06-08 08:25:56 MarkDuplicates Tracking 51045 as yet unmatched pairs. 10900 records in RAM.
INFO 2026-06-08 08:25:57 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:15:26s. Time for last 1,000,000: 1s. Last read position: chrX:47,224,502
INFO 2026-06-08 08:25:57 MarkDuplicates Tracking 50003 as yet unmatched pairs. 9855 records in RAM.
INFO 2026-06-08 08:25:59 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 1s. Last read position: chrX:49,039,390
INFO 2026-06-08 08:25:59 MarkDuplicates Tracking 49867 as yet unmatched pairs. 9719 records in RAM.
INFO 2026-06-08 08:26:01 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:15:30s. Time for last 1,000,000: 1s. Last read position: chrX:53,593,363
INFO 2026-06-08 08:26:01 MarkDuplicates Tracking 48377 as yet unmatched pairs. 8228 records in RAM.
INFO 2026-06-08 08:26:03 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:15:32s. Time for last 1,000,000: 2s. Last read position: chrX:70,406,099
INFO 2026-06-08 08:26:03 MarkDuplicates Tracking 46728 as yet unmatched pairs. 6579 records in RAM.
INFO 2026-06-08 08:26:05 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:15:34s. Time for last 1,000,000: 1s. Last read position: chrX:72,273,937
INFO 2026-06-08 08:26:05 MarkDuplicates Tracking 46229 as yet unmatched pairs. 6080 records in RAM.
INFO 2026-06-08 08:26:07 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:15:36s. Time for last 1,000,000: 1s. Last read position: chrX:81,315,196
INFO 2026-06-08 08:26:07 MarkDuplicates Tracking 44884 as yet unmatched pairs. 4735 records in RAM.
INFO 2026-06-08 08:26:09 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:15:38s. Time for last 1,000,000: 1s. Last read position: chrX:119,469,806
INFO 2026-06-08 08:26:09 MarkDuplicates Tracking 44582 as yet unmatched pairs. 4432 records in RAM.
INFO 2026-06-08 08:26:11 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:15:40s. Time for last 1,000,000: 2s. Last read position: chrX:134,423,360
INFO 2026-06-08 08:26:11 MarkDuplicates Tracking 43277 as yet unmatched pairs. 3127 records in RAM.
INFO 2026-06-08 08:26:13 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:15:42s. Time for last 1,000,000: 1s. Last read position: chrX:153,913,864
INFO 2026-06-08 08:26:13 MarkDuplicates Tracking 42671 as yet unmatched pairs. 2518 records in RAM.
INFO 2026-06-08 08:26:15 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:15:44s. Time for last 1,000,000: 1s. Last read position: chrX:154,398,501
INFO 2026-06-08 08:26:15 MarkDuplicates Tracking 41755 as yet unmatched pairs. 1602 records in RAM.
INFO 2026-06-08 08:26:16 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:15:45s. Time for last 1,000,000: 1s. Last read position: chrY:12,812,891
INFO 2026-06-08 08:26:16 MarkDuplicates Tracking 40080 as yet unmatched pairs. 460 records in RAM.
INFO 2026-06-08 08:26:18 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:15:47s. Time for last 1,000,000: 1s. Last read position: GL000195.1:145,461
INFO 2026-06-08 08:26:18 MarkDuplicates Tracking 39306 as yet unmatched pairs. 5 records in RAM.
INFO 2026-06-08 08:26:19 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:15:48s. Time for last 1,000,000: 1s. Last read position: GL000220.1:112,471
INFO 2026-06-08 08:26:19 MarkDuplicates Tracking 38875 as yet unmatched pairs. 3959 records in RAM.
INFO 2026-06-08 08:26:20 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:15:49s. Time for last 1,000,000: 1s. Last read position: GL000220.1:114,159
INFO 2026-06-08 08:26:20 MarkDuplicates Tracking 37872 as yet unmatched pairs. 2956 records in RAM.
INFO 2026-06-08 08:26:22 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:15:51s. Time for last 1,000,000: 1s. Last read position: GL000220.1:115,560
INFO 2026-06-08 08:26:22 MarkDuplicates Tracking 36067 as yet unmatched pairs. 1151 records in RAM.
INFO 2026-06-08 08:26:24 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:15:53s. Time for last 1,000,000: 2s. Last read position: GL000220.1:116,481
INFO 2026-06-08 08:26:24 MarkDuplicates Tracking 36098 as yet unmatched pairs. 1182 records in RAM.
INFO 2026-06-08 08:26:26 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:15:55s. Time for last 1,000,000: 1s. Last read position: GL000220.1:151,484
INFO 2026-06-08 08:26:26 MarkDuplicates Tracking 36107 as yet unmatched pairs. 1191 records in RAM.
INFO 2026-06-08 08:26:27 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:15:56s. Time for last 1,000,000: 1s. Last read position: GL000220.1:156,674
INFO 2026-06-08 08:26:27 MarkDuplicates Tracking 36068 as yet unmatched pairs. 1152 records in RAM.
INFO 2026-06-08 08:26:29 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:15:58s. Time for last 1,000,000: 1s. Last read position: GL000220.1:158,173
INFO 2026-06-08 08:26:29 MarkDuplicates Tracking 36020 as yet unmatched pairs. 1104 records in RAM.
INFO 2026-06-08 08:26:31 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:15:59s. Time for last 1,000,000: 1s. Last read position: GL000220.1:160,269
INFO 2026-06-08 08:26:31 MarkDuplicates Tracking 35008 as yet unmatched pairs. 92 records in RAM.
INFO 2026-06-08 08:26:32 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:16:01s. Time for last 1,000,000: 1s. Last read position: GL000220.1:160,604
INFO 2026-06-08 08:26:32 MarkDuplicates Tracking 34941 as yet unmatched pairs. 25 records in RAM.
INFO 2026-06-08 08:26:34 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:16:03s. Time for last 1,000,000: 2s. Last read position: KI270733.1:124,652
INFO 2026-06-08 08:26:34 MarkDuplicates Tracking 34718 as yet unmatched pairs. 34711 records in RAM.
INFO 2026-06-08 08:26:35 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:16:04s. Time for last 1,000,000: 1s. Last read position: KI270733.1:129,598
INFO 2026-06-08 08:26:35 MarkDuplicates Tracking 34410 as yet unmatched pairs. 34403 records in RAM.
INFO 2026-06-08 08:26:36 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:16:05s. Time for last 1,000,000: 1s. Last read position: KI270733.1:129,925
INFO 2026-06-08 08:26:36 MarkDuplicates Tracking 35950 as yet unmatched pairs. 35943 records in RAM.
INFO 2026-06-08 08:26:38 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:16:06s. Time for last 1,000,000: 1s. Last read position: KI270733.1:132,304
INFO 2026-06-08 08:26:38 MarkDuplicates Tracking 29385 as yet unmatched pairs. 29378 records in RAM.
INFO 2026-06-08 08:26:39 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:16:08s. Time for last 1,000,000: 1s. Last read position: KI270733.1:133,181
INFO 2026-06-08 08:26:39 MarkDuplicates Tracking 27730 as yet unmatched pairs. 27723 records in RAM.
INFO 2026-06-08 08:26:40 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:16:09s. Time for last 1,000,000: 1s. Last read position: KI270733.1:133,663
INFO 2026-06-08 08:26:40 MarkDuplicates Tracking 25003 as yet unmatched pairs. 24996 records in RAM.
INFO 2026-06-08 08:26:42 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:16:11s. Time for last 1,000,000: 2s. Last read position: KI270733.1:173,129
INFO 2026-06-08 08:26:42 MarkDuplicates Tracking 33336 as yet unmatched pairs. 33329 records in RAM.
INFO 2026-06-08 08:26:44 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:16:13s. Time for last 1,000,000: 1s. Last read position: KI270733.1:174,685
INFO 2026-06-08 08:26:44 MarkDuplicates Tracking 74224 as yet unmatched pairs. 74217 records in RAM.
INFO 2026-06-08 08:26:46 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:16:15s. Time for last 1,000,000: 2s. Last read position: KI270733.1:175,021
INFO 2026-06-08 08:26:46 MarkDuplicates Tracking 6170 as yet unmatched pairs. 6163 records in RAM.
INFO 2026-06-08 08:26:48 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:16:17s. Time for last 1,000,000: 1s. Last read position: KI270733.1:177,393
INFO 2026-06-08 08:26:48 MarkDuplicates Tracking 472 as yet unmatched pairs. 465 records in RAM.
INFO 2026-06-08 08:26:49 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:16:18s. Time for last 1,000,000: 1s. Last read position: KI270733.1:178,267
INFO 2026-06-08 08:26:49 MarkDuplicates Tracking 71 as yet unmatched pairs. 64 records in RAM.
INFO 2026-06-08 08:26:50 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:16:19s. Time for last 1,000,000: 1s. Last read position: KI270733.1:178,759
INFO 2026-06-08 08:26:50 MarkDuplicates Tracking 10 as yet unmatched pairs. 3 records in RAM.
INFO 2026-06-08 08:26:50 MarkDuplicates Read 524174087 records. 0 pairs never matched.
INFO 2026-06-08 08:28:00 MarkDuplicates After buildSortedReadEndLists freeMemory: 42698357504; totalMemory: 60968402944; maxMemory: 63585648640
INFO 2026-06-08 08:28:00 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 08:28:09 MarkDuplicates Traversing read pair information and detecting duplicates.
INFO 2026-06-08 08:28:28 OpticalDuplicateFinder Large duplicate set. size = 1235
INFO 2026-06-08 08:28:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,447
INFO 2026-06-08 08:28:28 OpticalDuplicateFinder Large duplicate set. size = 1367
INFO 2026-06-08 08:28:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,962
INFO 2026-06-08 08:28:29 OpticalDuplicateFinder Large duplicate set. size = 2225
INFO 2026-06-08 08:28:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,435
INFO 2026-06-08 08:28:29 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,030
INFO 2026-06-08 08:28:29 OpticalDuplicateFinder Large duplicate set. size = 1324
INFO 2026-06-08 08:28:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,400
INFO 2026-06-08 08:28:39 OpticalDuplicateFinder Large duplicate set. size = 1485
INFO 2026-06-08 08:28:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,406
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder Large duplicate set. size = 1133
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,527
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder Large duplicate set. size = 1203
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,073
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder Large duplicate set. size = 1139
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,443
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder Large duplicate set. size = 1156
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,494
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder Large duplicate set. size = 1713
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,794
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder Large duplicate set. size = 1452
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,285
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder Large duplicate set. size = 1170
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,321
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder Large duplicate set. size = 1111
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,585
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder Large duplicate set. size = 1527
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,055
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder Large duplicate set. size = 1239
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,348
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder Large duplicate set. size = 1051
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,221
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder Large duplicate set. size = 1367
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,753
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder Large duplicate set. size = 1088
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,711
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder Large duplicate set. size = 1289
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,941
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder Large duplicate set. size = 1921
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,075
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder Large duplicate set. size = 1566
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,037
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder Large duplicate set. size = 1450
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,837
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder Large duplicate set. size = 2027
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,519
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,370
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder Large duplicate set. size = 1608
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,058
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder Large duplicate set. size = 1514
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,272
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder Large duplicate set. size = 1967
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,544
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder Large duplicate set. size = 1548
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,889
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder Large duplicate set. size = 1371
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,733
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder Large duplicate set. size = 1069
INFO 2026-06-08 08:28:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,500
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder Large duplicate set. size = 1505
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,126
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder Large duplicate set. size = 2475
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,382
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,932
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder Large duplicate set. size = 1249
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,164
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder Large duplicate set. size = 1176
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,595
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder Large duplicate set. size = 1872
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,447
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder Large duplicate set. size = 2603
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,551
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,229
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder Large duplicate set. size = 2130
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,091
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,348
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder Large duplicate set. size = 1438
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,242
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder Large duplicate set. size = 1162
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,337
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder Large duplicate set. size = 1636
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,231
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder Large duplicate set. size = 1388
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,520
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder Large duplicate set. size = 1167
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,915
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder Large duplicate set. size = 1116
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,948
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder Large duplicate set. size = 1109
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,852
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder Large duplicate set. size = 1001
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,290
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder Large duplicate set. size = 1117
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,509
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder Large duplicate set. size = 1214
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,292
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder Large duplicate set. size = 1414
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,998
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder Large duplicate set. size = 1177
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,413
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder Large duplicate set. size = 1107
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,483
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder Large duplicate set. size = 1331
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,203
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder Large duplicate set. size = 1471
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,600
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder Large duplicate set. size = 1102
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,310
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder Large duplicate set. size = 1666
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,951
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder Large duplicate set. size = 1034
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,035
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder Large duplicate set. size = 1022
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,917
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder Large duplicate set. size = 1117
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,610
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder Large duplicate set. size = 1157
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,236
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder Large duplicate set. size = 1584
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,468
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder Large duplicate set. size = 1039
INFO 2026-06-08 08:28:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,804
INFO 2026-06-08 08:29:31 OpticalDuplicateFinder Large duplicate set. size = 1089
INFO 2026-06-08 08:29:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,758
INFO 2026-06-08 08:29:32 OpticalDuplicateFinder Large duplicate set. size = 1674
INFO 2026-06-08 08:29:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,042
INFO 2026-06-08 08:29:32 OpticalDuplicateFinder Large duplicate set. size = 1449
INFO 2026-06-08 08:29:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,415
INFO 2026-06-08 08:29:32 OpticalDuplicateFinder Large duplicate set. size = 1218
INFO 2026-06-08 08:29:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,486
INFO 2026-06-08 08:29:32 OpticalDuplicateFinder Large duplicate set. size = 1055
INFO 2026-06-08 08:29:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,757
INFO 2026-06-08 08:29:32 OpticalDuplicateFinder Large duplicate set. size = 1057
INFO 2026-06-08 08:29:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,427
INFO 2026-06-08 08:29:32 OpticalDuplicateFinder Large duplicate set. size = 1078
INFO 2026-06-08 08:29:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,354
INFO 2026-06-08 08:29:32 OpticalDuplicateFinder Large duplicate set. size = 1363
INFO 2026-06-08 08:29:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,743
INFO 2026-06-08 08:29:32 OpticalDuplicateFinder Large duplicate set. size = 1769
INFO 2026-06-08 08:29:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,847
INFO 2026-06-08 08:29:33 OpticalDuplicateFinder Large duplicate set. size = 1867
INFO 2026-06-08 08:29:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,030
INFO 2026-06-08 08:29:33 OpticalDuplicateFinder Large duplicate set. size = 1170
INFO 2026-06-08 08:29:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,549
INFO 2026-06-08 08:29:38 OpticalDuplicateFinder Large duplicate set. size = 1326
INFO 2026-06-08 08:29:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,785
INFO 2026-06-08 08:29:38 OpticalDuplicateFinder Large duplicate set. size = 1026
INFO 2026-06-08 08:29:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,728
INFO 2026-06-08 08:29:38 OpticalDuplicateFinder Large duplicate set. size = 1226
INFO 2026-06-08 08:29:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,124
INFO 2026-06-08 08:29:39 OpticalDuplicateFinder Large duplicate set. size = 1323
INFO 2026-06-08 08:29:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,180
INFO 2026-06-08 08:29:39 OpticalDuplicateFinder Large duplicate set. size = 2004
INFO 2026-06-08 08:29:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,855
INFO 2026-06-08 08:29:39 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,791
INFO 2026-06-08 08:29:39 OpticalDuplicateFinder Large duplicate set. size = 2667
INFO 2026-06-08 08:29:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,249
INFO 2026-06-08 08:29:39 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,131
INFO 2026-06-08 08:29:39 OpticalDuplicateFinder Large duplicate set. size = 1264
INFO 2026-06-08 08:29:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,001
INFO 2026-06-08 08:29:39 OpticalDuplicateFinder Large duplicate set. size = 1224
INFO 2026-06-08 08:29:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,190
INFO 2026-06-08 08:29:39 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 08:29:39 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:30:35 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 08:30:38 MarkDuplicates After generateDuplicateIndexes freeMemory: 203913984; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:30:38 MarkDuplicates Marking 329768533 records as duplicates.
INFO 2026-06-08 08:30:38 MarkDuplicates Found 18280982 optical duplicate clusters.
INFO 2026-06-08 08:30:38 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 08:30:55 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:17s. Time for last 10,000,000: 17s. Last read position: chr1:29,148,442
INFO 2026-06-08 08:31:13 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:34s. Time for last 10,000,000: 17s. Last read position: chr1:100,136,881
INFO 2026-06-08 08:31:30 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:51s. Time for last 10,000,000: 17s. Last read position: chr1:155,766,388
INFO 2026-06-08 08:31:46 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:07s. Time for last 10,000,000: 15s. Last read position: chr1:219,835,071
INFO 2026-06-08 08:32:01 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:22s. Time for last 10,000,000: 14s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:32:16 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:38s. Time for last 10,000,000: 15s. Last read position: chr2:101,253,089
INFO 2026-06-08 08:32:35 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:56s. Time for last 10,000,000: 18s. Last read position: chr2:210,015,913
INFO 2026-06-08 08:32:51 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:12s. Time for last 10,000,000: 15s. Last read position: chr3:36,846,372
INFO 2026-06-08 08:33:08 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:29s. Time for last 10,000,000: 17s. Last read position: chr3:120,348,744
INFO 2026-06-08 08:33:26 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:47s. Time for last 10,000,000: 18s. Last read position: chr4:1,330,830
INFO 2026-06-08 08:33:43 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:04s. Time for last 10,000,000: 16s. Last read position: chr4:145,542,580
INFO 2026-06-08 08:33:58 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:20s. Time for last 10,000,000: 15s. Last read position: chr5:87,331,386
INFO 2026-06-08 08:34:14 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:35s. Time for last 10,000,000: 15s. Last read position: chr5:159,099,427
INFO 2026-06-08 08:34:29 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:51s. Time for last 10,000,000: 15s. Last read position: chr6:29,605,616
INFO 2026-06-08 08:34:44 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:06s. Time for last 10,000,000: 15s. Last read position: chr6:44,254,700
INFO 2026-06-08 08:35:01 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:22s. Time for last 10,000,000: 16s. Last read position: chr6:159,753,459
INFO 2026-06-08 08:35:16 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:37s. Time for last 10,000,000: 15s. Last read position: chr7:72,870,454
INFO 2026-06-08 08:35:31 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:52s. Time for last 10,000,000: 15s. Last read position: chr7:127,887,902
INFO 2026-06-08 08:35:46 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:07s. Time for last 10,000,000: 15s. Last read position: chr8:38,787,508
INFO 2026-06-08 08:36:02 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:23s. Time for last 10,000,000: 15s. Last read position: chr8:143,929,476
INFO 2026-06-08 08:36:20 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:41s. Time for last 10,000,000: 18s. Last read position: chr9:92,108,740
INFO 2026-06-08 08:36:38 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:59s. Time for last 10,000,000: 18s. Last read position: chr9:136,507,310
INFO 2026-06-08 08:36:56 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:17s. Time for last 10,000,000: 17s. Last read position: chr10:80,246,878
INFO 2026-06-08 08:37:14 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:35s. Time for last 10,000,000: 17s. Last read position: chr11:4,086,530
INFO 2026-06-08 08:37:31 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:52s. Time for last 10,000,000: 17s. Last read position: chr11:64,909,055
INFO 2026-06-08 08:37:49 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:10s. Time for last 10,000,000: 17s. Last read position: chr11:108,353,795
INFO 2026-06-08 08:38:05 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:27s. Time for last 10,000,000: 16s. Last read position: chr12:40,322,342
INFO 2026-06-08 08:38:21 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:42s. Time for last 10,000,000: 15s. Last read position: chr12:80,815,402
INFO 2026-06-08 08:38:37 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:58s. Time for last 10,000,000: 16s. Last read position: chr12:132,807,941
INFO 2026-06-08 08:38:56 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:17s. Time for last 10,000,000: 18s. Last read position: chr14:24,339,830
INFO 2026-06-08 08:39:13 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:34s. Time for last 10,000,000: 17s. Last read position: chr14:73,739,666
INFO 2026-06-08 08:39:32 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:53s. Time for last 10,000,000: 18s. Last read position: chr15:41,749,688
INFO 2026-06-08 08:39:51 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:12s. Time for last 10,000,000: 18s. Last read position: chr15:85,118,148
INFO 2026-06-08 08:40:09 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:30s. Time for last 10,000,000: 17s. Last read position: chr16:15,611,035
INFO 2026-06-08 08:40:27 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:48s. Time for last 10,000,000: 17s. Last read position: chr16:29,840,234
INFO 2026-06-08 08:40:44 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:05s. Time for last 10,000,000: 17s. Last read position: chr16:81,012,059
INFO 2026-06-08 08:41:02 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:23s. Time for last 10,000,000: 17s. Last read position: chr17:9,912,126
INFO 2026-06-08 08:41:20 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:41s. Time for last 10,000,000: 17s. Last read position: chr17:42,494,353
INFO 2026-06-08 08:41:38 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:59s. Time for last 10,000,000: 17s. Last read position: chr17:75,840,562
INFO 2026-06-08 08:41:56 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:17s. Time for last 10,000,000: 17s. Last read position: chr18:59,902,715
INFO 2026-06-08 08:42:13 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:34s. Time for last 10,000,000: 17s. Last read position: chr19:7,468,940
INFO 2026-06-08 08:42:29 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:50s. Time for last 10,000,000: 15s. Last read position: chr19:19,008,333
INFO 2026-06-08 08:42:44 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:12:05s. Time for last 10,000,000: 15s. Last read position: chr19:45,064,556
INFO 2026-06-08 08:42:59 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:12:20s. Time for last 10,000,000: 14s. Last read position: chr20:483,960
INFO 2026-06-08 08:43:14 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:35s. Time for last 10,000,000: 14s. Last read position: chr20:63,563,209
INFO 2026-06-08 08:43:27 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:49s. Time for last 10,000,000: 13s. Last read position: chr21:8,260,280
INFO 2026-06-08 08:43:41 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:13:03s. Time for last 10,000,000: 14s. Last read position: chr21:8,445,922
INFO 2026-06-08 08:43:57 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:18s. Time for last 10,000,000: 15s. Last read position: chr22:33,650,445
INFO 2026-06-08 08:44:12 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:13:34s. Time for last 10,000,000: 15s. Last read position: chrX:19,569,177
INFO 2026-06-08 08:44:28 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:13:49s. Time for last 10,000,000: 15s. Last read position: chrX:153,913,864
INFO 2026-06-08 08:44:42 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:14:03s. Time for last 10,000,000: 13s. Last read position: GL000220.1:158,173
INFO 2026-06-08 08:44:56 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:14:17s. Time for last 10,000,000: 13s. Last read position: KI270733.1:174,685
INFO 2026-06-08 08:45:12 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 08:45:12 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 08:45:12 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 08:45:12 MarkDuplicates Before output close freeMemory: 203855840; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:45:12 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 08:45:12 MarkDuplicates After output close freeMemory: 104113328; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 08:45:12 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 34.72 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory