Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/c692fce1bcf5a64daaae35890766f3/V4_0001_RNA_0005_23H5VFLT4_s18.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/e9aa68c3ef66be559a68e44ba67d52/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/e9aa68c3ef66be559a68e44ba67d52/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/b18c31b2fe537660f435f6c4d91ac1/V4_0001_RNA_0005_23H5VFLT4_s18.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory