Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/34079b33231d7fd5604b2bacd85b73/NTC_0001_0001_23H5VFLT4_s15_2.fastp.fastq.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/ensembl/Homo_sapiens.GRCh38.102.gtf
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/7d4cf9a69da2d00bc38b19be96dda2/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/b98e3c81f942c27eced3763638b9e2/kallisto
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/7d4cf9a69da2d00bc38b19be96dda2/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/34079b33231d7fd5604b2bacd85b73/NTC_0001_0001_23H5VFLT4_s15_1.fastp.fastq.gz
==> STAGING COMPLETE (6 inputs)


[quant] fragment length distribution will be estimated from the data
[index] k-mer length: 31
[index] number of targets: 194,360
[index] number of k-mers: 112,035,259
[quant] running in paired-end mode
[quant] will process pair 1: NTC_0001_0001_23H5VFLT4_s15_1.fastp.fastq.gz
                             NTC_0001_0001_23H5VFLT4_s15_2.fastp.fastq.gz
[quant] finding pseudoalignments for the reads ... done
[quant] processed 36,441 reads, 1,198 reads pseudoaligned
[quant] estimated average fragment length: 32.9026
[   em] quantifying the abundances ... done
[   em] the Expectation-Maximization algorithm ran for 542 rounds