Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT GM24385_0001_RNA_0001_23H5VFLT4_s24.Aligned.sortedByCoord.out.bam --OUTPUT GM24385_0001_RNA_0001_23H5VFLT4_s24.md.bam --METRICS_FILE GM24385_0001_RNA_0001_23H5VFLT4_s24.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:08:29.017 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:08:29 GMT 2026] MarkDuplicates --INPUT GM24385_0001_RNA_0001_23H5VFLT4_s24.Aligned.sortedByCoord.out.bam --OUTPUT GM24385_0001_RNA_0001_23H5VFLT4_s24.md.bam --METRICS_FILE GM24385_0001_RNA_0001_23H5VFLT4_s24.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:08:29 GMT 2026] Executing as ?@nf-683d0cf169990411532d33a9d0188fd4-1209f-kqlm7 on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:08:29 MarkDuplicates Start of doWork freeMemory: 105492576; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:08:29 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:08:29 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:08:33 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,319,354
INFO 2026-06-08 08:08:33 MarkDuplicates Tracking 1701 as yet unmatched pairs. 245 records in RAM.
INFO 2026-06-08 08:08:36 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:2,518,100
INFO 2026-06-08 08:08:36 MarkDuplicates Tracking 3126 as yet unmatched pairs. 101 records in RAM.
INFO 2026-06-08 08:08:38 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 2s. Last read position: chr1:8,364,746
INFO 2026-06-08 08:08:38 MarkDuplicates Tracking 4759 as yet unmatched pairs. 345 records in RAM.
INFO 2026-06-08 08:08:41 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 2s. Last read position: chr1:11,243,146
INFO 2026-06-08 08:08:41 MarkDuplicates Tracking 6098 as yet unmatched pairs. 316 records in RAM.
INFO 2026-06-08 08:08:44 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 3s. Last read position: chr1:15,848,025
INFO 2026-06-08 08:08:44 MarkDuplicates Tracking 7209 as yet unmatched pairs. 153 records in RAM.
INFO 2026-06-08 08:08:46 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 2s. Last read position: chr1:19,114,928
INFO 2026-06-08 08:08:46 MarkDuplicates Tracking 8626 as yet unmatched pairs. 560 records in RAM.
INFO 2026-06-08 08:08:49 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 2s. Last read position: chr1:21,736,479
INFO 2026-06-08 08:08:49 MarkDuplicates Tracking 9418 as yet unmatched pairs. 190 records in RAM.
INFO 2026-06-08 08:08:52 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 2s. Last read position: chr1:24,929,655
INFO 2026-06-08 08:08:52 MarkDuplicates Tracking 11177 as yet unmatched pairs. 708 records in RAM.
INFO 2026-06-08 08:08:54 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 1s. Last read position: chr1:27,282,258
INFO 2026-06-08 08:08:54 MarkDuplicates Tracking 12127 as yet unmatched pairs. 290 records in RAM.
INFO 2026-06-08 08:08:56 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 2s. Last read position: chr1:28,773,030
INFO 2026-06-08 08:08:56 MarkDuplicates Tracking 13197 as yet unmatched pairs. 67 records in RAM.
INFO 2026-06-08 08:08:58 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 2s. Last read position: chr1:32,334,776
INFO 2026-06-08 08:08:58 MarkDuplicates Tracking 14788 as yet unmatched pairs. 376 records in RAM.
INFO 2026-06-08 08:09:00 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 1s. Last read position: chr1:35,559,111
INFO 2026-06-08 08:09:00 MarkDuplicates Tracking 15820 as yet unmatched pairs. 239 records in RAM.
INFO 2026-06-08 08:09:02 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 2s. Last read position: chr1:39,333,878
INFO 2026-06-08 08:09:02 MarkDuplicates Tracking 17162 as yet unmatched pairs. 316 records in RAM.
INFO 2026-06-08 08:09:05 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 2s. Last read position: chr1:41,037,444
INFO 2026-06-08 08:09:05 MarkDuplicates Tracking 18219 as yet unmatched pairs. 213 records in RAM.
INFO 2026-06-08 08:09:08 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 2s. Last read position: chr1:44,232,221
INFO 2026-06-08 08:09:08 MarkDuplicates Tracking 19477 as yet unmatched pairs. 283 records in RAM.
INFO 2026-06-08 08:09:09 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:46,716,327
INFO 2026-06-08 08:09:09 MarkDuplicates Tracking 20809 as yet unmatched pairs. 470 records in RAM.
INFO 2026-06-08 08:09:12 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 2s. Last read position: chr1:54,174,538
INFO 2026-06-08 08:09:12 MarkDuplicates Tracking 21600 as yet unmatched pairs. 146 records in RAM.
INFO 2026-06-08 08:09:14 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 1s. Last read position: chr1:71,066,794
INFO 2026-06-08 08:09:14 MarkDuplicates Tracking 22964 as yet unmatched pairs. 437 records in RAM.
INFO 2026-06-08 08:09:16 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:86,704,682
INFO 2026-06-08 08:09:16 MarkDuplicates Tracking 23577 as yet unmatched pairs. 109 records in RAM.
INFO 2026-06-08 08:09:18 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 2s. Last read position: chr1:99,993,586
INFO 2026-06-08 08:09:18 MarkDuplicates Tracking 24654 as yet unmatched pairs. 265 records in RAM.
INFO 2026-06-08 08:09:20 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:110,891,437
INFO 2026-06-08 08:09:20 MarkDuplicates Tracking 26430 as yet unmatched pairs. 925 records in RAM.
INFO 2026-06-08 08:09:22 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:113,940,454
INFO 2026-06-08 08:09:22 MarkDuplicates Tracking 26575 as yet unmatched pairs. 119 records in RAM.
INFO 2026-06-08 08:09:24 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 2s. Last read position: chr1:119,727,070
INFO 2026-06-08 08:09:24 MarkDuplicates Tracking 28633 as yet unmatched pairs. 1072 records in RAM.
INFO 2026-06-08 08:09:26 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:146,127,040
INFO 2026-06-08 08:09:26 MarkDuplicates Tracking 28400 as yet unmatched pairs. 99 records in RAM.
INFO 2026-06-08 08:09:28 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:149,832,829
INFO 2026-06-08 08:09:28 MarkDuplicates Tracking 29753 as yet unmatched pairs. 911 records in RAM.
INFO 2026-06-08 08:09:29 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:150,578,397
INFO 2026-06-08 08:09:29 MarkDuplicates Tracking 30880 as yet unmatched pairs. 1140 records in RAM.
INFO 2026-06-08 08:09:31 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 2s. Last read position: chr1:151,763,102
INFO 2026-06-08 08:09:31 MarkDuplicates Tracking 31037 as yet unmatched pairs. 142 records in RAM.
INFO 2026-06-08 08:09:33 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 2s. Last read position: chr1:154,170,684
INFO 2026-06-08 08:09:33 MarkDuplicates Tracking 36590 as yet unmatched pairs. 4635 records in RAM.
INFO 2026-06-08 08:09:35 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:154,821,929
INFO 2026-06-08 08:09:35 MarkDuplicates Tracking 33579 as yet unmatched pairs. 441 records in RAM.
INFO 2026-06-08 08:09:37 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:155,660,456
INFO 2026-06-08 08:09:37 MarkDuplicates Tracking 34939 as yet unmatched pairs. 665 records in RAM.
INFO 2026-06-08 08:09:39 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:156,283,046
INFO 2026-06-08 08:09:39 MarkDuplicates Tracking 35535 as yet unmatched pairs. 96 records in RAM.
INFO 2026-06-08 08:09:41 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 2s. Last read position: chr1:160,240,210
INFO 2026-06-08 08:09:41 MarkDuplicates Tracking 36813 as yet unmatched pairs. 307 records in RAM.
INFO 2026-06-08 08:09:43 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:161,118,425
INFO 2026-06-08 08:09:43 MarkDuplicates Tracking 37707 as yet unmatched pairs. 251 records in RAM.
INFO 2026-06-08 08:09:45 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:168,254,589
INFO 2026-06-08 08:09:45 MarkDuplicates Tracking 38612 as yet unmatched pairs. 86 records in RAM.
INFO 2026-06-08 08:09:47 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 2s. Last read position: chr1:174,394,048
INFO 2026-06-08 08:09:47 MarkDuplicates Tracking 39787 as yet unmatched pairs. 401 records in RAM.
INFO 2026-06-08 08:09:50 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 2s. Last read position: chr1:182,860,071
INFO 2026-06-08 08:09:50 MarkDuplicates Tracking 40808 as yet unmatched pairs. 119 records in RAM.
INFO 2026-06-08 08:09:52 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 2s. Last read position: chr1:186,362,339
INFO 2026-06-08 08:09:52 MarkDuplicates Tracking 42224 as yet unmatched pairs. 660 records in RAM.
INFO 2026-06-08 08:09:54 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 2s. Last read position: chr1:202,153,780
INFO 2026-06-08 08:09:54 MarkDuplicates Tracking 43219 as yet unmatched pairs. 382 records in RAM.
INFO 2026-06-08 08:09:56 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:206,342,954
INFO 2026-06-08 08:09:56 MarkDuplicates Tracking 43902 as yet unmatched pairs. 92 records in RAM.
INFO 2026-06-08 08:09:58 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 2s. Last read position: chr1:212,858,571
INFO 2026-06-08 08:09:58 MarkDuplicates Tracking 46092 as yet unmatched pairs. 1056 records in RAM.
INFO 2026-06-08 08:10:00 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:225,406,777
INFO 2026-06-08 08:10:00 MarkDuplicates Tracking 46321 as yet unmatched pairs. 336 records in RAM.
INFO 2026-06-08 08:10:01 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:228,413,762
INFO 2026-06-08 08:10:01 MarkDuplicates Tracking 47334 as yet unmatched pairs. 34 records in RAM.
INFO 2026-06-08 08:10:03 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:235,414,557
INFO 2026-06-08 08:10:03 MarkDuplicates Tracking 49149 as yet unmatched pairs. 34 records in RAM.
INFO 2026-06-08 08:10:05 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:246,851,116
INFO 2026-06-08 08:10:05 MarkDuplicates Tracking 50403 as yet unmatched pairs. 193 records in RAM.
INFO 2026-06-08 08:10:07 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 2s. Last read position: chr2:10,058,870
INFO 2026-06-08 08:10:07 MarkDuplicates Tracking 51621 as yet unmatched pairs. 46761 records in RAM.
INFO 2026-06-08 08:10:09 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 2s. Last read position: chr2:24,252,395
INFO 2026-06-08 08:10:09 MarkDuplicates Tracking 52522 as yet unmatched pairs. 47520 records in RAM.
INFO 2026-06-08 08:10:11 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr2:27,083,067
INFO 2026-06-08 08:10:11 MarkDuplicates Tracking 53695 as yet unmatched pairs. 48575 records in RAM.
INFO 2026-06-08 08:10:13 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr2:32,089,595
INFO 2026-06-08 08:10:13 MarkDuplicates Tracking 54774 as yet unmatched pairs. 49530 records in RAM.
INFO 2026-06-08 08:10:15 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:10:15 MarkDuplicates Tracking 190522 as yet unmatched pairs. 42761 records in RAM.
INFO 2026-06-08 08:10:17 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:10:17 MarkDuplicates Tracking 497207 as yet unmatched pairs. 26608 records in RAM.
INFO 2026-06-08 08:10:18 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr2:37,105,472
INFO 2026-06-08 08:10:18 MarkDuplicates Tracking 534386 as yet unmatched pairs. 24111 records in RAM.
INFO 2026-06-08 08:10:20 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr2:43,934,190
INFO 2026-06-08 08:10:20 MarkDuplicates Tracking 533976 as yet unmatched pairs. 23593 records in RAM.
INFO 2026-06-08 08:10:22 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 2s. Last read position: chr2:54,625,998
INFO 2026-06-08 08:10:22 MarkDuplicates Tracking 532567 as yet unmatched pairs. 22076 records in RAM.
INFO 2026-06-08 08:10:24 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 2s. Last read position: chr2:58,134,679
INFO 2026-06-08 08:10:24 MarkDuplicates Tracking 532030 as yet unmatched pairs. 21455 records in RAM.
INFO 2026-06-08 08:10:26 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr2:64,961,924
INFO 2026-06-08 08:10:26 MarkDuplicates Tracking 530794 as yet unmatched pairs. 20083 records in RAM.
INFO 2026-06-08 08:10:28 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 2s. Last read position: chr2:71,365,430
INFO 2026-06-08 08:10:28 MarkDuplicates Tracking 530123 as yet unmatched pairs. 19265 records in RAM.
INFO 2026-06-08 08:10:32 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 3s. Last read position: chr2:74,462,703
INFO 2026-06-08 08:10:32 MarkDuplicates Tracking 529461 as yet unmatched pairs. 18474 records in RAM.
INFO 2026-06-08 08:10:35 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 3s. Last read position: chr2:86,147,656
INFO 2026-06-08 08:10:35 MarkDuplicates Tracking 528114 as yet unmatched pairs. 17052 records in RAM.
INFO 2026-06-08 08:10:37 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 2s. Last read position: chr2:96,281,838
INFO 2026-06-08 08:10:37 MarkDuplicates Tracking 527025 as yet unmatched pairs. 15856 records in RAM.
INFO 2026-06-08 08:10:39 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:99,404,461
INFO 2026-06-08 08:10:39 MarkDuplicates Tracking 525828 as yet unmatched pairs. 14522 records in RAM.
INFO 2026-06-08 08:10:41 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr2:109,813,568
INFO 2026-06-08 08:10:41 MarkDuplicates Tracking 525059 as yet unmatched pairs. 13696 records in RAM.
INFO 2026-06-08 08:10:43 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr2:119,245,618
INFO 2026-06-08 08:10:43 MarkDuplicates Tracking 524390 as yet unmatched pairs. 12919 records in RAM.
INFO 2026-06-08 08:10:45 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:131,443,882
INFO 2026-06-08 08:10:45 MarkDuplicates Tracking 523311 as yet unmatched pairs. 11715 records in RAM.
INFO 2026-06-08 08:10:47 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:151,464,266
INFO 2026-06-08 08:10:47 MarkDuplicates Tracking 522882 as yet unmatched pairs. 11124 records in RAM.
INFO 2026-06-08 08:10:49 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 2s. Last read position: chr2:164,461,459
INFO 2026-06-08 08:10:49 MarkDuplicates Tracking 522079 as yet unmatched pairs. 10185 records in RAM.
INFO 2026-06-08 08:10:52 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 3s. Last read position: chr2:174,572,264
INFO 2026-06-08 08:10:52 MarkDuplicates Tracking 521572 as yet unmatched pairs. 9466 records in RAM.
INFO 2026-06-08 08:10:54 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 2s. Last read position: chr2:178,768,886
INFO 2026-06-08 08:10:54 MarkDuplicates Tracking 520894 as yet unmatched pairs. 8694 records in RAM.
INFO 2026-06-08 08:10:56 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:190,930,508
INFO 2026-06-08 08:10:56 MarkDuplicates Tracking 521210 as yet unmatched pairs. 8877 records in RAM.
INFO 2026-06-08 08:10:58 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 2s. Last read position: chr2:197,706,817
INFO 2026-06-08 08:10:58 MarkDuplicates Tracking 519284 as yet unmatched pairs. 6800 records in RAM.
INFO 2026-06-08 08:11:00 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:207,570,177
INFO 2026-06-08 08:11:00 MarkDuplicates Tracking 519266 as yet unmatched pairs. 6659 records in RAM.
INFO 2026-06-08 08:11:02 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:218,272,693
INFO 2026-06-08 08:11:02 MarkDuplicates Tracking 517898 as yet unmatched pairs. 5163 records in RAM.
INFO 2026-06-08 08:11:04 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 2s. Last read position: chr2:223,882,919
INFO 2026-06-08 08:11:04 MarkDuplicates Tracking 516641 as yet unmatched pairs. 3722 records in RAM.
INFO 2026-06-08 08:11:06 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:230,865,062
INFO 2026-06-08 08:11:06 MarkDuplicates Tracking 516606 as yet unmatched pairs. 3549 records in RAM.
INFO 2026-06-08 08:11:07 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:233,434,890
INFO 2026-06-08 08:11:07 MarkDuplicates Tracking 515254 as yet unmatched pairs. 2066 records in RAM.
INFO 2026-06-08 08:11:09 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr2:241,235,569
INFO 2026-06-08 08:11:09 MarkDuplicates Tracking 514031 as yet unmatched pairs. 708 records in RAM.
INFO 2026-06-08 08:11:12 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 2s. Last read position: chr3:5,188,087
INFO 2026-06-08 08:11:12 MarkDuplicates Tracking 516296 as yet unmatched pairs. 27558 records in RAM.
INFO 2026-06-08 08:11:14 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 2s. Last read position: chr3:11,558,533
INFO 2026-06-08 08:11:14 MarkDuplicates Tracking 511704 as yet unmatched pairs. 22881 records in RAM.
INFO 2026-06-08 08:11:16 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 2s. Last read position: chr3:15,032,437
INFO 2026-06-08 08:11:16 MarkDuplicates Tracking 510802 as yet unmatched pairs. 21859 records in RAM.
INFO 2026-06-08 08:11:18 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr3:16,897,186
INFO 2026-06-08 08:11:18 MarkDuplicates Tracking 510182 as yet unmatched pairs. 21142 records in RAM.
INFO 2026-06-08 08:11:20 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 2s. Last read position: chr3:33,132,587
INFO 2026-06-08 08:11:20 MarkDuplicates Tracking 509410 as yet unmatched pairs. 20184 records in RAM.
INFO 2026-06-08 08:11:23 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 2s. Last read position: chr3:40,311,489
INFO 2026-06-08 08:11:23 MarkDuplicates Tracking 508604 as yet unmatched pairs. 19285 records in RAM.
INFO 2026-06-08 08:11:25 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr3:46,786,056
INFO 2026-06-08 08:11:25 MarkDuplicates Tracking 507559 as yet unmatched pairs. 18165 records in RAM.
INFO 2026-06-08 08:11:27 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr3:47,676,665
INFO 2026-06-08 08:11:27 MarkDuplicates Tracking 506516 as yet unmatched pairs. 17006 records in RAM.
INFO 2026-06-08 08:11:29 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr3:49,013,400
INFO 2026-06-08 08:11:29 MarkDuplicates Tracking 506478 as yet unmatched pairs. 16831 records in RAM.
INFO 2026-06-08 08:11:31 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr3:49,723,598
INFO 2026-06-08 08:11:31 MarkDuplicates Tracking 504521 as yet unmatched pairs. 14798 records in RAM.
INFO 2026-06-08 08:11:33 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr3:51,993,838
INFO 2026-06-08 08:11:33 MarkDuplicates Tracking 504035 as yet unmatched pairs. 14220 records in RAM.
INFO 2026-06-08 08:11:35 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr3:53,189,047
INFO 2026-06-08 08:11:35 MarkDuplicates Tracking 502611 as yet unmatched pairs. 12691 records in RAM.
INFO 2026-06-08 08:11:36 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr3:64,736,203
INFO 2026-06-08 08:11:36 MarkDuplicates Tracking 501398 as yet unmatched pairs. 11350 records in RAM.
INFO 2026-06-08 08:11:38 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr3:101,671,272
INFO 2026-06-08 08:11:38 MarkDuplicates Tracking 500683 as yet unmatched pairs. 10472 records in RAM.
INFO 2026-06-08 08:11:40 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr3:119,390,848
INFO 2026-06-08 08:11:40 MarkDuplicates Tracking 500151 as yet unmatched pairs. 9824 records in RAM.
INFO 2026-06-08 08:11:42 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr3:122,680,927
INFO 2026-06-08 08:11:42 MarkDuplicates Tracking 499493 as yet unmatched pairs. 9090 records in RAM.
INFO 2026-06-08 08:11:43 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr3:128,052,480
INFO 2026-06-08 08:11:43 MarkDuplicates Tracking 498873 as yet unmatched pairs. 8405 records in RAM.
INFO 2026-06-08 08:11:45 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr3:132,639,563
INFO 2026-06-08 08:11:45 MarkDuplicates Tracking 497295 as yet unmatched pairs. 6709 records in RAM.
INFO 2026-06-08 08:11:47 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr3:142,365,340
INFO 2026-06-08 08:11:47 MarkDuplicates Tracking 496461 as yet unmatched pairs. 5719 records in RAM.
INFO 2026-06-08 08:11:49 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr3:156,529,737
INFO 2026-06-08 08:11:49 MarkDuplicates Tracking 495535 as yet unmatched pairs. 4618 records in RAM.
INFO 2026-06-08 08:11:51 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr3:172,106,121
INFO 2026-06-08 08:11:51 MarkDuplicates Tracking 495173 as yet unmatched pairs. 4095 records in RAM.
INFO 2026-06-08 08:11:53 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr3:183,790,836
INFO 2026-06-08 08:11:53 MarkDuplicates Tracking 494073 as yet unmatched pairs. 2892 records in RAM.
INFO 2026-06-08 08:11:55 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 2s. Last read position: chr3:187,001,750
INFO 2026-06-08 08:11:55 MarkDuplicates Tracking 493078 as yet unmatched pairs. 1831 records in RAM.
INFO 2026-06-08 08:11:57 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 2s. Last read position: chr3:196,461,240
INFO 2026-06-08 08:11:57 MarkDuplicates Tracking 491980 as yet unmatched pairs. 642 records in RAM.
INFO 2026-06-08 08:12:00 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 2s. Last read position: chr4:957,851
INFO 2026-06-08 08:12:00 MarkDuplicates Tracking 491286 as yet unmatched pairs. 13823 records in RAM.
INFO 2026-06-08 08:12:01 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr4:2,513,748
INFO 2026-06-08 08:12:01 MarkDuplicates Tracking 489785 as yet unmatched pairs. 12231 records in RAM.
INFO 2026-06-08 08:12:03 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr4:6,642,350
INFO 2026-06-08 08:12:03 MarkDuplicates Tracking 488516 as yet unmatched pairs. 10845 records in RAM.
INFO 2026-06-08 08:12:05 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr4:17,824,968
INFO 2026-06-08 08:12:05 MarkDuplicates Tracking 487520 as yet unmatched pairs. 9741 records in RAM.
INFO 2026-06-08 08:12:06 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr4:39,844,678
INFO 2026-06-08 08:12:06 MarkDuplicates Tracking 486609 as yet unmatched pairs. 8717 records in RAM.
INFO 2026-06-08 08:12:08 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr4:48,839,452
INFO 2026-06-08 08:12:08 MarkDuplicates Tracking 486282 as yet unmatched pairs. 8202 records in RAM.
INFO 2026-06-08 08:12:10 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr4:73,091,608
INFO 2026-06-08 08:12:10 MarkDuplicates Tracking 484853 as yet unmatched pairs. 6688 records in RAM.
INFO 2026-06-08 08:12:12 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr4:83,010,498
INFO 2026-06-08 08:12:12 MarkDuplicates Tracking 483915 as yet unmatched pairs. 5660 records in RAM.
INFO 2026-06-08 08:12:13 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr4:99,949,670
INFO 2026-06-08 08:12:13 MarkDuplicates Tracking 483202 as yet unmatched pairs. 4844 records in RAM.
INFO 2026-06-08 08:12:15 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr4:112,553,915
INFO 2026-06-08 08:12:15 MarkDuplicates Tracking 482204 as yet unmatched pairs. 3759 records in RAM.
INFO 2026-06-08 08:12:17 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr4:139,698,176
INFO 2026-06-08 08:12:17 MarkDuplicates Tracking 481501 as yet unmatched pairs. 2958 records in RAM.
INFO 2026-06-08 08:12:19 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr4:151,103,016
INFO 2026-06-08 08:12:19 MarkDuplicates Tracking 483385 as yet unmatched pairs. 4749 records in RAM.
INFO 2026-06-08 08:12:20 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr4:168,384,304
INFO 2026-06-08 08:12:20 MarkDuplicates Tracking 479948 as yet unmatched pairs. 1194 records in RAM.
INFO 2026-06-08 08:12:22 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr5:271,762
INFO 2026-06-08 08:12:22 MarkDuplicates Tracking 479026 as yet unmatched pairs. 23626 records in RAM.
INFO 2026-06-08 08:12:24 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr5:10,397,307
INFO 2026-06-08 08:12:24 MarkDuplicates Tracking 477877 as yet unmatched pairs. 22381 records in RAM.
INFO 2026-06-08 08:12:25 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr5:14,419,909
INFO 2026-06-08 08:12:25 MarkDuplicates Tracking 478425 as yet unmatched pairs. 22790 records in RAM.
INFO 2026-06-08 08:12:27 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 2s. Last read position: chr5:33,162,177
INFO 2026-06-08 08:12:27 MarkDuplicates Tracking 475185 as yet unmatched pairs. 19450 records in RAM.
INFO 2026-06-08 08:12:29 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr5:44,809,130
INFO 2026-06-08 08:12:29 MarkDuplicates Tracking 474724 as yet unmatched pairs. 18872 records in RAM.
INFO 2026-06-08 08:12:31 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr5:66,164,736
INFO 2026-06-08 08:12:31 MarkDuplicates Tracking 473827 as yet unmatched pairs. 17889 records in RAM.
INFO 2026-06-08 08:12:34 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 2s. Last read position: chr5:72,305,322
INFO 2026-06-08 08:12:34 MarkDuplicates Tracking 473444 as yet unmatched pairs. 17457 records in RAM.
INFO 2026-06-08 08:12:35 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr5:81,706,664
INFO 2026-06-08 08:12:35 MarkDuplicates Tracking 472605 as yet unmatched pairs. 16492 records in RAM.
INFO 2026-06-08 08:12:37 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 2s. Last read position: chr5:96,803,523
INFO 2026-06-08 08:12:37 MarkDuplicates Tracking 472174 as yet unmatched pairs. 15951 records in RAM.
INFO 2026-06-08 08:12:40 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 2s. Last read position: chr5:115,616,339
INFO 2026-06-08 08:12:40 MarkDuplicates Tracking 471250 as yet unmatched pairs. 14884 records in RAM.
INFO 2026-06-08 08:12:41 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr5:132,589,822
INFO 2026-06-08 08:12:41 MarkDuplicates Tracking 470565 as yet unmatched pairs. 14081 records in RAM.
INFO 2026-06-08 08:12:43 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr5:138,352,860
INFO 2026-06-08 08:12:43 MarkDuplicates Tracking 470025 as yet unmatched pairs. 13449 records in RAM.
INFO 2026-06-08 08:12:45 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr5:140,552,073
INFO 2026-06-08 08:12:45 MarkDuplicates Tracking 469125 as yet unmatched pairs. 12309 records in RAM.
INFO 2026-06-08 08:12:46 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr5:146,237,316
INFO 2026-06-08 08:12:46 MarkDuplicates Tracking 467714 as yet unmatched pairs. 10831 records in RAM.
INFO 2026-06-08 08:12:48 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,241
INFO 2026-06-08 08:12:48 MarkDuplicates Tracking 498113 as yet unmatched pairs. 41132 records in RAM.
INFO 2026-06-08 08:12:50 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr5:150,405,152
INFO 2026-06-08 08:12:50 MarkDuplicates Tracking 493394 as yet unmatched pairs. 36378 records in RAM.
INFO 2026-06-08 08:12:52 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr5:150,649,686
INFO 2026-06-08 08:12:52 MarkDuplicates Tracking 464765 as yet unmatched pairs. 7689 records in RAM.
INFO 2026-06-08 08:12:53 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr5:154,803,598
INFO 2026-06-08 08:12:53 MarkDuplicates Tracking 463619 as yet unmatched pairs. 6447 records in RAM.
INFO 2026-06-08 08:12:55 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr5:169,874,495
INFO 2026-06-08 08:12:55 MarkDuplicates Tracking 462949 as yet unmatched pairs. 5663 records in RAM.
INFO 2026-06-08 08:12:57 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr5:171,939,093
INFO 2026-06-08 08:12:57 MarkDuplicates Tracking 462112 as yet unmatched pairs. 4736 records in RAM.
INFO 2026-06-08 08:12:58 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr5:177,303,861
INFO 2026-06-08 08:12:58 MarkDuplicates Tracking 461306 as yet unmatched pairs. 3846 records in RAM.
INFO 2026-06-08 08:13:00 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr5:178,712,780
INFO 2026-06-08 08:13:00 MarkDuplicates Tracking 459697 as yet unmatched pairs. 2153 records in RAM.
INFO 2026-06-08 08:13:02 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr5:179,836,641
INFO 2026-06-08 08:13:02 MarkDuplicates Tracking 458618 as yet unmatched pairs. 941 records in RAM.
INFO 2026-06-08 08:13:04 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr6:673,810
INFO 2026-06-08 08:13:04 MarkDuplicates Tracking 457385 as yet unmatched pairs. 28412 records in RAM.
INFO 2026-06-08 08:13:05 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr6:7,297,986
INFO 2026-06-08 08:13:05 MarkDuplicates Tracking 456529 as yet unmatched pairs. 27432 records in RAM.
INFO 2026-06-08 08:13:07 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr6:16,328,171
INFO 2026-06-08 08:13:07 MarkDuplicates Tracking 455259 as yet unmatched pairs. 26022 records in RAM.
INFO 2026-06-08 08:13:09 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr6:26,124,326
INFO 2026-06-08 08:13:09 MarkDuplicates Tracking 455536 as yet unmatched pairs. 26176 records in RAM.
INFO 2026-06-08 08:13:11 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 2s. Last read position: chr6:27,810,269
INFO 2026-06-08 08:13:11 MarkDuplicates Tracking 454490 as yet unmatched pairs. 25033 records in RAM.
INFO 2026-06-08 08:13:13 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 2s. Last read position: chr6:30,007,569
INFO 2026-06-08 08:13:13 MarkDuplicates Tracking 452363 as yet unmatched pairs. 22859 records in RAM.
INFO 2026-06-08 08:13:16 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 2s. Last read position: chr6:30,922,929
INFO 2026-06-08 08:13:16 MarkDuplicates Tracking 451407 as yet unmatched pairs. 21845 records in RAM.
INFO 2026-06-08 08:13:18 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr6:31,628,116
INFO 2026-06-08 08:13:18 MarkDuplicates Tracking 450691 as yet unmatched pairs. 21058 records in RAM.
INFO 2026-06-08 08:13:19 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr6:31,896,874
INFO 2026-06-08 08:13:19 MarkDuplicates Tracking 449283 as yet unmatched pairs. 19595 records in RAM.
INFO 2026-06-08 08:13:21 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr6:32,835,311
INFO 2026-06-08 08:13:21 MarkDuplicates Tracking 448736 as yet unmatched pairs. 18983 records in RAM.
INFO 2026-06-08 08:13:23 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr6:33,086,605
INFO 2026-06-08 08:13:23 MarkDuplicates Tracking 447792 as yet unmatched pairs. 17972 records in RAM.
INFO 2026-06-08 08:13:25 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr6:33,443,263
INFO 2026-06-08 08:13:25 MarkDuplicates Tracking 446263 as yet unmatched pairs. 16405 records in RAM.
INFO 2026-06-08 08:13:27 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr6:36,596,948
INFO 2026-06-08 08:13:27 MarkDuplicates Tracking 445284 as yet unmatched pairs. 15300 records in RAM.
INFO 2026-06-08 08:13:29 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr6:42,051,454
INFO 2026-06-08 08:13:29 MarkDuplicates Tracking 443984 as yet unmatched pairs. 13907 records in RAM.
INFO 2026-06-08 08:13:31 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 2s. Last read position: chr6:43,369,206
INFO 2026-06-08 08:13:31 MarkDuplicates Tracking 444110 as yet unmatched pairs. 13994 records in RAM.
INFO 2026-06-08 08:13:33 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr6:52,269,158
INFO 2026-06-08 08:13:33 MarkDuplicates Tracking 441342 as yet unmatched pairs. 11159 records in RAM.
INFO 2026-06-08 08:13:34 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr6:56,633,013
INFO 2026-06-08 08:13:34 MarkDuplicates Tracking 441060 as yet unmatched pairs. 10749 records in RAM.
INFO 2026-06-08 08:13:36 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr6:73,518,392
INFO 2026-06-08 08:13:36 MarkDuplicates Tracking 440972 as yet unmatched pairs. 10516 records in RAM.
INFO 2026-06-08 08:13:38 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr6:87,256,184
INFO 2026-06-08 08:13:38 MarkDuplicates Tracking 439441 as yet unmatched pairs. 8900 records in RAM.
INFO 2026-06-08 08:13:40 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr6:100,540,237
INFO 2026-06-08 08:13:40 MarkDuplicates Tracking 438257 as yet unmatched pairs. 7647 records in RAM.
INFO 2026-06-08 08:13:42 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr6:111,367,622
INFO 2026-06-08 08:13:42 MarkDuplicates Tracking 437467 as yet unmatched pairs. 6757 records in RAM.
INFO 2026-06-08 08:13:43 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr6:125,956,972
INFO 2026-06-08 08:13:43 MarkDuplicates Tracking 436280 as yet unmatched pairs. 5440 records in RAM.
INFO 2026-06-08 08:13:46 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 2s. Last read position: chr6:138,424,325
INFO 2026-06-08 08:13:46 MarkDuplicates Tracking 435421 as yet unmatched pairs. 4509 records in RAM.
INFO 2026-06-08 08:13:48 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 2s. Last read position: chr6:149,473,542
INFO 2026-06-08 08:13:48 MarkDuplicates Tracking 434656 as yet unmatched pairs. 3675 records in RAM.
INFO 2026-06-08 08:13:50 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 2s. Last read position: chr6:157,190,174
INFO 2026-06-08 08:13:50 MarkDuplicates Tracking 433237 as yet unmatched pairs. 2192 records in RAM.
INFO 2026-06-08 08:13:52 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr6:160,089,974
INFO 2026-06-08 08:13:52 MarkDuplicates Tracking 432281 as yet unmatched pairs. 1131 records in RAM.
INFO 2026-06-08 08:13:54 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr7:886,024
INFO 2026-06-08 08:13:54 MarkDuplicates Tracking 431383 as yet unmatched pairs. 28056 records in RAM.
INFO 2026-06-08 08:13:56 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr7:2,731,415
INFO 2026-06-08 08:13:56 MarkDuplicates Tracking 429711 as yet unmatched pairs. 26329 records in RAM.
INFO 2026-06-08 08:13:58 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr7:5,390,493
INFO 2026-06-08 08:13:58 MarkDuplicates Tracking 428123 as yet unmatched pairs. 24702 records in RAM.
INFO 2026-06-08 08:14:00 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr7:5,529,545
INFO 2026-06-08 08:14:00 MarkDuplicates Tracking 431897 as yet unmatched pairs. 28389 records in RAM.
INFO 2026-06-08 08:14:01 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr7:17,339,476
INFO 2026-06-08 08:14:01 MarkDuplicates Tracking 425663 as yet unmatched pairs. 22051 records in RAM.
INFO 2026-06-08 08:14:03 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr7:27,458,199
INFO 2026-06-08 08:14:03 MarkDuplicates Tracking 424664 as yet unmatched pairs. 20941 records in RAM.
INFO 2026-06-08 08:14:05 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr7:39,951,201
INFO 2026-06-08 08:14:05 MarkDuplicates Tracking 424513 as yet unmatched pairs. 20636 records in RAM.
INFO 2026-06-08 08:14:07 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr7:44,761,793
INFO 2026-06-08 08:14:07 MarkDuplicates Tracking 423365 as yet unmatched pairs. 19361 records in RAM.
INFO 2026-06-08 08:14:09 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr7:56,104,407
INFO 2026-06-08 08:14:09 MarkDuplicates Tracking 422482 as yet unmatched pairs. 18397 records in RAM.
INFO 2026-06-08 08:14:10 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr7:73,063,864
INFO 2026-06-08 08:14:10 MarkDuplicates Tracking 420988 as yet unmatched pairs. 16799 records in RAM.
INFO 2026-06-08 08:14:12 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr7:74,403,850
INFO 2026-06-08 08:14:12 MarkDuplicates Tracking 420337 as yet unmatched pairs. 16090 records in RAM.
INFO 2026-06-08 08:14:14 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr7:75,494,081
INFO 2026-06-08 08:14:14 MarkDuplicates Tracking 419680 as yet unmatched pairs. 15378 records in RAM.
INFO 2026-06-08 08:14:16 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 2s. Last read position: chr7:87,907,387
INFO 2026-06-08 08:14:16 MarkDuplicates Tracking 418733 as yet unmatched pairs. 14346 records in RAM.
INFO 2026-06-08 08:14:20 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 3s. Last read position: chr7:93,276,270
INFO 2026-06-08 08:14:20 MarkDuplicates Tracking 417957 as yet unmatched pairs. 13480 records in RAM.
INFO 2026-06-08 08:14:22 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 2s. Last read position: chr7:99,531,642
INFO 2026-06-08 08:14:22 MarkDuplicates Tracking 416920 as yet unmatched pairs. 12382 records in RAM.
INFO 2026-06-08 08:14:24 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr7:100,477,946
INFO 2026-06-08 08:14:24 MarkDuplicates Tracking 416193 as yet unmatched pairs. 11580 records in RAM.
INFO 2026-06-08 08:14:26 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr7:102,342,178
INFO 2026-06-08 08:14:26 MarkDuplicates Tracking 414329 as yet unmatched pairs. 9656 records in RAM.
INFO 2026-06-08 08:14:27 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr7:104,671,136
INFO 2026-06-08 08:14:27 MarkDuplicates Tracking 413751 as yet unmatched pairs. 9031 records in RAM.
INFO 2026-06-08 08:14:29 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr7:120,438,208
INFO 2026-06-08 08:14:29 MarkDuplicates Tracking 412997 as yet unmatched pairs. 8110 records in RAM.
INFO 2026-06-08 08:14:31 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr7:128,087,000
INFO 2026-06-08 08:14:31 MarkDuplicates Tracking 414141 as yet unmatched pairs. 9133 records in RAM.
INFO 2026-06-08 08:14:33 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr7:134,646,972
INFO 2026-06-08 08:14:33 MarkDuplicates Tracking 411332 as yet unmatched pairs. 6170 records in RAM.
INFO 2026-06-08 08:14:34 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr7:138,867,984
INFO 2026-06-08 08:14:34 MarkDuplicates Tracking 410376 as yet unmatched pairs. 5113 records in RAM.
INFO 2026-06-08 08:14:36 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr7:141,652,803
INFO 2026-06-08 08:14:36 MarkDuplicates Tracking 409571 as yet unmatched pairs. 4237 records in RAM.
INFO 2026-06-08 08:14:38 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr7:149,874,129
INFO 2026-06-08 08:14:38 MarkDuplicates Tracking 408418 as yet unmatched pairs. 3011 records in RAM.
INFO 2026-06-08 08:14:40 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr7:152,152,908
INFO 2026-06-08 08:14:40 MarkDuplicates Tracking 406661 as yet unmatched pairs. 1190 records in RAM.
INFO 2026-06-08 08:14:42 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 2s. Last read position: chr8:6,508,624
INFO 2026-06-08 08:14:42 MarkDuplicates Tracking 405676 as yet unmatched pairs. 18604 records in RAM.
INFO 2026-06-08 08:14:44 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr8:17,969,732
INFO 2026-06-08 08:14:44 MarkDuplicates Tracking 404519 as yet unmatched pairs. 17351 records in RAM.
INFO 2026-06-08 08:14:46 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr8:23,260,584
INFO 2026-06-08 08:14:46 MarkDuplicates Tracking 403247 as yet unmatched pairs. 15940 records in RAM.
INFO 2026-06-08 08:14:48 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr8:30,703,185
INFO 2026-06-08 08:14:48 MarkDuplicates Tracking 402360 as yet unmatched pairs. 14985 records in RAM.
INFO 2026-06-08 08:14:50 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr8:38,820,046
INFO 2026-06-08 08:14:50 MarkDuplicates Tracking 402676 as yet unmatched pairs. 15236 records in RAM.
INFO 2026-06-08 08:14:52 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 2s. Last read position: chr8:47,778,753
INFO 2026-06-08 08:14:52 MarkDuplicates Tracking 400344 as yet unmatched pairs. 12812 records in RAM.
INFO 2026-06-08 08:14:54 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr8:60,781,226
INFO 2026-06-08 08:14:54 MarkDuplicates Tracking 399381 as yet unmatched pairs. 11744 records in RAM.
INFO 2026-06-08 08:14:57 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 3s. Last read position: chr8:70,187,151
INFO 2026-06-08 08:14:57 MarkDuplicates Tracking 398555 as yet unmatched pairs. 10843 records in RAM.
INFO 2026-06-08 08:14:59 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 2s. Last read position: chr8:91,134,365
INFO 2026-06-08 08:14:59 MarkDuplicates Tracking 397529 as yet unmatched pairs. 9717 records in RAM.
INFO 2026-06-08 08:15:01 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr8:100,263,979
INFO 2026-06-08 08:15:01 MarkDuplicates Tracking 397016 as yet unmatched pairs. 9115 records in RAM.
INFO 2026-06-08 08:15:03 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr8:102,323,461
INFO 2026-06-08 08:15:03 MarkDuplicates Tracking 395777 as yet unmatched pairs. 7824 records in RAM.
INFO 2026-06-08 08:15:05 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr8:123,161,780
INFO 2026-06-08 08:15:05 MarkDuplicates Tracking 394893 as yet unmatched pairs. 6845 records in RAM.
INFO 2026-06-08 08:15:07 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr8:131,944,821
INFO 2026-06-08 08:15:07 MarkDuplicates Tracking 394279 as yet unmatched pairs. 6140 records in RAM.
INFO 2026-06-08 08:15:09 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr8:143,581,060
INFO 2026-06-08 08:15:09 MarkDuplicates Tracking 394187 as yet unmatched pairs. 5967 records in RAM.
INFO 2026-06-08 08:15:11 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 2s. Last read position: chr8:143,984,878
INFO 2026-06-08 08:15:11 MarkDuplicates Tracking 391660 as yet unmatched pairs. 3371 records in RAM.
INFO 2026-06-08 08:15:13 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 2s. Last read position: chr8:144,462,242
INFO 2026-06-08 08:15:13 MarkDuplicates Tracking 389216 as yet unmatched pairs. 862 records in RAM.
INFO 2026-06-08 08:15:15 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 2s. Last read position: chr9:3,483,820
INFO 2026-06-08 08:15:15 MarkDuplicates Tracking 387933 as yet unmatched pairs. 22821 records in RAM.
INFO 2026-06-08 08:15:17 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr9:9,442,096
INFO 2026-06-08 08:15:17 MarkDuplicates Tracking 393332 as yet unmatched pairs. 28034 records in RAM.
INFO 2026-06-08 08:15:19 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr9:19,276,199
INFO 2026-06-08 08:15:19 MarkDuplicates Tracking 386020 as yet unmatched pairs. 20623 records in RAM.
INFO 2026-06-08 08:15:20 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr9:33,318,767
INFO 2026-06-08 08:15:20 MarkDuplicates Tracking 384935 as yet unmatched pairs. 19452 records in RAM.
INFO 2026-06-08 08:15:22 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr9:35,714,301
INFO 2026-06-08 08:15:22 MarkDuplicates Tracking 383940 as yet unmatched pairs. 18387 records in RAM.
INFO 2026-06-08 08:15:24 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr9:36,839,659
INFO 2026-06-08 08:15:24 MarkDuplicates Tracking 383236 as yet unmatched pairs. 17609 records in RAM.
INFO 2026-06-08 08:15:26 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr9:66,281,188
INFO 2026-06-08 08:15:26 MarkDuplicates Tracking 381701 as yet unmatched pairs. 15986 records in RAM.
INFO 2026-06-08 08:15:28 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr9:85,692,768
INFO 2026-06-08 08:15:28 MarkDuplicates Tracking 381135 as yet unmatched pairs. 15364 records in RAM.
INFO 2026-06-08 08:15:30 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr9:92,976,232
INFO 2026-06-08 08:15:30 MarkDuplicates Tracking 380419 as yet unmatched pairs. 14563 records in RAM.
INFO 2026-06-08 08:15:32 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 2s. Last read position: chr9:100,226,089
INFO 2026-06-08 08:15:32 MarkDuplicates Tracking 378968 as yet unmatched pairs. 13007 records in RAM.
INFO 2026-06-08 08:15:34 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 2s. Last read position: chr9:113,166,538
INFO 2026-06-08 08:15:34 MarkDuplicates Tracking 378332 as yet unmatched pairs. 12311 records in RAM.
INFO 2026-06-08 08:15:37 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 2s. Last read position: chr9:121,135,827
INFO 2026-06-08 08:15:37 MarkDuplicates Tracking 378056 as yet unmatched pairs. 11972 records in RAM.
INFO 2026-06-08 08:15:39 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 2s. Last read position: chr9:124,923,134
INFO 2026-06-08 08:15:39 MarkDuplicates Tracking 375928 as yet unmatched pairs. 9768 records in RAM.
INFO 2026-06-08 08:15:41 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 2s. Last read position: chr9:128,068,343
INFO 2026-06-08 08:15:41 MarkDuplicates Tracking 374728 as yet unmatched pairs. 8470 records in RAM.
INFO 2026-06-08 08:15:43 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 1s. Last read position: chr9:129,009,090
INFO 2026-06-08 08:15:43 MarkDuplicates Tracking 373979 as yet unmatched pairs. 7680 records in RAM.
INFO 2026-06-08 08:15:45 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr9:131,146,151
INFO 2026-06-08 08:15:45 MarkDuplicates Tracking 372497 as yet unmatched pairs. 6103 records in RAM.
INFO 2026-06-08 08:15:47 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 1s. Last read position: chr9:132,896,258
INFO 2026-06-08 08:15:47 MarkDuplicates Tracking 371549 as yet unmatched pairs. 5088 records in RAM.
INFO 2026-06-08 08:15:49 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 1s. Last read position: chr9:135,938,275
INFO 2026-06-08 08:15:49 MarkDuplicates Tracking 370513 as yet unmatched pairs. 3939 records in RAM.
INFO 2026-06-08 08:15:51 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 1s. Last read position: chr9:136,831,823
INFO 2026-06-08 08:15:51 MarkDuplicates Tracking 369134 as yet unmatched pairs. 2496 records in RAM.
INFO 2026-06-08 08:15:53 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 2s. Last read position: chr9:137,457,449
INFO 2026-06-08 08:15:53 MarkDuplicates Tracking 367733 as yet unmatched pairs. 1038 records in RAM.
INFO 2026-06-08 08:15:55 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 2s. Last read position: chr10:5,925,347
INFO 2026-06-08 08:15:55 MarkDuplicates Tracking 366169 as yet unmatched pairs. 15962 records in RAM.
INFO 2026-06-08 08:15:57 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 1s. Last read position: chr10:15,140,915
INFO 2026-06-08 08:15:57 MarkDuplicates Tracking 365062 as yet unmatched pairs. 14712 records in RAM.
INFO 2026-06-08 08:15:59 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 2s. Last read position: chr10:28,583,473
INFO 2026-06-08 08:15:59 MarkDuplicates Tracking 364584 as yet unmatched pairs. 14182 records in RAM.
INFO 2026-06-08 08:16:01 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 2s. Last read position: chr10:42,632,347
INFO 2026-06-08 08:16:01 MarkDuplicates Tracking 363334 as yet unmatched pairs. 12880 records in RAM.
INFO 2026-06-08 08:16:03 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 1s. Last read position: chr10:48,743,208
INFO 2026-06-08 08:16:03 MarkDuplicates Tracking 363924 as yet unmatched pairs. 13433 records in RAM.
INFO 2026-06-08 08:16:05 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 1s. Last read position: chr10:62,814,030
INFO 2026-06-08 08:16:05 MarkDuplicates Tracking 361986 as yet unmatched pairs. 11451 records in RAM.
INFO 2026-06-08 08:16:07 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 1s. Last read position: chr10:72,274,255
INFO 2026-06-08 08:16:07 MarkDuplicates Tracking 361738 as yet unmatched pairs. 11120 records in RAM.
INFO 2026-06-08 08:16:09 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 1s. Last read position: chr10:75,030,388
INFO 2026-06-08 08:16:09 MarkDuplicates Tracking 359759 as yet unmatched pairs. 9071 records in RAM.
INFO 2026-06-08 08:16:11 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:07:40s. Time for last 1,000,000: 1s. Last read position: chr10:87,062,795
INFO 2026-06-08 08:16:11 MarkDuplicates Tracking 359398 as yet unmatched pairs. 8649 records in RAM.
INFO 2026-06-08 08:16:12 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:07:41s. Time for last 1,000,000: 1s. Last read position: chr10:91,817,190
INFO 2026-06-08 08:16:12 MarkDuplicates Tracking 358130 as yet unmatched pairs. 7301 records in RAM.
INFO 2026-06-08 08:16:14 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 2s. Last read position: chr10:95,874,048
INFO 2026-06-08 08:16:14 MarkDuplicates Tracking 357202 as yet unmatched pairs. 6279 records in RAM.
INFO 2026-06-08 08:16:16 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:45s. Time for last 1,000,000: 1s. Last read position: chr10:99,743,327
INFO 2026-06-08 08:16:16 MarkDuplicates Tracking 356030 as yet unmatched pairs. 5039 records in RAM.
INFO 2026-06-08 08:16:18 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:47s. Time for last 1,000,000: 1s. Last read position: chr10:102,380,272
INFO 2026-06-08 08:16:18 MarkDuplicates Tracking 355114 as yet unmatched pairs. 4047 records in RAM.
INFO 2026-06-08 08:16:20 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 1s. Last read position: chr10:110,890,659
INFO 2026-06-08 08:16:20 MarkDuplicates Tracking 354441 as yet unmatched pairs. 3311 records in RAM.
INFO 2026-06-08 08:16:23 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 2s. Last read position: chr10:121,974,953
INFO 2026-06-08 08:16:23 MarkDuplicates Tracking 353188 as yet unmatched pairs. 1998 records in RAM.
INFO 2026-06-08 08:16:26 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 2s. Last read position: chr10:133,308,976
INFO 2026-06-08 08:16:26 MarkDuplicates Tracking 351945 as yet unmatched pairs. 695 records in RAM.
INFO 2026-06-08 08:16:28 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 2s. Last read position: chr11:562,551
INFO 2026-06-08 08:16:28 MarkDuplicates Tracking 350383 as yet unmatched pairs. 31211 records in RAM.
INFO 2026-06-08 08:16:30 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:59s. Time for last 1,000,000: 2s. Last read position: chr11:1,761,371
INFO 2026-06-08 08:16:30 MarkDuplicates Tracking 350118 as yet unmatched pairs. 30897 records in RAM.
INFO 2026-06-08 08:16:32 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 2s. Last read position: chr11:5,709,583
INFO 2026-06-08 08:16:32 MarkDuplicates Tracking 348263 as yet unmatched pairs. 28974 records in RAM.
INFO 2026-06-08 08:16:35 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 2s. Last read position: chr11:9,853,558
INFO 2026-06-08 08:16:35 MarkDuplicates Tracking 346378 as yet unmatched pairs. 27016 records in RAM.
INFO 2026-06-08 08:16:37 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 2s. Last read position: chr11:19,170,542
INFO 2026-06-08 08:16:37 MarkDuplicates Tracking 345595 as yet unmatched pairs. 26160 records in RAM.
INFO 2026-06-08 08:16:39 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 2s. Last read position: chr11:36,487,827
INFO 2026-06-08 08:16:39 MarkDuplicates Tracking 344605 as yet unmatched pairs. 25119 records in RAM.
INFO 2026-06-08 08:16:41 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 2s. Last read position: chr11:47,232,283
INFO 2026-06-08 08:16:41 MarkDuplicates Tracking 343741 as yet unmatched pairs. 24174 records in RAM.
INFO 2026-06-08 08:16:44 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:08:13s. Time for last 1,000,000: 2s. Last read position: chr11:57,796,477
INFO 2026-06-08 08:16:44 MarkDuplicates Tracking 342672 as yet unmatched pairs. 23043 records in RAM.
INFO 2026-06-08 08:16:46 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 2s. Last read position: chr11:60,931,755
INFO 2026-06-08 08:16:46 MarkDuplicates Tracking 341843 as yet unmatched pairs. 22183 records in RAM.
INFO 2026-06-08 08:17:51 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 65s. Last read position: chr11:62,532,420
INFO 2026-06-08 08:17:51 MarkDuplicates Tracking 340564 as yet unmatched pairs. 20837 records in RAM.
INFO 2026-06-08 08:17:54 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 2s. Last read position: chr11:62,885,203
INFO 2026-06-08 08:17:54 MarkDuplicates Tracking 339851 as yet unmatched pairs. 20068 records in RAM.
INFO 2026-06-08 08:17:55 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr11:64,343,180
INFO 2026-06-08 08:17:55 MarkDuplicates Tracking 338565 as yet unmatched pairs. 18711 records in RAM.
INFO 2026-06-08 08:17:57 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr11:65,108,677
INFO 2026-06-08 08:17:57 MarkDuplicates Tracking 336906 as yet unmatched pairs. 17027 records in RAM.
INFO 2026-06-08 08:17:59 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr11:65,501,354
INFO 2026-06-08 08:17:59 MarkDuplicates Tracking 335979 as yet unmatched pairs. 15981 records in RAM.
INFO 2026-06-08 08:18:01 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr11:65,641,171
INFO 2026-06-08 08:18:01 MarkDuplicates Tracking 334728 as yet unmatched pairs. 14662 records in RAM.
INFO 2026-06-08 08:18:03 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr11:66,232,966
INFO 2026-06-08 08:18:03 MarkDuplicates Tracking 332929 as yet unmatched pairs. 12799 records in RAM.
INFO 2026-06-08 08:18:05 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 2s. Last read position: chr11:67,391,983
INFO 2026-06-08 08:18:05 MarkDuplicates Tracking 331188 as yet unmatched pairs. 11025 records in RAM.
INFO 2026-06-08 08:18:07 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr11:68,043,853
INFO 2026-06-08 08:18:07 MarkDuplicates Tracking 330220 as yet unmatched pairs. 10032 records in RAM.
INFO 2026-06-08 08:18:09 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr11:72,013,278
INFO 2026-06-08 08:18:09 MarkDuplicates Tracking 329088 as yet unmatched pairs. 8842 records in RAM.
INFO 2026-06-08 08:18:11 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr11:73,720,888
INFO 2026-06-08 08:18:11 MarkDuplicates Tracking 327024 as yet unmatched pairs. 6693 records in RAM.
INFO 2026-06-08 08:18:13 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr11:82,931,738
INFO 2026-06-08 08:18:13 MarkDuplicates Tracking 325984 as yet unmatched pairs. 5557 records in RAM.
INFO 2026-06-08 08:18:15 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr11:96,147,104
INFO 2026-06-08 08:18:15 MarkDuplicates Tracking 325202 as yet unmatched pairs. 4673 records in RAM.
INFO 2026-06-08 08:18:17 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr11:111,357,806
INFO 2026-06-08 08:18:17 MarkDuplicates Tracking 324720 as yet unmatched pairs. 4114 records in RAM.
INFO 2026-06-08 08:18:18 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr11:118,489,831
INFO 2026-06-08 08:18:18 MarkDuplicates Tracking 323178 as yet unmatched pairs. 2524 records in RAM.
INFO 2026-06-08 08:18:20 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr11:121,531,370
INFO 2026-06-08 08:18:20 MarkDuplicates Tracking 322116 as yet unmatched pairs. 1434 records in RAM.
INFO 2026-06-08 08:18:22 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 2s. Last read position: chr11:129,865,085
INFO 2026-06-08 08:18:22 MarkDuplicates Tracking 321180 as yet unmatched pairs. 446 records in RAM.
INFO 2026-06-08 08:18:24 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 2s. Last read position: chr12:2,858,725
INFO 2026-06-08 08:18:24 MarkDuplicates Tracking 320129 as yet unmatched pairs. 28342 records in RAM.
INFO 2026-06-08 08:18:26 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr12:6,601,433
INFO 2026-06-08 08:18:26 MarkDuplicates Tracking 318983 as yet unmatched pairs. 27141 records in RAM.
INFO 2026-06-08 08:18:28 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr12:7,136,873
INFO 2026-06-08 08:18:28 MarkDuplicates Tracking 318267 as yet unmatched pairs. 26398 records in RAM.
INFO 2026-06-08 08:18:30 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 2s. Last read position: chr12:11,824,004
INFO 2026-06-08 08:18:30 MarkDuplicates Tracking 317604 as yet unmatched pairs. 25659 records in RAM.
INFO 2026-06-08 08:18:33 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 2s. Last read position: chr12:22,625,254
INFO 2026-06-08 08:18:33 MarkDuplicates Tracking 318226 as yet unmatched pairs. 26213 records in RAM.
INFO 2026-06-08 08:18:35 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr12:27,317,972
INFO 2026-06-08 08:18:35 MarkDuplicates Tracking 315292 as yet unmatched pairs. 23219 records in RAM.
INFO 2026-06-08 08:18:37 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr12:42,464,925
INFO 2026-06-08 08:18:37 MarkDuplicates Tracking 314358 as yet unmatched pairs. 22196 records in RAM.
INFO 2026-06-08 08:18:38 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr12:49,026,491
INFO 2026-06-08 08:18:38 MarkDuplicates Tracking 313746 as yet unmatched pairs. 21516 records in RAM.
INFO 2026-06-08 08:18:40 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr12:49,646,637
INFO 2026-06-08 08:18:40 MarkDuplicates Tracking 312661 as yet unmatched pairs. 20382 records in RAM.
INFO 2026-06-08 08:18:42 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr12:53,195,423
INFO 2026-06-08 08:18:42 MarkDuplicates Tracking 311828 as yet unmatched pairs. 19493 records in RAM.
INFO 2026-06-08 08:18:44 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr12:54,281,486
INFO 2026-06-08 08:18:44 MarkDuplicates Tracking 312499 as yet unmatched pairs. 20101 records in RAM.
INFO 2026-06-08 08:18:46 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr12:56,159,709
INFO 2026-06-08 08:18:46 MarkDuplicates Tracking 310128 as yet unmatched pairs. 17690 records in RAM.
INFO 2026-06-08 08:18:48 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr12:56,670,278
INFO 2026-06-08 08:18:48 MarkDuplicates Tracking 309393 as yet unmatched pairs. 16929 records in RAM.
INFO 2026-06-08 08:18:49 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr12:57,105,476
INFO 2026-06-08 08:18:49 MarkDuplicates Tracking 308378 as yet unmatched pairs. 15878 records in RAM.
INFO 2026-06-08 08:18:51 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr12:57,695,795
INFO 2026-06-08 08:18:51 MarkDuplicates Tracking 307082 as yet unmatched pairs. 14551 records in RAM.
INFO 2026-06-08 08:18:53 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr12:68,615,503
INFO 2026-06-08 08:18:53 MarkDuplicates Tracking 306142 as yet unmatched pairs. 13538 records in RAM.
INFO 2026-06-08 08:18:55 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr12:79,821,460
INFO 2026-06-08 08:18:55 MarkDuplicates Tracking 304967 as yet unmatched pairs. 12301 records in RAM.
INFO 2026-06-08 08:18:58 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 2s. Last read position: chr12:95,296,094
INFO 2026-06-08 08:18:58 MarkDuplicates Tracking 303959 as yet unmatched pairs. 11224 records in RAM.
INFO 2026-06-08 08:19:01 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 3s. Last read position: chr12:104,265,637
INFO 2026-06-08 08:19:01 MarkDuplicates Tracking 303798 as yet unmatched pairs. 11027 records in RAM.
INFO 2026-06-08 08:19:03 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr12:109,907,654
INFO 2026-06-08 08:19:03 MarkDuplicates Tracking 301977 as yet unmatched pairs. 9161 records in RAM.
INFO 2026-06-08 08:19:04 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr12:112,171,258
INFO 2026-06-08 08:19:04 MarkDuplicates Tracking 301198 as yet unmatched pairs. 8310 records in RAM.
INFO 2026-06-08 08:19:06 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr12:113,158,958
INFO 2026-06-08 08:19:06 MarkDuplicates Tracking 300146 as yet unmatched pairs. 7231 records in RAM.
INFO 2026-06-08 08:19:08 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr12:120,158,544
INFO 2026-06-08 08:19:08 MarkDuplicates Tracking 298936 as yet unmatched pairs. 5955 records in RAM.
INFO 2026-06-08 08:19:10 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr12:121,793,151
INFO 2026-06-08 08:19:10 MarkDuplicates Tracking 297666 as yet unmatched pairs. 4608 records in RAM.
INFO 2026-06-08 08:19:12 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr12:124,325,464
INFO 2026-06-08 08:19:12 MarkDuplicates Tracking 296510 as yet unmatched pairs. 3405 records in RAM.
INFO 2026-06-08 08:19:14 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr12:130,875,677
INFO 2026-06-08 08:19:14 MarkDuplicates Tracking 296354 as yet unmatched pairs. 3193 records in RAM.
INFO 2026-06-08 08:19:16 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr12:132,775,206
INFO 2026-06-08 08:19:16 MarkDuplicates Tracking 293800 as yet unmatched pairs. 608 records in RAM.
INFO 2026-06-08 08:19:18 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 2s. Last read position: chr13:21,381,447
INFO 2026-06-08 08:19:18 MarkDuplicates Tracking 292757 as yet unmatched pairs. 6561 records in RAM.
INFO 2026-06-08 08:19:21 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 3s. Last read position: chr13:31,885,848
INFO 2026-06-08 08:19:21 MarkDuplicates Tracking 291624 as yet unmatched pairs. 5359 records in RAM.
INFO 2026-06-08 08:19:23 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr13:42,301,108
INFO 2026-06-08 08:19:23 MarkDuplicates Tracking 290954 as yet unmatched pairs. 4613 records in RAM.
INFO 2026-06-08 08:19:25 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr13:48,490,072
INFO 2026-06-08 08:19:25 MarkDuplicates Tracking 290092 as yet unmatched pairs. 3706 records in RAM.
INFO 2026-06-08 08:19:27 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr13:77,070,657
INFO 2026-06-08 08:19:27 MarkDuplicates Tracking 289327 as yet unmatched pairs. 2875 records in RAM.
INFO 2026-06-08 08:19:29 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr13:98,453,152
INFO 2026-06-08 08:19:29 MarkDuplicates Tracking 288677 as yet unmatched pairs. 2177 records in RAM.
INFO 2026-06-08 08:19:31 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 2s. Last read position: chr13:113,321,711
INFO 2026-06-08 08:19:31 MarkDuplicates Tracking 287095 as yet unmatched pairs. 548 records in RAM.
INFO 2026-06-08 08:19:33 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 2s. Last read position: chr14:21,428,028
INFO 2026-06-08 08:19:33 MarkDuplicates Tracking 285949 as yet unmatched pairs. 20395 records in RAM.
INFO 2026-06-08 08:19:36 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 3s. Last read position: chr14:23,566,571
INFO 2026-06-08 08:19:36 MarkDuplicates Tracking 284842 as yet unmatched pairs. 19249 records in RAM.
INFO 2026-06-08 08:19:38 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 2s. Last read position: chr14:24,300,638
INFO 2026-06-08 08:19:38 MarkDuplicates Tracking 283487 as yet unmatched pairs. 17860 records in RAM.
INFO 2026-06-08 08:19:40 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr14:35,292,421
INFO 2026-06-08 08:19:40 MarkDuplicates Tracking 282552 as yet unmatched pairs. 16884 records in RAM.
INFO 2026-06-08 08:19:42 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr14:49,586,608
INFO 2026-06-08 08:19:42 MarkDuplicates Tracking 324734 as yet unmatched pairs. 59005 records in RAM.
INFO 2026-06-08 08:19:44 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr14:49,586,722
INFO 2026-06-08 08:19:44 MarkDuplicates Tracking 285373 as yet unmatched pairs. 19545 records in RAM.
INFO 2026-06-08 08:19:45 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr14:49,862,578
INFO 2026-06-08 08:19:45 MarkDuplicates Tracking 294700 as yet unmatched pairs. 28817 records in RAM.
INFO 2026-06-08 08:19:47 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr14:49,862,686
INFO 2026-06-08 08:19:47 MarkDuplicates Tracking 307910 as yet unmatched pairs. 42003 records in RAM.
INFO 2026-06-08 08:19:49 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr14:55,138,174
INFO 2026-06-08 08:19:49 MarkDuplicates Tracking 278638 as yet unmatched pairs. 12668 records in RAM.
INFO 2026-06-08 08:19:51 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 2s. Last read position: chr14:64,002,824
INFO 2026-06-08 08:19:51 MarkDuplicates Tracking 277852 as yet unmatched pairs. 11839 records in RAM.
INFO 2026-06-08 08:19:53 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 2s. Last read position: chr14:67,279,256
INFO 2026-06-08 08:19:53 MarkDuplicates Tracking 276515 as yet unmatched pairs. 10481 records in RAM.
INFO 2026-06-08 08:19:56 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 2s. Last read position: chr14:71,105,254
INFO 2026-06-08 08:19:56 MarkDuplicates Tracking 275748 as yet unmatched pairs. 9679 records in RAM.
INFO 2026-06-08 08:19:58 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr14:74,493,770
INFO 2026-06-08 08:19:58 MarkDuplicates Tracking 274413 as yet unmatched pairs. 8292 records in RAM.
INFO 2026-06-08 08:20:00 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr14:89,162,779
INFO 2026-06-08 08:20:00 MarkDuplicates Tracking 273563 as yet unmatched pairs. 7386 records in RAM.
INFO 2026-06-08 08:20:02 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr14:94,079,435
INFO 2026-06-08 08:20:02 MarkDuplicates Tracking 272389 as yet unmatched pairs. 6183 records in RAM.
INFO 2026-06-08 08:20:03 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr14:100,361,818
INFO 2026-06-08 08:20:03 MarkDuplicates Tracking 271947 as yet unmatched pairs. 5655 records in RAM.
INFO 2026-06-08 08:20:05 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr14:103,685,639
INFO 2026-06-08 08:20:05 MarkDuplicates Tracking 270679 as yet unmatched pairs. 4350 records in RAM.
INFO 2026-06-08 08:20:07 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr14:105,765,905
INFO 2026-06-08 08:20:07 MarkDuplicates Tracking 270985 as yet unmatched pairs. 4623 records in RAM.
INFO 2026-06-08 08:20:09 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr14:105,854,509
INFO 2026-06-08 08:20:09 MarkDuplicates Tracking 269375 as yet unmatched pairs. 2972 records in RAM.
INFO 2026-06-08 08:20:12 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 3s. Last read position: chr14:105,931,284
INFO 2026-06-08 08:20:12 MarkDuplicates Tracking 266902 as yet unmatched pairs. 435 records in RAM.
INFO 2026-06-08 08:20:14 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr15:31,327,282
INFO 2026-06-08 08:20:14 MarkDuplicates Tracking 266021 as yet unmatched pairs. 16121 records in RAM.
INFO 2026-06-08 08:20:16 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr15:40,036,455
INFO 2026-06-08 08:20:16 MarkDuplicates Tracking 265311 as yet unmatched pairs. 15384 records in RAM.
INFO 2026-06-08 08:20:18 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr15:41,814,772
INFO 2026-06-08 08:20:18 MarkDuplicates Tracking 263533 as yet unmatched pairs. 13569 records in RAM.
INFO 2026-06-08 08:20:19 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr15:43,793,749
INFO 2026-06-08 08:20:19 MarkDuplicates Tracking 265152 as yet unmatched pairs. 15162 records in RAM.
INFO 2026-06-08 08:20:21 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr15:50,587,921
INFO 2026-06-08 08:20:21 MarkDuplicates Tracking 261570 as yet unmatched pairs. 11540 records in RAM.
INFO 2026-06-08 08:20:23 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr15:57,231,212
INFO 2026-06-08 08:20:23 MarkDuplicates Tracking 262598 as yet unmatched pairs. 12518 records in RAM.
INFO 2026-06-08 08:20:25 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr15:63,156,458
INFO 2026-06-08 08:20:25 MarkDuplicates Tracking 259824 as yet unmatched pairs. 9701 records in RAM.
INFO 2026-06-08 08:20:27 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr15:65,650,469
INFO 2026-06-08 08:20:27 MarkDuplicates Tracking 258911 as yet unmatched pairs. 8743 records in RAM.
INFO 2026-06-08 08:20:29 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr15:70,066,020
INFO 2026-06-08 08:20:29 MarkDuplicates Tracking 257920 as yet unmatched pairs. 7705 records in RAM.
INFO 2026-06-08 08:20:31 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr15:74,035,636
INFO 2026-06-08 08:20:31 MarkDuplicates Tracking 257533 as yet unmatched pairs. 7280 records in RAM.
INFO 2026-06-08 08:20:33 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 2s. Last read position: chr15:75,207,888
INFO 2026-06-08 08:20:33 MarkDuplicates Tracking 256619 as yet unmatched pairs. 6332 records in RAM.
INFO 2026-06-08 08:20:36 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 2s. Last read position: chr15:78,541,921
INFO 2026-06-08 08:20:36 MarkDuplicates Tracking 254662 as yet unmatched pairs. 4333 records in RAM.
INFO 2026-06-08 08:20:37 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr15:85,111,973
INFO 2026-06-08 08:20:37 MarkDuplicates Tracking 253074 as yet unmatched pairs. 2703 records in RAM.
INFO 2026-06-08 08:20:39 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr15:90,530,022
INFO 2026-06-08 08:20:39 MarkDuplicates Tracking 252139 as yet unmatched pairs. 1718 records in RAM.
INFO 2026-06-08 08:20:41 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr15:101,244,265
INFO 2026-06-08 08:20:41 MarkDuplicates Tracking 250737 as yet unmatched pairs. 238 records in RAM.
INFO 2026-06-08 08:20:43 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 2s. Last read position: chr16:676,717
INFO 2026-06-08 08:20:43 MarkDuplicates Tracking 249066 as yet unmatched pairs. 34181 records in RAM.
INFO 2026-06-08 08:20:45 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr16:1,788,593
INFO 2026-06-08 08:20:45 MarkDuplicates Tracking 247604 as yet unmatched pairs. 32664 records in RAM.
INFO 2026-06-08 08:20:47 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr16:2,264,184
INFO 2026-06-08 08:20:47 MarkDuplicates Tracking 245592 as yet unmatched pairs. 30636 records in RAM.
INFO 2026-06-08 08:20:49 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr16:2,769,031
INFO 2026-06-08 08:20:49 MarkDuplicates Tracking 244910 as yet unmatched pairs. 29949 records in RAM.
INFO 2026-06-08 08:20:51 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 2s. Last read position: chr16:4,357,200
INFO 2026-06-08 08:20:51 MarkDuplicates Tracking 243403 as yet unmatched pairs. 28423 records in RAM.
INFO 2026-06-08 08:20:54 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 2s. Last read position: chr16:10,904,776
INFO 2026-06-08 08:20:54 MarkDuplicates Tracking 242543 as yet unmatched pairs. 27527 records in RAM.
INFO 2026-06-08 08:20:55 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr16:12,524,724
INFO 2026-06-08 08:20:55 MarkDuplicates Tracking 240651 as yet unmatched pairs. 25550 records in RAM.
INFO 2026-06-08 08:20:57 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr16:15,612,775
INFO 2026-06-08 08:20:57 MarkDuplicates Tracking 239761 as yet unmatched pairs. 24629 records in RAM.
INFO 2026-06-08 08:20:59 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr16:18,345,307
INFO 2026-06-08 08:20:59 MarkDuplicates Tracking 239454 as yet unmatched pairs. 24315 records in RAM.
INFO 2026-06-08 08:21:00 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr16:19,608,251
INFO 2026-06-08 08:21:00 MarkDuplicates Tracking 238699 as yet unmatched pairs. 23512 records in RAM.
INFO 2026-06-08 08:21:02 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr16:21,424,978
INFO 2026-06-08 08:21:02 MarkDuplicates Tracking 238985 as yet unmatched pairs. 23776 records in RAM.
INFO 2026-06-08 08:21:03 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr16:21,837,630
INFO 2026-06-08 08:21:03 MarkDuplicates Tracking 239157 as yet unmatched pairs. 23938 records in RAM.
INFO 2026-06-08 08:21:05 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr16:22,492,381
INFO 2026-06-08 08:21:05 MarkDuplicates Tracking 237370 as yet unmatched pairs. 22137 records in RAM.
INFO 2026-06-08 08:21:06 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr16:22,535,932
INFO 2026-06-08 08:21:06 MarkDuplicates Tracking 237218 as yet unmatched pairs. 21978 records in RAM.
INFO 2026-06-08 08:21:08 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 2s. Last read position: chr16:27,449,179
INFO 2026-06-08 08:21:08 MarkDuplicates Tracking 237339 as yet unmatched pairs. 22076 records in RAM.
INFO 2026-06-08 08:21:10 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr16:28,843,132
INFO 2026-06-08 08:21:10 MarkDuplicates Tracking 235320 as yet unmatched pairs. 20040 records in RAM.
INFO 2026-06-08 08:21:12 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr16:29,454,022
INFO 2026-06-08 08:21:12 MarkDuplicates Tracking 236306 as yet unmatched pairs. 21021 records in RAM.
INFO 2026-06-08 08:21:13 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr16:29,696,693
INFO 2026-06-08 08:21:13 MarkDuplicates Tracking 234229 as yet unmatched pairs. 18930 records in RAM.
INFO 2026-06-08 08:21:15 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr16:30,187,739
INFO 2026-06-08 08:21:15 MarkDuplicates Tracking 232900 as yet unmatched pairs. 17591 records in RAM.
INFO 2026-06-08 08:21:17 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 2s. Last read position: chr16:30,369,758
INFO 2026-06-08 08:21:17 MarkDuplicates Tracking 232385 as yet unmatched pairs. 17056 records in RAM.
INFO 2026-06-08 08:21:20 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 2s. Last read position: chr16:30,763,180
INFO 2026-06-08 08:21:20 MarkDuplicates Tracking 230575 as yet unmatched pairs. 15210 records in RAM.
INFO 2026-06-08 08:21:22 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr16:31,490,509
INFO 2026-06-08 08:21:22 MarkDuplicates Tracking 229134 as yet unmatched pairs. 13736 records in RAM.
INFO 2026-06-08 08:21:24 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr16:53,267,338
INFO 2026-06-08 08:21:24 MarkDuplicates Tracking 228145 as yet unmatched pairs. 12679 records in RAM.
INFO 2026-06-08 08:21:26 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr16:57,471,068
INFO 2026-06-08 08:21:26 MarkDuplicates Tracking 226916 as yet unmatched pairs. 11423 records in RAM.
INFO 2026-06-08 08:21:28 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr16:67,538,480
INFO 2026-06-08 08:21:28 MarkDuplicates Tracking 226075 as yet unmatched pairs. 10549 records in RAM.
INFO 2026-06-08 08:21:30 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr16:68,877,441
INFO 2026-06-08 08:21:30 MarkDuplicates Tracking 224078 as yet unmatched pairs. 8527 records in RAM.
INFO 2026-06-08 08:21:31 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr16:70,381,699
INFO 2026-06-08 08:21:31 MarkDuplicates Tracking 223269 as yet unmatched pairs. 7693 records in RAM.
INFO 2026-06-08 08:21:33 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr16:74,956,546
INFO 2026-06-08 08:21:33 MarkDuplicates Tracking 222255 as yet unmatched pairs. 6641 records in RAM.
INFO 2026-06-08 08:21:35 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr16:84,179,228
INFO 2026-06-08 08:21:35 MarkDuplicates Tracking 221706 as yet unmatched pairs. 6025 records in RAM.
INFO 2026-06-08 08:21:37 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr16:87,869,187
INFO 2026-06-08 08:21:37 MarkDuplicates Tracking 219855 as yet unmatched pairs. 4130 records in RAM.
INFO 2026-06-08 08:21:40 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 2s. Last read position: chr16:88,859,681
INFO 2026-06-08 08:21:40 MarkDuplicates Tracking 217995 as yet unmatched pairs. 2239 records in RAM.
INFO 2026-06-08 08:21:42 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr16:89,721,612
INFO 2026-06-08 08:21:42 MarkDuplicates Tracking 216868 as yet unmatched pairs. 1078 records in RAM.
INFO 2026-06-08 08:21:44 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 2s. Last read position: chr17:1,482,549
INFO 2026-06-08 08:21:44 MarkDuplicates Tracking 215995 as yet unmatched pairs. 38690 records in RAM.
INFO 2026-06-08 08:21:46 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr17:2,697,895
INFO 2026-06-08 08:21:46 MarkDuplicates Tracking 214281 as yet unmatched pairs. 36956 records in RAM.
INFO 2026-06-08 08:21:48 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr17:4,898,837
INFO 2026-06-08 08:21:48 MarkDuplicates Tracking 212776 as yet unmatched pairs. 35439 records in RAM.
INFO 2026-06-08 08:21:50 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr17:7,015,099
INFO 2026-06-08 08:21:50 MarkDuplicates Tracking 211981 as yet unmatched pairs. 34613 records in RAM.
INFO 2026-06-08 08:21:51 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr17:7,513,406
INFO 2026-06-08 08:21:51 MarkDuplicates Tracking 210449 as yet unmatched pairs. 33075 records in RAM.
INFO 2026-06-08 08:21:53 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr17:8,175,729
INFO 2026-06-08 08:21:53 MarkDuplicates Tracking 209215 as yet unmatched pairs. 31829 records in RAM.
INFO 2026-06-08 08:21:55 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr17:16,233,968
INFO 2026-06-08 08:21:55 MarkDuplicates Tracking 207951 as yet unmatched pairs. 30554 records in RAM.
INFO 2026-06-08 08:21:57 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr17:18,103,870
INFO 2026-06-08 08:21:57 MarkDuplicates Tracking 206877 as yet unmatched pairs. 29441 records in RAM.
INFO 2026-06-08 08:21:59 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr17:22,204,560
INFO 2026-06-08 08:21:59 MarkDuplicates Tracking 205490 as yet unmatched pairs. 28037 records in RAM.
INFO 2026-06-08 08:22:01 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 2s. Last read position: chr17:28,697,015
INFO 2026-06-08 08:22:01 MarkDuplicates Tracking 204802 as yet unmatched pairs. 27339 records in RAM.
INFO 2026-06-08 08:22:03 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 2s. Last read position: chr17:30,495,472
INFO 2026-06-08 08:22:03 MarkDuplicates Tracking 203453 as yet unmatched pairs. 25959 records in RAM.
INFO 2026-06-08 08:22:05 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr17:35,137,615
INFO 2026-06-08 08:22:05 MarkDuplicates Tracking 202583 as yet unmatched pairs. 25073 records in RAM.
INFO 2026-06-08 08:22:07 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr17:36,334,055
INFO 2026-06-08 08:22:07 MarkDuplicates Tracking 201532 as yet unmatched pairs. 24021 records in RAM.
INFO 2026-06-08 08:22:08 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr17:38,466,759
INFO 2026-06-08 08:22:08 MarkDuplicates Tracking 201061 as yet unmatched pairs. 23522 records in RAM.
INFO 2026-06-08 08:22:10 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr17:39,658,488
INFO 2026-06-08 08:22:10 MarkDuplicates Tracking 199948 as yet unmatched pairs. 22390 records in RAM.
INFO 2026-06-08 08:22:12 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr17:41,690,859
INFO 2026-06-08 08:22:12 MarkDuplicates Tracking 198792 as yet unmatched pairs. 21202 records in RAM.
INFO 2026-06-08 08:22:14 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr17:42,669,435
INFO 2026-06-08 08:22:14 MarkDuplicates Tracking 198136 as yet unmatched pairs. 20527 records in RAM.
INFO 2026-06-08 08:22:16 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr17:44,189,175
INFO 2026-06-08 08:22:16 MarkDuplicates Tracking 196197 as yet unmatched pairs. 18585 records in RAM.
INFO 2026-06-08 08:22:18 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 2s. Last read position: chr17:45,468,367
INFO 2026-06-08 08:22:18 MarkDuplicates Tracking 194775 as yet unmatched pairs. 17128 records in RAM.
INFO 2026-06-08 08:22:20 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr17:47,677,105
INFO 2026-06-08 08:22:20 MarkDuplicates Tracking 194413 as yet unmatched pairs. 16737 records in RAM.
INFO 2026-06-08 08:22:22 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 2s. Last read position: chr17:49,717,665
INFO 2026-06-08 08:22:22 MarkDuplicates Tracking 192989 as yet unmatched pairs. 15295 records in RAM.
INFO 2026-06-08 08:22:24 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr17:57,849,291
INFO 2026-06-08 08:22:24 MarkDuplicates Tracking 191581 as yet unmatched pairs. 13862 records in RAM.
INFO 2026-06-08 08:22:26 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr17:59,693,732
INFO 2026-06-08 08:22:26 MarkDuplicates Tracking 190731 as yet unmatched pairs. 12988 records in RAM.
INFO 2026-06-08 08:22:28 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr17:63,837,488
INFO 2026-06-08 08:22:28 MarkDuplicates Tracking 190120 as yet unmatched pairs. 12344 records in RAM.
INFO 2026-06-08 08:22:30 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr17:68,042,911
INFO 2026-06-08 08:22:30 MarkDuplicates Tracking 188401 as yet unmatched pairs. 10604 records in RAM.
INFO 2026-06-08 08:22:32 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chr17:75,154,363
INFO 2026-06-08 08:22:32 MarkDuplicates Tracking 186887 as yet unmatched pairs. 9073 records in RAM.
INFO 2026-06-08 08:22:34 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr17:76,090,357
INFO 2026-06-08 08:22:34 MarkDuplicates Tracking 185772 as yet unmatched pairs. 7947 records in RAM.
INFO 2026-06-08 08:22:35 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr17:78,117,913
INFO 2026-06-08 08:22:35 MarkDuplicates Tracking 184890 as yet unmatched pairs. 7018 records in RAM.
INFO 2026-06-08 08:22:37 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr17:78,997,171
INFO 2026-06-08 08:22:37 MarkDuplicates Tracking 182959 as yet unmatched pairs. 5067 records in RAM.
INFO 2026-06-08 08:22:39 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr17:80,390,013
INFO 2026-06-08 08:22:39 MarkDuplicates Tracking 182004 as yet unmatched pairs. 4096 records in RAM.
INFO 2026-06-08 08:22:41 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr17:81,855,163
INFO 2026-06-08 08:22:41 MarkDuplicates Tracking 181096 as yet unmatched pairs. 3180 records in RAM.
INFO 2026-06-08 08:22:45 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 3s. Last read position: chr17:82,248,904
INFO 2026-06-08 08:22:45 MarkDuplicates Tracking 178829 as yet unmatched pairs. 900 records in RAM.
INFO 2026-06-08 08:22:47 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 2s. Last read position: chr18:3,879,363
INFO 2026-06-08 08:22:47 MarkDuplicates Tracking 177608 as yet unmatched pairs. 7055 records in RAM.
INFO 2026-06-08 08:22:49 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr18:20,986,953
INFO 2026-06-08 08:22:49 MarkDuplicates Tracking 176683 as yet unmatched pairs. 6096 records in RAM.
INFO 2026-06-08 08:22:50 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr18:36,114,454
INFO 2026-06-08 08:22:50 MarkDuplicates Tracking 175554 as yet unmatched pairs. 4947 records in RAM.
INFO 2026-06-08 08:22:52 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr18:51,177,072
INFO 2026-06-08 08:22:52 MarkDuplicates Tracking 174587 as yet unmatched pairs. 3973 records in RAM.
INFO 2026-06-08 08:22:54 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr18:62,575,149
INFO 2026-06-08 08:22:54 MarkDuplicates Tracking 173377 as yet unmatched pairs. 2708 records in RAM.
INFO 2026-06-08 08:22:56 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr18:74,598,242
INFO 2026-06-08 08:22:56 MarkDuplicates Tracking 171701 as yet unmatched pairs. 983 records in RAM.
INFO 2026-06-08 08:22:58 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 2s. Last read position: chr19:632,852
INFO 2026-06-08 08:22:58 MarkDuplicates Tracking 170365 as yet unmatched pairs. 56063 records in RAM.
INFO 2026-06-08 08:23:01 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 2s. Last read position: chr19:1,081,844
INFO 2026-06-08 08:23:01 MarkDuplicates Tracking 169257 as yet unmatched pairs. 54938 records in RAM.
INFO 2026-06-08 08:23:03 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr19:1,440,145
INFO 2026-06-08 08:23:03 MarkDuplicates Tracking 168473 as yet unmatched pairs. 54131 records in RAM.
INFO 2026-06-08 08:23:05 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 1s. Last read position: chr19:2,071,536
INFO 2026-06-08 08:23:05 MarkDuplicates Tracking 165112 as yet unmatched pairs. 50766 records in RAM.
INFO 2026-06-08 08:23:07 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 1s. Last read position: chr19:2,634,316
INFO 2026-06-08 08:23:07 MarkDuplicates Tracking 163407 as yet unmatched pairs. 49046 records in RAM.
INFO 2026-06-08 08:23:08 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr19:4,090,503
INFO 2026-06-08 08:23:08 MarkDuplicates Tracking 162575 as yet unmatched pairs. 48201 records in RAM.
INFO 2026-06-08 08:23:10 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr19:5,220,112
INFO 2026-06-08 08:23:10 MarkDuplicates Tracking 160300 as yet unmatched pairs. 45924 records in RAM.
INFO 2026-06-08 08:23:12 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: chr19:6,468,857
INFO 2026-06-08 08:23:12 MarkDuplicates Tracking 159252 as yet unmatched pairs. 44852 records in RAM.
INFO 2026-06-08 08:23:14 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 2s. Last read position: chr19:7,694,523
INFO 2026-06-08 08:23:14 MarkDuplicates Tracking 157973 as yet unmatched pairs. 43562 records in RAM.
INFO 2026-06-08 08:23:16 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 1s. Last read position: chr19:10,113,906
INFO 2026-06-08 08:23:16 MarkDuplicates Tracking 156258 as yet unmatched pairs. 41840 records in RAM.
INFO 2026-06-08 08:23:18 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 2s. Last read position: chr19:10,561,214
INFO 2026-06-08 08:23:18 MarkDuplicates Tracking 154547 as yet unmatched pairs. 40118 records in RAM.
INFO 2026-06-08 08:23:20 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 2s. Last read position: chr19:11,442,464
INFO 2026-06-08 08:23:20 MarkDuplicates Tracking 153472 as yet unmatched pairs. 39036 records in RAM.
INFO 2026-06-08 08:23:22 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 1s. Last read position: chr19:12,876,008
INFO 2026-06-08 08:23:22 MarkDuplicates Tracking 152283 as yet unmatched pairs. 37826 records in RAM.
INFO 2026-06-08 08:23:24 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 1s. Last read position: chr19:14,136,302
INFO 2026-06-08 08:23:24 MarkDuplicates Tracking 150723 as yet unmatched pairs. 36253 records in RAM.
INFO 2026-06-08 08:23:26 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr19:15,255,360
INFO 2026-06-08 08:23:26 MarkDuplicates Tracking 150112 as yet unmatched pairs. 35637 records in RAM.
INFO 2026-06-08 08:23:27 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 1s. Last read position: chr19:16,425,260
INFO 2026-06-08 08:23:27 MarkDuplicates Tracking 148095 as yet unmatched pairs. 33610 records in RAM.
INFO 2026-06-08 08:23:29 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 1s. Last read position: chr19:17,726,496
INFO 2026-06-08 08:23:29 MarkDuplicates Tracking 146428 as yet unmatched pairs. 31938 records in RAM.
INFO 2026-06-08 08:23:31 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 1s. Last read position: chr19:18,432,718
INFO 2026-06-08 08:23:31 MarkDuplicates Tracking 144516 as yet unmatched pairs. 30026 records in RAM.
INFO 2026-06-08 08:23:33 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 1s. Last read position: chr19:19,147,708
INFO 2026-06-08 08:23:33 MarkDuplicates Tracking 143332 as yet unmatched pairs. 28834 records in RAM.
INFO 2026-06-08 08:23:35 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr19:24,127,846
INFO 2026-06-08 08:23:35 MarkDuplicates Tracking 141500 as yet unmatched pairs. 26979 records in RAM.
INFO 2026-06-08 08:23:37 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 2s. Last read position: chr19:35,278,996
INFO 2026-06-08 08:23:37 MarkDuplicates Tracking 140928 as yet unmatched pairs. 26389 records in RAM.
INFO 2026-06-08 08:23:39 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 2s. Last read position: chr19:36,111,192
INFO 2026-06-08 08:23:39 MarkDuplicates Tracking 138304 as yet unmatched pairs. 23763 records in RAM.
INFO 2026-06-08 08:23:41 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 1s. Last read position: chr19:38,701,035
INFO 2026-06-08 08:23:41 MarkDuplicates Tracking 137174 as yet unmatched pairs. 22621 records in RAM.
INFO 2026-06-08 08:23:43 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 1s. Last read position: chr19:39,433,711
INFO 2026-06-08 08:23:43 MarkDuplicates Tracking 138818 as yet unmatched pairs. 24255 records in RAM.
INFO 2026-06-08 08:23:45 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 1s. Last read position: chr19:40,590,386
INFO 2026-06-08 08:23:45 MarkDuplicates Tracking 135225 as yet unmatched pairs. 20661 records in RAM.
INFO 2026-06-08 08:23:47 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:15:16s. Time for last 1,000,000: 1s. Last read position: chr19:41,897,945
INFO 2026-06-08 08:23:47 MarkDuplicates Tracking 133989 as yet unmatched pairs. 19418 records in RAM.
INFO 2026-06-08 08:23:49 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:15:18s. Time for last 1,000,000: 1s. Last read position: chr19:42,272,242
INFO 2026-06-08 08:23:49 MarkDuplicates Tracking 134357 as yet unmatched pairs. 19784 records in RAM.
INFO 2026-06-08 08:23:51 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 2s. Last read position: chr19:42,360,863
INFO 2026-06-08 08:23:51 MarkDuplicates Tracking 130694 as yet unmatched pairs. 16102 records in RAM.
INFO 2026-06-08 08:23:53 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 1s. Last read position: chr19:45,302,409
INFO 2026-06-08 08:23:53 MarkDuplicates Tracking 129175 as yet unmatched pairs. 14561 records in RAM.
INFO 2026-06-08 08:23:55 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 1s. Last read position: chr19:46,383,789
INFO 2026-06-08 08:23:55 MarkDuplicates Tracking 127380 as yet unmatched pairs. 12753 records in RAM.
INFO 2026-06-08 08:23:57 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:15:26s. Time for last 1,000,000: 1s. Last read position: chr19:47,495,557
INFO 2026-06-08 08:23:57 MarkDuplicates Tracking 125857 as yet unmatched pairs. 11212 records in RAM.
INFO 2026-06-08 08:23:58 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:15:27s. Time for last 1,000,000: 1s. Last read position: chr19:48,919,259
INFO 2026-06-08 08:23:58 MarkDuplicates Tracking 124195 as yet unmatched pairs. 9543 records in RAM.
INFO 2026-06-08 08:24:00 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:15:29s. Time for last 1,000,000: 1s. Last read position: chr19:49,596,689
INFO 2026-06-08 08:24:00 MarkDuplicates Tracking 122887 as yet unmatched pairs. 8230 records in RAM.
INFO 2026-06-08 08:24:02 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:15:31s. Time for last 1,000,000: 1s. Last read position: chr19:49,889,949
INFO 2026-06-08 08:24:02 MarkDuplicates Tracking 122113 as yet unmatched pairs. 7444 records in RAM.
INFO 2026-06-08 08:24:04 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:15:33s. Time for last 1,000,000: 1s. Last read position: chr19:52,065,928
INFO 2026-06-08 08:24:04 MarkDuplicates Tracking 119837 as yet unmatched pairs. 5155 records in RAM.
INFO 2026-06-08 08:24:05 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:15:34s. Time for last 1,000,000: 1s. Last read position: chr19:54,458,803
INFO 2026-06-08 08:24:05 MarkDuplicates Tracking 119322 as yet unmatched pairs. 4636 records in RAM.
INFO 2026-06-08 08:24:07 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:15:36s. Time for last 1,000,000: 2s. Last read position: chr19:55,642,587
INFO 2026-06-08 08:24:07 MarkDuplicates Tracking 116832 as yet unmatched pairs. 2139 records in RAM.
INFO 2026-06-08 08:24:09 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:15:38s. Time for last 1,000,000: 1s. Last read position: chr19:58,207,022
INFO 2026-06-08 08:24:09 MarkDuplicates Tracking 115744 as yet unmatched pairs. 1043 records in RAM.
INFO 2026-06-08 08:24:11 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:15:40s. Time for last 1,000,000: 1s. Last read position: chr20:2,461,681
INFO 2026-06-08 08:24:11 MarkDuplicates Tracking 114347 as yet unmatched pairs. 14374 records in RAM.
INFO 2026-06-08 08:24:12 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:15:41s. Time for last 1,000,000: 1s. Last read position: chr20:5,977,913
INFO 2026-06-08 08:24:12 MarkDuplicates Tracking 112684 as yet unmatched pairs. 12699 records in RAM.
INFO 2026-06-08 08:24:14 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:15:43s. Time for last 1,000,000: 1s. Last read position: chr20:25,248,195
INFO 2026-06-08 08:24:14 MarkDuplicates Tracking 111744 as yet unmatched pairs. 11740 records in RAM.
INFO 2026-06-08 08:24:16 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:15:45s. Time for last 1,000,000: 1s. Last read position: chr20:34,526,280
INFO 2026-06-08 08:24:16 MarkDuplicates Tracking 111223 as yet unmatched pairs. 11185 records in RAM.
INFO 2026-06-08 08:24:18 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:15:47s. Time for last 1,000,000: 1s. Last read position: chr20:36,591,122
INFO 2026-06-08 08:24:18 MarkDuplicates Tracking 110508 as yet unmatched pairs. 10462 records in RAM.
INFO 2026-06-08 08:24:19 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:15:48s. Time for last 1,000,000: 1s. Last read position: chr20:41,566,477
INFO 2026-06-08 08:24:19 MarkDuplicates Tracking 108006 as yet unmatched pairs. 7953 records in RAM.
INFO 2026-06-08 08:24:21 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:15:50s. Time for last 1,000,000: 1s. Last read position: chr20:46,128,901
INFO 2026-06-08 08:24:21 MarkDuplicates Tracking 107247 as yet unmatched pairs. 7191 records in RAM.
INFO 2026-06-08 08:24:23 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:15:52s. Time for last 1,000,000: 1s. Last read position: chr20:49,248,312
INFO 2026-06-08 08:24:23 MarkDuplicates Tracking 106210 as yet unmatched pairs. 6138 records in RAM.
INFO 2026-06-08 08:24:25 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:15:54s. Time for last 1,000,000: 1s. Last read position: chr20:57,500,532
INFO 2026-06-08 08:24:25 MarkDuplicates Tracking 104392 as yet unmatched pairs. 4310 records in RAM.
INFO 2026-06-08 08:24:27 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:15:56s. Time for last 1,000,000: 1s. Last read position: chr20:62,330,909
INFO 2026-06-08 08:24:27 MarkDuplicates Tracking 103254 as yet unmatched pairs. 3152 records in RAM.
INFO 2026-06-08 08:24:28 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:15:57s. Time for last 1,000,000: 1s. Last read position: chr20:63,567,373
INFO 2026-06-08 08:24:28 MarkDuplicates Tracking 103639 as yet unmatched pairs. 3530 records in RAM.
INFO 2026-06-08 08:24:30 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:15:59s. Time for last 1,000,000: 2s. Last read position: chr21:5,034,995
INFO 2026-06-08 08:24:30 MarkDuplicates Tracking 100825 as yet unmatched pairs. 30180 records in RAM.
INFO 2026-06-08 08:24:32 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:16:01s. Time for last 1,000,000: 1s. Last read position: chr21:8,210,330
INFO 2026-06-08 08:24:32 MarkDuplicates Tracking 98865 as yet unmatched pairs. 28214 records in RAM.
INFO 2026-06-08 08:24:33 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:16:02s. Time for last 1,000,000: 1s. Last read position: chr21:8,214,675
INFO 2026-06-08 08:24:33 MarkDuplicates Tracking 98616 as yet unmatched pairs. 27965 records in RAM.
INFO 2026-06-08 08:24:34 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:16:03s. Time for last 1,000,000: 1s. Last read position: chr21:8,216,837
INFO 2026-06-08 08:24:34 MarkDuplicates Tracking 95727 as yet unmatched pairs. 25052 records in RAM.
INFO 2026-06-08 08:24:36 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:16:05s. Time for last 1,000,000: 2s. Last read position: chr21:8,217,217
INFO 2026-06-08 08:24:36 MarkDuplicates Tracking 93345 as yet unmatched pairs. 22667 records in RAM.
INFO 2026-06-08 08:24:37 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:16:06s. Time for last 1,000,000: 1s. Last read position: chr21:8,252,271
INFO 2026-06-08 08:24:37 MarkDuplicates Tracking 92081 as yet unmatched pairs. 21400 records in RAM.
INFO 2026-06-08 08:24:38 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:16:07s. Time for last 1,000,000: 1s. Last read position: chr21:8,257,855
INFO 2026-06-08 08:24:38 MarkDuplicates Tracking 90946 as yet unmatched pairs. 20265 records in RAM.
INFO 2026-06-08 08:24:39 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:16:09s. Time for last 1,000,000: 1s. Last read position: chr21:8,260,314
INFO 2026-06-08 08:24:39 MarkDuplicates Tracking 90302 as yet unmatched pairs. 19617 records in RAM.
INFO 2026-06-08 08:24:41 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:16:10s. Time for last 1,000,000: 1s. Last read position: chr21:8,396,653
INFO 2026-06-08 08:24:41 MarkDuplicates Tracking 91180 as yet unmatched pairs. 20495 records in RAM.
INFO 2026-06-08 08:24:42 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:16:11s. Time for last 1,000,000: 1s. Last read position: chr21:8,399,800
INFO 2026-06-08 08:24:42 MarkDuplicates Tracking 88898 as yet unmatched pairs. 18211 records in RAM.
INFO 2026-06-08 08:24:43 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:16:12s. Time for last 1,000,000: 1s. Last read position: chr21:8,400,065
INFO 2026-06-08 08:24:43 MarkDuplicates Tracking 84551 as yet unmatched pairs. 13863 records in RAM.
INFO 2026-06-08 08:24:45 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:16:14s. Time for last 1,000,000: 1s. Last read position: chr21:8,435,599
INFO 2026-06-08 08:24:45 MarkDuplicates Tracking 82981 as yet unmatched pairs. 12285 records in RAM.
INFO 2026-06-08 08:24:46 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:16:15s. Time for last 1,000,000: 1s. Last read position: chr21:8,440,865
INFO 2026-06-08 08:24:46 MarkDuplicates Tracking 82564 as yet unmatched pairs. 11868 records in RAM.
INFO 2026-06-08 08:24:47 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:16:16s. Time for last 1,000,000: 1s. Last read position: chr21:8,443,336
INFO 2026-06-08 08:24:47 MarkDuplicates Tracking 80545 as yet unmatched pairs. 9849 records in RAM.
INFO 2026-06-08 08:24:49 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:16:18s. Time for last 1,000,000: 1s. Last read position: chr21:8,444,191
INFO 2026-06-08 08:24:49 MarkDuplicates Tracking 80451 as yet unmatched pairs. 9755 records in RAM.
INFO 2026-06-08 08:24:51 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:16:20s. Time for last 1,000,000: 2s. Last read position: chr21:8,444,642
INFO 2026-06-08 08:24:51 MarkDuplicates Tracking 77893 as yet unmatched pairs. 7197 records in RAM.
INFO 2026-06-08 08:24:53 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:16:22s. Time for last 1,000,000: 1s. Last read position: chr21:29,326,791
INFO 2026-06-08 08:24:53 MarkDuplicates Tracking 75793 as yet unmatched pairs. 5088 records in RAM.
INFO 2026-06-08 08:24:55 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:16:24s. Time for last 1,000,000: 1s. Last read position: chr21:34,708,040
INFO 2026-06-08 08:24:55 MarkDuplicates Tracking 74359 as yet unmatched pairs. 3651 records in RAM.
INFO 2026-06-08 08:24:57 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:16:26s. Time for last 1,000,000: 1s. Last read position: chr21:42,852,266
INFO 2026-06-08 08:24:57 MarkDuplicates Tracking 73330 as yet unmatched pairs. 2622 records in RAM.
INFO 2026-06-08 08:24:58 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:16:28s. Time for last 1,000,000: 1s. Last read position: chr21:44,304,235
INFO 2026-06-08 08:24:58 MarkDuplicates Tracking 73094 as yet unmatched pairs. 2384 records in RAM.
INFO 2026-06-08 08:25:00 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:16:29s. Time for last 1,000,000: 1s. Last read position: chr22:15,563,824
INFO 2026-06-08 08:25:00 MarkDuplicates Tracking 70711 as yet unmatched pairs. 18398 records in RAM.
INFO 2026-06-08 08:25:02 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:16:31s. Time for last 1,000,000: 1s. Last read position: chr22:20,712,512
INFO 2026-06-08 08:25:02 MarkDuplicates Tracking 69392 as yet unmatched pairs. 17069 records in RAM.
INFO 2026-06-08 08:25:04 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:16:33s. Time for last 1,000,000: 1s. Last read position: chr22:23,285,072
INFO 2026-06-08 08:25:04 MarkDuplicates Tracking 68303 as yet unmatched pairs. 15973 records in RAM.
INFO 2026-06-08 08:25:05 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:16:34s. Time for last 1,000,000: 1s. Last read position: chr22:28,772,813
INFO 2026-06-08 08:25:05 MarkDuplicates Tracking 66970 as yet unmatched pairs. 14636 records in RAM.
INFO 2026-06-08 08:25:07 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:16:36s. Time for last 1,000,000: 1s. Last read position: chr22:29,299,778
INFO 2026-06-08 08:25:07 MarkDuplicates Tracking 65829 as yet unmatched pairs. 13491 records in RAM.
INFO 2026-06-08 08:25:09 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:16:38s. Time for last 1,000,000: 1s. Last read position: chr22:31,738,484
INFO 2026-06-08 08:25:09 MarkDuplicates Tracking 64562 as yet unmatched pairs. 12217 records in RAM.
INFO 2026-06-08 08:25:10 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:16:39s. Time for last 1,000,000: 1s. Last read position: chr22:36,511,756
INFO 2026-06-08 08:25:10 MarkDuplicates Tracking 63664 as yet unmatched pairs. 11314 records in RAM.
INFO 2026-06-08 08:25:12 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:16:41s. Time for last 1,000,000: 1s. Last read position: chr22:37,755,109
INFO 2026-06-08 08:25:12 MarkDuplicates Tracking 62062 as yet unmatched pairs. 9703 records in RAM.
INFO 2026-06-08 08:25:14 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:16:43s. Time for last 1,000,000: 1s. Last read position: chr22:38,982,455
INFO 2026-06-08 08:25:14 MarkDuplicates Tracking 60538 as yet unmatched pairs. 8178 records in RAM.
INFO 2026-06-08 08:25:16 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:16:45s. Time for last 1,000,000: 1s. Last read position: chr22:40,848,311
INFO 2026-06-08 08:25:16 MarkDuplicates Tracking 59546 as yet unmatched pairs. 7176 records in RAM.
INFO 2026-06-08 08:25:17 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:16:46s. Time for last 1,000,000: 1s. Last read position: chr22:41,911,228
INFO 2026-06-08 08:25:17 MarkDuplicates Tracking 58156 as yet unmatched pairs. 5773 records in RAM.
INFO 2026-06-08 08:25:19 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:16:48s. Time for last 1,000,000: 1s. Last read position: chr22:44,131,520
INFO 2026-06-08 08:25:19 MarkDuplicates Tracking 57219 as yet unmatched pairs. 4830 records in RAM.
INFO 2026-06-08 08:25:21 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:16:50s. Time for last 1,000,000: 1s. Last read position: chr22:50,221,214
INFO 2026-06-08 08:25:21 MarkDuplicates Tracking 56181 as yet unmatched pairs. 3787 records in RAM.
INFO 2026-06-08 08:25:23 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:16:52s. Time for last 1,000,000: 1s. Last read position: chr22:50,506,393
INFO 2026-06-08 08:25:23 MarkDuplicates Tracking 55020 as yet unmatched pairs. 2623 records in RAM.
INFO 2026-06-08 08:25:24 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:16:54s. Time for last 1,000,000: 1s. Last read position: chrX:1,600,427
INFO 2026-06-08 08:25:24 MarkDuplicates Tracking 51647 as yet unmatched pairs. 15105 records in RAM.
INFO 2026-06-08 08:25:26 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:16:55s. Time for last 1,000,000: 1s. Last read position: chrX:16,818,573
INFO 2026-06-08 08:25:26 MarkDuplicates Tracking 50470 as yet unmatched pairs. 13926 records in RAM.
INFO 2026-06-08 08:25:28 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:16:57s. Time for last 1,000,000: 1s. Last read position: chrX:38,805,269
INFO 2026-06-08 08:25:28 MarkDuplicates Tracking 49681 as yet unmatched pairs. 13108 records in RAM.
INFO 2026-06-08 08:25:29 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:16:59s. Time for last 1,000,000: 1s. Last read position: chrX:46,758,720
INFO 2026-06-08 08:25:29 MarkDuplicates Tracking 48669 as yet unmatched pairs. 12094 records in RAM.
INFO 2026-06-08 08:25:31 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:17:00s. Time for last 1,000,000: 1s. Last read position: chrX:48,918,627
INFO 2026-06-08 08:25:31 MarkDuplicates Tracking 47148 as yet unmatched pairs. 10561 records in RAM.
INFO 2026-06-08 08:25:33 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:17:02s. Time for last 1,000,000: 1s. Last read position: chrX:53,549,070
INFO 2026-06-08 08:25:33 MarkDuplicates Tracking 46398 as yet unmatched pairs. 9811 records in RAM.
INFO 2026-06-08 08:25:36 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:17:05s. Time for last 1,000,000: 3s. Last read position: chrX:64,268,787
INFO 2026-06-08 08:25:36 MarkDuplicates Tracking 44521 as yet unmatched pairs. 7934 records in RAM.
INFO 2026-06-08 08:25:38 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:17:07s. Time for last 1,000,000: 1s. Last read position: chrX:71,556,770
INFO 2026-06-08 08:25:38 MarkDuplicates Tracking 44234 as yet unmatched pairs. 7646 records in RAM.
INFO 2026-06-08 08:25:40 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:17:09s. Time for last 1,000,000: 1s. Last read position: chrX:77,968,995
INFO 2026-06-08 08:25:40 MarkDuplicates Tracking 42798 as yet unmatched pairs. 6210 records in RAM.
INFO 2026-06-08 08:25:42 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:17:11s. Time for last 1,000,000: 1s. Last read position: chrX:109,722,662
INFO 2026-06-08 08:25:42 MarkDuplicates Tracking 41449 as yet unmatched pairs. 4860 records in RAM.
INFO 2026-06-08 08:25:43 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:17:12s. Time for last 1,000,000: 1s. Last read position: chrX:129,920,484
INFO 2026-06-08 08:25:43 MarkDuplicates Tracking 40314 as yet unmatched pairs. 3725 records in RAM.
INFO 2026-06-08 08:25:45 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:17:14s. Time for last 1,000,000: 1s. Last read position: chrX:152,858,793
INFO 2026-06-08 08:25:45 MarkDuplicates Tracking 39490 as yet unmatched pairs. 2901 records in RAM.
INFO 2026-06-08 08:25:46 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:17:16s. Time for last 1,000,000: 1s. Last read position: chrX:154,354,996
INFO 2026-06-08 08:25:46 MarkDuplicates Tracking 38291 as yet unmatched pairs. 1700 records in RAM.
INFO 2026-06-08 08:25:48 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:17:17s. Time for last 1,000,000: 1s. Last read position: chrX:155,382,995
INFO 2026-06-08 08:25:48 MarkDuplicates Tracking 36691 as yet unmatched pairs. 100 records in RAM.
INFO 2026-06-08 08:25:50 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:17:19s. Time for last 1,000,000: 1s. Last read position: chrM:6,798
INFO 2026-06-08 08:25:50 MarkDuplicates Tracking 36501 as yet unmatched pairs. 875 records in RAM.
INFO 2026-06-08 08:25:51 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:17:20s. Time for last 1,000,000: 1s. Last read position: GL000220.1:111,296
INFO 2026-06-08 08:25:51 MarkDuplicates Tracking 35207 as yet unmatched pairs. 5902 records in RAM.
INFO 2026-06-08 08:25:52 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:17:22s. Time for last 1,000,000: 1s. Last read position: GL000220.1:114,141
INFO 2026-06-08 08:25:52 MarkDuplicates Tracking 34347 as yet unmatched pairs. 5042 records in RAM.
INFO 2026-06-08 08:25:54 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:17:23s. Time for last 1,000,000: 1s. Last read position: GL000220.1:116,303
INFO 2026-06-08 08:25:54 MarkDuplicates Tracking 29667 as yet unmatched pairs. 362 records in RAM.
INFO 2026-06-08 08:25:55 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:17:24s. Time for last 1,000,000: 1s. Last read position: GL000220.1:116,644
INFO 2026-06-08 08:25:55 MarkDuplicates Tracking 29704 as yet unmatched pairs. 399 records in RAM.
INFO 2026-06-08 08:25:57 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:17:26s. Time for last 1,000,000: 1s. Last read position: GL000220.1:152,802
INFO 2026-06-08 08:25:57 MarkDuplicates Tracking 29682 as yet unmatched pairs. 377 records in RAM.
INFO 2026-06-08 08:25:59 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:17:28s. Time for last 1,000,000: 1s. Last read position: GL000220.1:157,563
INFO 2026-06-08 08:25:59 MarkDuplicates Tracking 29660 as yet unmatched pairs. 355 records in RAM.
INFO 2026-06-08 08:26:01 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:17:30s. Time for last 1,000,000: 2s. Last read position: GL000220.1:159,530
INFO 2026-06-08 08:26:01 MarkDuplicates Tracking 29406 as yet unmatched pairs. 101 records in RAM.
INFO 2026-06-08 08:26:02 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:17:31s. Time for last 1,000,000: 1s. Last read position: GL000220.1:160,455
INFO 2026-06-08 08:26:02 MarkDuplicates Tracking 29357 as yet unmatched pairs. 52 records in RAM.
INFO 2026-06-08 08:26:04 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:17:33s. Time for last 1,000,000: 1s. Last read position: KI270733.1:124,558
INFO 2026-06-08 08:26:04 MarkDuplicates Tracking 29388 as yet unmatched pairs. 29372 records in RAM.
INFO 2026-06-08 08:26:05 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:17:34s. Time for last 1,000,000: 1s. Last read position: KI270733.1:129,615
INFO 2026-06-08 08:26:05 MarkDuplicates Tracking 28793 as yet unmatched pairs. 28777 records in RAM.
INFO 2026-06-08 08:26:06 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:17:35s. Time for last 1,000,000: 1s. Last read position: KI270733.1:130,998
INFO 2026-06-08 08:26:06 MarkDuplicates Tracking 28015 as yet unmatched pairs. 27999 records in RAM.
INFO 2026-06-08 08:26:07 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:17:36s. Time for last 1,000,000: 1s. Last read position: KI270733.1:133,166
INFO 2026-06-08 08:26:07 MarkDuplicates Tracking 21291 as yet unmatched pairs. 21275 records in RAM.
INFO 2026-06-08 08:26:08 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:17:38s. Time for last 1,000,000: 1s. Last read position: KI270733.1:133,591
INFO 2026-06-08 08:26:08 MarkDuplicates Tracking 24120 as yet unmatched pairs. 24104 records in RAM.
INFO 2026-06-08 08:26:10 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:17:39s. Time for last 1,000,000: 1s. Last read position: KI270733.1:170,762
INFO 2026-06-08 08:26:10 MarkDuplicates Tracking 17515 as yet unmatched pairs. 17499 records in RAM.
INFO 2026-06-08 08:26:11 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:17:40s. Time for last 1,000,000: 1s. Last read position: KI270733.1:174,678
INFO 2026-06-08 08:26:11 MarkDuplicates Tracking 47130 as yet unmatched pairs. 47114 records in RAM.
INFO 2026-06-08 08:26:13 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:17:42s. Time for last 1,000,000: 1s. Last read position: KI270733.1:175,856
INFO 2026-06-08 08:26:13 MarkDuplicates Tracking 307 as yet unmatched pairs. 291 records in RAM.
INFO 2026-06-08 08:26:14 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:17:43s. Time for last 1,000,000: 1s. Last read position: KI270733.1:178,203
INFO 2026-06-08 08:26:14 MarkDuplicates Tracking 145 as yet unmatched pairs. 129 records in RAM.
INFO 2026-06-08 08:26:15 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:17:44s. Time for last 1,000,000: 1s. Last read position: KI270733.1:178,486
INFO 2026-06-08 08:26:15 MarkDuplicates Tracking 62 as yet unmatched pairs. 46 records in RAM.
INFO 2026-06-08 08:26:16 MarkDuplicates Read 519602592 records. 0 pairs never matched.
INFO 2026-06-08 08:27:26 MarkDuplicates After buildSortedReadEndLists freeMemory: 42854085480; totalMemory: 61203283968; maxMemory: 63585648640
INFO 2026-06-08 08:27:26 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 08:27:45 MarkDuplicates Traversing read pair information and detecting duplicates.
INFO 2026-06-08 08:28:03 OpticalDuplicateFinder Large duplicate set. size = 1516
INFO 2026-06-08 08:28:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,260
INFO 2026-06-08 08:28:10 OpticalDuplicateFinder Large duplicate set. size = 1021
INFO 2026-06-08 08:28:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,110
INFO 2026-06-08 08:28:10 OpticalDuplicateFinder Large duplicate set. size = 1486
INFO 2026-06-08 08:28:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,330
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1182
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,004
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1061
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,149
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1069
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,901
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1126
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,811
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1556
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,390
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1196
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,455
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1167
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,446
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1056
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,900
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1556
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,140
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1285
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,685
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1054
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,945
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1212
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,602
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1267
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,313
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1797
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,889
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1513
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,786
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1394
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,268
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1942
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,020
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1535
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,083
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1309
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,980
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1820
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,618
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1380
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,298
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1003
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,823
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder Large duplicate set. size = 1325
INFO 2026-06-08 08:28:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,461
INFO 2026-06-08 08:28:24 OpticalDuplicateFinder Large duplicate set. size = 1489
INFO 2026-06-08 08:28:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,203
INFO 2026-06-08 08:28:25 OpticalDuplicateFinder Large duplicate set. size = 2344
INFO 2026-06-08 08:28:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,094
INFO 2026-06-08 08:28:25 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,354
INFO 2026-06-08 08:28:25 OpticalDuplicateFinder Large duplicate set. size = 1218
INFO 2026-06-08 08:28:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,429
INFO 2026-06-08 08:28:25 OpticalDuplicateFinder Large duplicate set. size = 1281
INFO 2026-06-08 08:28:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,886
INFO 2026-06-08 08:28:25 OpticalDuplicateFinder Large duplicate set. size = 2062
INFO 2026-06-08 08:28:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,154
INFO 2026-06-08 08:28:25 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,348
INFO 2026-06-08 08:28:25 OpticalDuplicateFinder Large duplicate set. size = 2900
INFO 2026-06-08 08:28:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,137
INFO 2026-06-08 08:28:25 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,362
INFO 2026-06-08 08:28:25 OpticalDuplicateFinder Large duplicate set. size = 2203
INFO 2026-06-08 08:28:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,367
INFO 2026-06-08 08:28:25 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,092
INFO 2026-06-08 08:28:25 OpticalDuplicateFinder Large duplicate set. size = 1281
INFO 2026-06-08 08:28:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,281
INFO 2026-06-08 08:28:25 OpticalDuplicateFinder Large duplicate set. size = 1247
INFO 2026-06-08 08:28:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,140
INFO 2026-06-08 08:28:25 OpticalDuplicateFinder Large duplicate set. size = 1710
INFO 2026-06-08 08:28:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,330
INFO 2026-06-08 08:28:25 OpticalDuplicateFinder Large duplicate set. size = 1412
INFO 2026-06-08 08:28:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,297
INFO 2026-06-08 08:28:25 OpticalDuplicateFinder Large duplicate set. size = 1041
INFO 2026-06-08 08:28:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,834
INFO 2026-06-08 08:28:25 OpticalDuplicateFinder Large duplicate set. size = 1053
INFO 2026-06-08 08:28:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,356
INFO 2026-06-08 08:28:25 OpticalDuplicateFinder Large duplicate set. size = 1360
INFO 2026-06-08 08:28:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,359
INFO 2026-06-08 08:28:25 OpticalDuplicateFinder Large duplicate set. size = 1020
INFO 2026-06-08 08:28:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,239
INFO 2026-06-08 08:28:25 OpticalDuplicateFinder Large duplicate set. size = 1144
INFO 2026-06-08 08:28:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,197
INFO 2026-06-08 08:28:25 OpticalDuplicateFinder Large duplicate set. size = 1277
INFO 2026-06-08 08:28:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,436
INFO 2026-06-08 08:28:25 OpticalDuplicateFinder Large duplicate set. size = 1677
INFO 2026-06-08 08:28:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,184
INFO 2026-06-08 08:28:25 OpticalDuplicateFinder Large duplicate set. size = 1126
INFO 2026-06-08 08:28:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,207
INFO 2026-06-08 08:28:25 OpticalDuplicateFinder Large duplicate set. size = 1517
INFO 2026-06-08 08:28:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,432
INFO 2026-06-08 08:28:25 OpticalDuplicateFinder Large duplicate set. size = 1055
INFO 2026-06-08 08:28:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,244
INFO 2026-06-08 08:28:37 OpticalDuplicateFinder Large duplicate set. size = 1175
INFO 2026-06-08 08:28:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,003
INFO 2026-06-08 08:28:37 OpticalDuplicateFinder Large duplicate set. size = 1044
INFO 2026-06-08 08:28:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,114
INFO 2026-06-08 08:28:37 OpticalDuplicateFinder Large duplicate set. size = 1357
INFO 2026-06-08 08:28:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,348
INFO 2026-06-08 08:28:38 OpticalDuplicateFinder Large duplicate set. size = 1075
INFO 2026-06-08 08:28:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,308
INFO 2026-06-08 08:28:38 OpticalDuplicateFinder Large duplicate set. size = 1211
INFO 2026-06-08 08:28:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,637
INFO 2026-06-08 08:28:38 OpticalDuplicateFinder Large duplicate set. size = 2353
INFO 2026-06-08 08:28:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,229
INFO 2026-06-08 08:28:38 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,775
INFO 2026-06-08 08:28:38 OpticalDuplicateFinder Large duplicate set. size = 1359
INFO 2026-06-08 08:28:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,842
INFO 2026-06-08 08:28:56 OpticalDuplicateFinder Large duplicate set. size = 1593
INFO 2026-06-08 08:28:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,977
INFO 2026-06-08 08:28:56 OpticalDuplicateFinder Large duplicate set. size = 1008
INFO 2026-06-08 08:28:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,084
INFO 2026-06-08 08:28:56 OpticalDuplicateFinder Large duplicate set. size = 1083
INFO 2026-06-08 08:28:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,889
INFO 2026-06-08 08:28:56 OpticalDuplicateFinder Large duplicate set. size = 1403
INFO 2026-06-08 08:28:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,909
INFO 2026-06-08 08:28:56 OpticalDuplicateFinder Large duplicate set. size = 1891
INFO 2026-06-08 08:28:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,249
INFO 2026-06-08 08:28:56 OpticalDuplicateFinder Large duplicate set. size = 1049
INFO 2026-06-08 08:28:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,302
INFO 2026-06-08 08:28:56 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 08:28:56 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:29:48 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 08:29:49 MarkDuplicates After generateDuplicateIndexes freeMemory: 204599352; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:29:49 MarkDuplicates Marking 280360430 records as duplicates.
INFO 2026-06-08 08:29:49 MarkDuplicates Found 21345988 optical duplicate clusters.
INFO 2026-06-08 08:29:49 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 08:30:06 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:17s. Time for last 10,000,000: 17s. Last read position: chr1:28,773,030
INFO 2026-06-08 08:30:23 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:34s. Time for last 10,000,000: 17s. Last read position: chr1:99,993,586
INFO 2026-06-08 08:30:40 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:51s. Time for last 10,000,000: 16s. Last read position: chr1:155,660,456
INFO 2026-06-08 08:30:57 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:08s. Time for last 10,000,000: 16s. Last read position: chr1:212,858,571
INFO 2026-06-08 08:31:14 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:25s. Time for last 10,000,000: 16s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:31:30 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:41s. Time for last 10,000,000: 16s. Last read position: chr2:99,404,461
INFO 2026-06-08 08:31:47 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:58s. Time for last 10,000,000: 16s. Last read position: chr2:207,570,177
INFO 2026-06-08 08:32:04 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:15s. Time for last 10,000,000: 17s. Last read position: chr3:33,132,587
INFO 2026-06-08 08:32:21 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:32s. Time for last 10,000,000: 17s. Last read position: chr3:119,390,848
INFO 2026-06-08 08:32:38 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:49s. Time for last 10,000,000: 16s. Last read position: chr4:957,851
INFO 2026-06-08 08:32:55 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:06s. Time for last 10,000,000: 16s. Last read position: chr4:139,698,176
INFO 2026-06-08 08:33:12 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:23s. Time for last 10,000,000: 17s. Last read position: chr5:81,706,664
INFO 2026-06-08 08:33:29 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:40s. Time for last 10,000,000: 16s. Last read position: chr5:154,803,598
INFO 2026-06-08 08:33:46 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:56s. Time for last 10,000,000: 16s. Last read position: chr6:27,810,269
INFO 2026-06-08 08:34:02 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:13s. Time for last 10,000,000: 16s. Last read position: chr6:43,369,206
INFO 2026-06-08 08:34:19 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:30s. Time for last 10,000,000: 16s. Last read position: chr6:157,190,174
INFO 2026-06-08 08:34:37 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:48s. Time for last 10,000,000: 17s. Last read position: chr7:56,104,407
INFO 2026-06-08 08:34:54 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:05s. Time for last 10,000,000: 16s. Last read position: chr7:120,438,208
INFO 2026-06-08 08:35:10 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:21s. Time for last 10,000,000: 16s. Last read position: chr8:30,703,185
INFO 2026-06-08 08:35:27 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:38s. Time for last 10,000,000: 16s. Last read position: chr8:143,581,060
INFO 2026-06-08 08:35:44 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:55s. Time for last 10,000,000: 16s. Last read position: chr9:85,692,768
INFO 2026-06-08 08:36:01 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:12s. Time for last 10,000,000: 16s. Last read position: chr9:135,938,275
INFO 2026-06-08 08:36:18 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:29s. Time for last 10,000,000: 16s. Last read position: chr10:75,030,388
INFO 2026-06-08 08:36:35 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:45s. Time for last 10,000,000: 16s. Last read position: chr11:1,761,371
INFO 2026-06-08 08:36:51 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:02s. Time for last 10,000,000: 16s. Last read position: chr11:64,343,180
INFO 2026-06-08 08:37:09 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:19s. Time for last 10,000,000: 17s. Last read position: chr11:96,147,104
INFO 2026-06-08 08:37:26 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:37s. Time for last 10,000,000: 17s. Last read position: chr12:27,317,972
INFO 2026-06-08 08:37:43 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:53s. Time for last 10,000,000: 16s. Last read position: chr12:68,615,503
INFO 2026-06-08 08:37:59 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:10s. Time for last 10,000,000: 16s. Last read position: chr12:130,875,677
INFO 2026-06-08 08:38:16 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:27s. Time for last 10,000,000: 17s. Last read position: chr14:23,566,571
INFO 2026-06-08 08:38:33 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:44s. Time for last 10,000,000: 16s. Last read position: chr14:71,105,254
INFO 2026-06-08 08:38:50 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:09:00s. Time for last 10,000,000: 16s. Last read position: chr15:40,036,455
INFO 2026-06-08 08:39:07 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:17s. Time for last 10,000,000: 16s. Last read position: chr15:78,541,921
INFO 2026-06-08 08:39:23 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:34s. Time for last 10,000,000: 16s. Last read position: chr16:12,524,724
INFO 2026-06-08 08:39:40 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:51s. Time for last 10,000,000: 16s. Last read position: chr16:29,454,022
INFO 2026-06-08 08:39:57 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:08s. Time for last 10,000,000: 17s. Last read position: chr16:70,381,699
INFO 2026-06-08 08:40:14 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:25s. Time for last 10,000,000: 16s. Last read position: chr17:7,513,406
INFO 2026-06-08 08:40:31 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:41s. Time for last 10,000,000: 16s. Last read position: chr17:39,658,488
INFO 2026-06-08 08:40:48 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:59s. Time for last 10,000,000: 17s. Last read position: chr17:68,042,911
INFO 2026-06-08 08:41:05 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:16s. Time for last 10,000,000: 17s. Last read position: chr18:36,114,454
INFO 2026-06-08 08:41:22 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:33s. Time for last 10,000,000: 16s. Last read position: chr19:5,220,112
INFO 2026-06-08 08:41:39 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:50s. Time for last 10,000,000: 17s. Last read position: chr19:17,726,496
INFO 2026-06-08 08:41:56 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:12:06s. Time for last 10,000,000: 16s. Last read position: chr19:42,272,242
INFO 2026-06-08 08:42:13 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:12:24s. Time for last 10,000,000: 17s. Last read position: chr19:55,642,587
INFO 2026-06-08 08:42:30 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:41s. Time for last 10,000,000: 17s. Last read position: chr20:57,500,532
INFO 2026-06-08 08:42:46 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:57s. Time for last 10,000,000: 15s. Last read position: chr21:8,260,314
INFO 2026-06-08 08:43:01 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:13:11s. Time for last 10,000,000: 14s. Last read position: chr21:34,708,040
INFO 2026-06-08 08:43:17 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:28s. Time for last 10,000,000: 16s. Last read position: chr22:37,755,109
INFO 2026-06-08 08:43:34 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:13:45s. Time for last 10,000,000: 17s. Last read position: chrX:46,758,720
INFO 2026-06-08 08:43:52 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:14:03s. Time for last 10,000,000: 17s. Last read position: chrX:155,382,995
INFO 2026-06-08 08:44:08 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:14:18s. Time for last 10,000,000: 15s. Last read position: KI270733.1:124,558
INFO 2026-06-08 08:44:24 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:14:35s. Time for last 10,000,000: 16s. Last read position: */*
INFO 2026-06-08 08:44:34 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 08:44:34 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 08:44:34 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 08:44:34 MarkDuplicates Before output close freeMemory: 204566056; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:44:34 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 08:44:34 MarkDuplicates After output close freeMemory: 104807144; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 08:44:34 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 36.09 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory