Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT tih_rna_sample_00097_23H5VFLT4_s12.Aligned.sortedByCoord.out.bam --OUTPUT tih_rna_sample_00097_23H5VFLT4_s12.md.bam --METRICS_FILE tih_rna_sample_00097_23H5VFLT4_s12.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:18:42.291 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:18:42 GMT 2026] MarkDuplicates --INPUT tih_rna_sample_00097_23H5VFLT4_s12.Aligned.sortedByCoord.out.bam --OUTPUT tih_rna_sample_00097_23H5VFLT4_s12.md.bam --METRICS_FILE tih_rna_sample_00097_23H5VFLT4_s12.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:18:42 GMT 2026] Executing as ?@nf-c4d3a732d2e84831f3a38d542ee18542-aceff-tmhpq on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:18:42 MarkDuplicates Start of doWork freeMemory: 105492936; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:18:42 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:18:42 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:18:47 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 3s. Last read position: chr1:1,203,678
INFO 2026-06-08 08:18:47 MarkDuplicates Tracking 919 as yet unmatched pairs. 222 records in RAM.
INFO 2026-06-08 08:18:49 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:1,544,885
INFO 2026-06-08 08:18:49 MarkDuplicates Tracking 1911 as yet unmatched pairs. 380 records in RAM.
INFO 2026-06-08 08:18:51 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 2s. Last read position: chr1:6,089,008
INFO 2026-06-08 08:18:51 MarkDuplicates Tracking 2313 as yet unmatched pairs. 66 records in RAM.
INFO 2026-06-08 08:18:54 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 2s. Last read position: chr1:8,861,277
INFO 2026-06-08 08:18:54 MarkDuplicates Tracking 3743 as yet unmatched pairs. 729 records in RAM.
INFO 2026-06-08 08:18:57 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 2s. Last read position: chr1:10,419,644
INFO 2026-06-08 08:18:57 MarkDuplicates Tracking 3893 as yet unmatched pairs. 147 records in RAM.
INFO 2026-06-08 08:18:58 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 1s. Last read position: chr1:11,925,816
INFO 2026-06-08 08:18:58 MarkDuplicates Tracking 4592 as yet unmatched pairs. 108 records in RAM.
INFO 2026-06-08 08:19:01 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 2s. Last read position: chr1:15,638,295
INFO 2026-06-08 08:19:01 MarkDuplicates Tracking 5343 as yet unmatched pairs. 190 records in RAM.
INFO 2026-06-08 08:19:03 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 1s. Last read position: chr1:17,018,918
INFO 2026-06-08 08:19:03 MarkDuplicates Tracking 6031 as yet unmatched pairs. 303 records in RAM.
INFO 2026-06-08 08:19:06 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 3s. Last read position: chr1:20,589,156
INFO 2026-06-08 08:19:06 MarkDuplicates Tracking 6456 as yet unmatched pairs. 62 records in RAM.
INFO 2026-06-08 08:19:08 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 2s. Last read position: chr1:22,086,813
INFO 2026-06-08 08:19:08 MarkDuplicates Tracking 8507 as yet unmatched pairs. 1357 records in RAM.
INFO 2026-06-08 08:19:11 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 2s. Last read position: chr1:23,751,882
INFO 2026-06-08 08:19:11 MarkDuplicates Tracking 8103 as yet unmatched pairs. 169 records in RAM.
INFO 2026-06-08 08:19:13 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 2s. Last read position: chr1:26,774,445
INFO 2026-06-08 08:19:13 MarkDuplicates Tracking 8802 as yet unmatched pairs. 204 records in RAM.
INFO 2026-06-08 08:19:15 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 2s. Last read position: chr1:28,564,961
INFO 2026-06-08 08:19:15 MarkDuplicates Tracking 9414 as yet unmatched pairs. 103 records in RAM.
INFO 2026-06-08 08:19:17 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 1s. Last read position: chr1:31,915,964
INFO 2026-06-08 08:19:17 MarkDuplicates Tracking 10977 as yet unmatched pairs. 990 records in RAM.
INFO 2026-06-08 08:19:19 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 2s. Last read position: chr1:33,331,429
INFO 2026-06-08 08:19:19 MarkDuplicates Tracking 10819 as yet unmatched pairs. 168 records in RAM.
INFO 2026-06-08 08:19:21 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:36,473,534
INFO 2026-06-08 08:19:21 MarkDuplicates Tracking 11494 as yet unmatched pairs. 102 records in RAM.
INFO 2026-06-08 08:19:23 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 2s. Last read position: chr1:40,061,741
INFO 2026-06-08 08:19:23 MarkDuplicates Tracking 12620 as yet unmatched pairs. 633 records in RAM.
INFO 2026-06-08 08:19:26 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 2s. Last read position: chr1:43,448,242
INFO 2026-06-08 08:19:26 MarkDuplicates Tracking 12721 as yet unmatched pairs. 70 records in RAM.
INFO 2026-06-08 08:19:28 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 2s. Last read position: chr1:44,777,622
INFO 2026-06-08 08:19:28 MarkDuplicates Tracking 14898 as yet unmatched pairs. 1565 records in RAM.
INFO 2026-06-08 08:19:30 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 1s. Last read position: chr1:46,691,857
INFO 2026-06-08 08:19:30 MarkDuplicates Tracking 14245 as yet unmatched pairs. 226 records in RAM.
INFO 2026-06-08 08:19:32 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 2s. Last read position: chr1:53,258,362
INFO 2026-06-08 08:19:32 MarkDuplicates Tracking 14776 as yet unmatched pairs. 131 records in RAM.
INFO 2026-06-08 08:19:34 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:58,576,685
INFO 2026-06-08 08:19:34 MarkDuplicates Tracking 18322 as yet unmatched pairs. 2988 records in RAM.
INFO 2026-06-08 08:19:36 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:66,922,240
INFO 2026-06-08 08:19:36 MarkDuplicates Tracking 16132 as yet unmatched pairs. 76 records in RAM.
INFO 2026-06-08 08:19:37 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:78,013,367
INFO 2026-06-08 08:19:37 MarkDuplicates Tracking 16822 as yet unmatched pairs. 184 records in RAM.
INFO 2026-06-08 08:19:39 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:89,011,816
INFO 2026-06-08 08:19:39 MarkDuplicates Tracking 17344 as yet unmatched pairs. 85 records in RAM.
INFO 2026-06-08 08:19:42 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 2s. Last read position: chr1:96,448,243
INFO 2026-06-08 08:19:42 MarkDuplicates Tracking 17967 as yet unmatched pairs. 60 records in RAM.
INFO 2026-06-08 08:19:44 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 2s. Last read position: chr1:108,185,919
INFO 2026-06-08 08:19:44 MarkDuplicates Tracking 18780 as yet unmatched pairs. 415 records in RAM.
INFO 2026-06-08 08:19:46 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 2s. Last read position: chr1:110,339,668
INFO 2026-06-08 08:19:46 MarkDuplicates Tracking 19068 as yet unmatched pairs. 99 records in RAM.
INFO 2026-06-08 08:19:49 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 2s. Last read position: chr1:114,405,524
INFO 2026-06-08 08:19:49 MarkDuplicates Tracking 19968 as yet unmatched pairs. 378 records in RAM.
INFO 2026-06-08 08:19:51 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 2s. Last read position: chr1:117,778,567
INFO 2026-06-08 08:19:51 MarkDuplicates Tracking 20233 as yet unmatched pairs. 74 records in RAM.
INFO 2026-06-08 08:19:54 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 2s. Last read position: chr1:119,969,628
INFO 2026-06-08 08:19:54 MarkDuplicates Tracking 21412 as yet unmatched pairs. 554 records in RAM.
INFO 2026-06-08 08:19:55 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:143,905,837
INFO 2026-06-08 08:19:55 MarkDuplicates Tracking 21215 as yet unmatched pairs. 62 records in RAM.
INFO 2026-06-08 08:19:57 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:146,139,817
INFO 2026-06-08 08:19:57 MarkDuplicates Tracking 22236 as yet unmatched pairs. 742 records in RAM.
INFO 2026-06-08 08:19:58 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:148,544,286
INFO 2026-06-08 08:19:58 MarkDuplicates Tracking 21891 as yet unmatched pairs. 72 records in RAM.
INFO 2026-06-08 08:20:00 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:149,607,469
INFO 2026-06-08 08:20:00 MarkDuplicates Tracking 22144 as yet unmatched pairs. 76 records in RAM.
INFO 2026-06-08 08:20:01 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:149,852,617
INFO 2026-06-08 08:20:01 MarkDuplicates Tracking 22720 as yet unmatched pairs. 89 records in RAM.
INFO 2026-06-08 08:20:03 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:150,266,597
INFO 2026-06-08 08:20:03 MarkDuplicates Tracking 24235 as yet unmatched pairs. 1224 records in RAM.
INFO 2026-06-08 08:20:06 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 2s. Last read position: chr1:150,629,426
INFO 2026-06-08 08:20:06 MarkDuplicates Tracking 24241 as yet unmatched pairs. 494 records in RAM.
INFO 2026-06-08 08:20:07 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:151,286,710
INFO 2026-06-08 08:20:07 MarkDuplicates Tracking 24671 as yet unmatched pairs. 325 records in RAM.
INFO 2026-06-08 08:20:09 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:152,033,696
INFO 2026-06-08 08:20:09 MarkDuplicates Tracking 25844 as yet unmatched pairs. 753 records in RAM.
INFO 2026-06-08 08:20:11 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 2s. Last read position: chr1:153,360,690
INFO 2026-06-08 08:20:11 MarkDuplicates Tracking 40299 as yet unmatched pairs. 14697 records in RAM.
INFO 2026-06-08 08:20:13 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 2s. Last read position: chr1:153,390,435
INFO 2026-06-08 08:20:13 MarkDuplicates Tracking 26583 as yet unmatched pairs. 332 records in RAM.
INFO 2026-06-08 08:20:15 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:153,645,137
INFO 2026-06-08 08:20:15 MarkDuplicates Tracking 27119 as yet unmatched pairs. 229 records in RAM.
INFO 2026-06-08 08:20:18 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 2s. Last read position: chr1:154,157,297
INFO 2026-06-08 08:20:18 MarkDuplicates Tracking 27805 as yet unmatched pairs. 269 records in RAM.
INFO 2026-06-08 08:20:21 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 2s. Last read position: chr1:154,235,258
INFO 2026-06-08 08:20:21 MarkDuplicates Tracking 28510 as yet unmatched pairs. 324 records in RAM.
INFO 2026-06-08 08:20:23 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 2s. Last read position: chr1:154,965,619
INFO 2026-06-08 08:20:23 MarkDuplicates Tracking 31322 as yet unmatched pairs. 2442 records in RAM.
INFO 2026-06-08 08:20:25 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr1:155,058,124
INFO 2026-06-08 08:20:25 MarkDuplicates Tracking 30270 as yet unmatched pairs. 583 records in RAM.
INFO 2026-06-08 08:20:27 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr1:155,265,869
INFO 2026-06-08 08:20:27 MarkDuplicates Tracking 30535 as yet unmatched pairs. 141 records in RAM.
INFO 2026-06-08 08:20:28 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr1:155,766,461
INFO 2026-06-08 08:20:28 MarkDuplicates Tracking 31160 as yet unmatched pairs. 191 records in RAM.
INFO 2026-06-08 08:20:30 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 2s. Last read position: chr1:156,135,898
INFO 2026-06-08 08:20:30 MarkDuplicates Tracking 33173 as yet unmatched pairs. 1416 records in RAM.
INFO 2026-06-08 08:20:33 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 2s. Last read position: chr1:156,293,430
INFO 2026-06-08 08:20:33 MarkDuplicates Tracking 33075 as yet unmatched pairs. 484 records in RAM.
INFO 2026-06-08 08:20:34 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr1:156,743,831
INFO 2026-06-08 08:20:34 MarkDuplicates Tracking 33511 as yet unmatched pairs. 242 records in RAM.
INFO 2026-06-08 08:20:36 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr1:160,031,173
INFO 2026-06-08 08:20:36 MarkDuplicates Tracking 34256 as yet unmatched pairs. 328 records in RAM.
INFO 2026-06-08 08:20:38 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 1s. Last read position: chr1:161,001,097
INFO 2026-06-08 08:20:38 MarkDuplicates Tracking 36637 as yet unmatched pairs. 1937 records in RAM.
INFO 2026-06-08 08:20:40 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr1:161,506,454
INFO 2026-06-08 08:20:40 MarkDuplicates Tracking 35692 as yet unmatched pairs. 225 records in RAM.
INFO 2026-06-08 08:20:42 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 2s. Last read position: chr1:165,827,556
INFO 2026-06-08 08:20:42 MarkDuplicates Tracking 36088 as yet unmatched pairs. 41 records in RAM.
INFO 2026-06-08 08:20:44 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 2s. Last read position: chr1:170,552,397
INFO 2026-06-08 08:20:44 MarkDuplicates Tracking 36779 as yet unmatched pairs. 92 records in RAM.
INFO 2026-06-08 08:20:46 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr1:173,838,221
INFO 2026-06-08 08:20:46 MarkDuplicates Tracking 38653 as yet unmatched pairs. 1372 records in RAM.
INFO 2026-06-08 08:20:48 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 2s. Last read position: chr1:179,593,713
INFO 2026-06-08 08:20:48 MarkDuplicates Tracking 38052 as yet unmatched pairs. 129 records in RAM.
INFO 2026-06-08 08:20:50 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr1:182,872,460
INFO 2026-06-08 08:20:50 MarkDuplicates Tracking 38812 as yet unmatched pairs. 308 records in RAM.
INFO 2026-06-08 08:20:51 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 1s. Last read position: chr1:186,318,463
INFO 2026-06-08 08:20:51 MarkDuplicates Tracking 40130 as yet unmatched pairs. 987 records in RAM.
INFO 2026-06-08 08:20:55 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 3s. Last read position: chr1:193,023,898
INFO 2026-06-08 08:20:55 MarkDuplicates Tracking 40209 as yet unmatched pairs. 591 records in RAM.
INFO 2026-06-08 08:20:57 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 2s. Last read position: chr1:200,912,092
INFO 2026-06-08 08:20:57 MarkDuplicates Tracking 40625 as yet unmatched pairs. 426 records in RAM.
INFO 2026-06-08 08:20:59 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 2s. Last read position: chr1:202,573,332
INFO 2026-06-08 08:20:59 MarkDuplicates Tracking 40971 as yet unmatched pairs. 70 records in RAM.
INFO 2026-06-08 08:21:01 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr1:203,182,731
INFO 2026-06-08 08:21:01 MarkDuplicates Tracking 42091 as yet unmatched pairs. 530 records in RAM.
INFO 2026-06-08 08:21:03 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr1:204,132,145
INFO 2026-06-08 08:21:03 MarkDuplicates Tracking 42250 as yet unmatched pairs. 57 records in RAM.
INFO 2026-06-08 08:21:05 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 2s. Last read position: chr1:206,685,208
INFO 2026-06-08 08:21:05 MarkDuplicates Tracking 43001 as yet unmatched pairs. 128 records in RAM.
INFO 2026-06-08 08:21:07 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr1:209,783,274
INFO 2026-06-08 08:21:07 MarkDuplicates Tracking 45220 as yet unmatched pairs. 1696 records in RAM.
INFO 2026-06-08 08:21:09 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 2s. Last read position: chr1:212,433,044
INFO 2026-06-08 08:21:09 MarkDuplicates Tracking 45077 as yet unmatched pairs. 915 records in RAM.
INFO 2026-06-08 08:21:11 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 2s. Last read position: chr1:220,020,192
INFO 2026-06-08 08:21:11 MarkDuplicates Tracking 45180 as yet unmatched pairs. 418 records in RAM.
INFO 2026-06-08 08:21:14 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 2s. Last read position: chr1:223,712,831
INFO 2026-06-08 08:21:14 MarkDuplicates Tracking 46277 as yet unmatched pairs. 875 records in RAM.
INFO 2026-06-08 08:21:16 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr1:225,517,338
INFO 2026-06-08 08:21:16 MarkDuplicates Tracking 46175 as yet unmatched pairs. 191 records in RAM.
INFO 2026-06-08 08:21:18 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr1:227,732,470
INFO 2026-06-08 08:21:18 MarkDuplicates Tracking 46821 as yet unmatched pairs. 213 records in RAM.
INFO 2026-06-08 08:21:19 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr1:228,323,379
INFO 2026-06-08 08:21:19 MarkDuplicates Tracking 47892 as yet unmatched pairs. 412 records in RAM.
INFO 2026-06-08 08:21:21 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr1:230,855,703
INFO 2026-06-08 08:21:21 MarkDuplicates Tracking 48599 as yet unmatched pairs. 268 records in RAM.
INFO 2026-06-08 08:21:23 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr1:234,609,030
INFO 2026-06-08 08:21:23 MarkDuplicates Tracking 49207 as yet unmatched pairs. 132 records in RAM.
INFO 2026-06-08 08:21:25 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 2s. Last read position: chr1:236,595,559
INFO 2026-06-08 08:21:25 MarkDuplicates Tracking 50391 as yet unmatched pairs. 679 records in RAM.
INFO 2026-06-08 08:21:27 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr1:244,860,388
INFO 2026-06-08 08:21:27 MarkDuplicates Tracking 52274 as yet unmatched pairs. 1969 records in RAM.
INFO 2026-06-08 08:21:30 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 2s. Last read position: chr2:3,208,758
INFO 2026-06-08 08:21:30 MarkDuplicates Tracking 51242 as yet unmatched pairs. 50194 records in RAM.
INFO 2026-06-08 08:21:31 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:9,588,215
INFO 2026-06-08 08:21:31 MarkDuplicates Tracking 52580 as yet unmatched pairs. 51526 records in RAM.
INFO 2026-06-08 08:21:33 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:15,613,223
INFO 2026-06-08 08:21:33 MarkDuplicates Tracking 52880 as yet unmatched pairs. 51811 records in RAM.
INFO 2026-06-08 08:21:36 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 2s. Last read position: chr2:20,638,548
INFO 2026-06-08 08:21:36 MarkDuplicates Tracking 53304 as yet unmatched pairs. 52221 records in RAM.
INFO 2026-06-08 08:21:38 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr2:26,191,268
INFO 2026-06-08 08:21:38 MarkDuplicates Tracking 54117 as yet unmatched pairs. 53017 records in RAM.
INFO 2026-06-08 08:21:39 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr2:27,313,071
INFO 2026-06-08 08:21:39 MarkDuplicates Tracking 54505 as yet unmatched pairs. 53402 records in RAM.
INFO 2026-06-08 08:21:42 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 2s. Last read position: chr2:28,788,695
INFO 2026-06-08 08:21:42 MarkDuplicates Tracking 63462 as yet unmatched pairs. 62352 records in RAM.
INFO 2026-06-08 08:21:44 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 2s. Last read position: chr2:32,640,354
INFO 2026-06-08 08:21:44 MarkDuplicates Tracking 55569 as yet unmatched pairs. 54444 records in RAM.
INFO 2026-06-08 08:21:46 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:21:46 MarkDuplicates Tracking 345198 as yet unmatched pairs. 27489 records in RAM.
INFO 2026-06-08 08:21:49 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 2s. Last read position: chr2:38,481,802
INFO 2026-06-08 08:21:49 MarkDuplicates Tracking 365146 as yet unmatched pairs. 25046 records in RAM.
INFO 2026-06-08 08:21:51 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 2s. Last read position: chr2:43,505,708
INFO 2026-06-08 08:21:51 MarkDuplicates Tracking 365703 as yet unmatched pairs. 25585 records in RAM.
INFO 2026-06-08 08:21:53 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr2:46,543,035
INFO 2026-06-08 08:21:53 MarkDuplicates Tracking 363934 as yet unmatched pairs. 23800 records in RAM.
INFO 2026-06-08 08:21:55 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr2:54,645,357
INFO 2026-06-08 08:21:55 MarkDuplicates Tracking 363505 as yet unmatched pairs. 23346 records in RAM.
INFO 2026-06-08 08:21:57 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr2:60,551,421
INFO 2026-06-08 08:21:57 MarkDuplicates Tracking 362686 as yet unmatched pairs. 22515 records in RAM.
INFO 2026-06-08 08:21:59 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr2:63,606,861
INFO 2026-06-08 08:21:59 MarkDuplicates Tracking 363309 as yet unmatched pairs. 23124 records in RAM.
INFO 2026-06-08 08:22:01 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr2:70,088,687
INFO 2026-06-08 08:22:01 MarkDuplicates Tracking 362108 as yet unmatched pairs. 21904 records in RAM.
INFO 2026-06-08 08:22:03 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 2s. Last read position: chr2:73,762,687
INFO 2026-06-08 08:22:03 MarkDuplicates Tracking 361618 as yet unmatched pairs. 21391 records in RAM.
INFO 2026-06-08 08:22:05 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr2:74,530,661
INFO 2026-06-08 08:22:05 MarkDuplicates Tracking 360474 as yet unmatched pairs. 20242 records in RAM.
INFO 2026-06-08 08:22:07 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr2:85,616,213
INFO 2026-06-08 08:22:07 MarkDuplicates Tracking 359736 as yet unmatched pairs. 19494 records in RAM.
INFO 2026-06-08 08:22:09 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 2s. Last read position: chr2:87,785,074
INFO 2026-06-08 08:22:09 MarkDuplicates Tracking 359243 as yet unmatched pairs. 18997 records in RAM.
INFO 2026-06-08 08:22:10 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr2:96,277,881
INFO 2026-06-08 08:22:10 MarkDuplicates Tracking 358706 as yet unmatched pairs. 18444 records in RAM.
INFO 2026-06-08 08:22:12 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr2:99,180,861
INFO 2026-06-08 08:22:12 MarkDuplicates Tracking 358014 as yet unmatched pairs. 17736 records in RAM.
INFO 2026-06-08 08:22:15 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 2s. Last read position: chr2:101,870,371
INFO 2026-06-08 08:22:15 MarkDuplicates Tracking 357687 as yet unmatched pairs. 17392 records in RAM.
INFO 2026-06-08 08:22:16 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr2:108,758,441
INFO 2026-06-08 08:22:16 MarkDuplicates Tracking 358250 as yet unmatched pairs. 17945 records in RAM.
INFO 2026-06-08 08:22:18 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr2:109,837,836
INFO 2026-06-08 08:22:18 MarkDuplicates Tracking 357413 as yet unmatched pairs. 17093 records in RAM.
INFO 2026-06-08 08:22:20 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr2:112,401,667
INFO 2026-06-08 08:22:20 MarkDuplicates Tracking 356426 as yet unmatched pairs. 16095 records in RAM.
INFO 2026-06-08 08:22:22 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 2s. Last read position: chr2:120,293,141
INFO 2026-06-08 08:22:22 MarkDuplicates Tracking 355799 as yet unmatched pairs. 15450 records in RAM.
INFO 2026-06-08 08:22:24 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 2s. Last read position: chr2:131,484,049
INFO 2026-06-08 08:22:24 MarkDuplicates Tracking 355205 as yet unmatched pairs. 14844 records in RAM.
INFO 2026-06-08 08:22:26 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 2s. Last read position: chr2:149,582,141
INFO 2026-06-08 08:22:26 MarkDuplicates Tracking 355247 as yet unmatched pairs. 14875 records in RAM.
INFO 2026-06-08 08:22:28 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr2:159,743,110
INFO 2026-06-08 08:22:28 MarkDuplicates Tracking 354358 as yet unmatched pairs. 13948 records in RAM.
INFO 2026-06-08 08:22:30 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr2:169,800,957
INFO 2026-06-08 08:22:30 MarkDuplicates Tracking 354555 as yet unmatched pairs. 14122 records in RAM.
INFO 2026-06-08 08:22:32 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr2:173,266,063
INFO 2026-06-08 08:22:32 MarkDuplicates Tracking 353109 as yet unmatched pairs. 12646 records in RAM.
INFO 2026-06-08 08:22:34 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr2:177,231,416
INFO 2026-06-08 08:22:34 MarkDuplicates Tracking 352691 as yet unmatched pairs. 12218 records in RAM.
INFO 2026-06-08 08:22:36 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 2s. Last read position: chr2:181,060,715
INFO 2026-06-08 08:22:36 MarkDuplicates Tracking 352451 as yet unmatched pairs. 11967 records in RAM.
INFO 2026-06-08 08:22:38 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 2s. Last read position: chr2:186,652,013
INFO 2026-06-08 08:22:38 MarkDuplicates Tracking 352960 as yet unmatched pairs. 12457 records in RAM.
INFO 2026-06-08 08:22:40 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr2:189,010,194
INFO 2026-06-08 08:22:40 MarkDuplicates Tracking 352213 as yet unmatched pairs. 11696 records in RAM.
INFO 2026-06-08 08:22:42 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr2:190,978,858
INFO 2026-06-08 08:22:42 MarkDuplicates Tracking 350363 as yet unmatched pairs. 9843 records in RAM.
INFO 2026-06-08 08:22:44 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 2s. Last read position: chr2:200,817,232
INFO 2026-06-08 08:22:44 MarkDuplicates Tracking 349632 as yet unmatched pairs. 9104 records in RAM.
INFO 2026-06-08 08:22:46 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr2:206,159,916
INFO 2026-06-08 08:22:46 MarkDuplicates Tracking 349588 as yet unmatched pairs. 9040 records in RAM.
INFO 2026-06-08 08:22:48 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr2:210,606,738
INFO 2026-06-08 08:22:48 MarkDuplicates Tracking 350680 as yet unmatched pairs. 10127 records in RAM.
INFO 2026-06-08 08:22:50 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr2:215,364,884
INFO 2026-06-08 08:22:50 MarkDuplicates Tracking 352983 as yet unmatched pairs. 12412 records in RAM.
INFO 2026-06-08 08:22:52 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 2s. Last read position: chr2:215,375,350
INFO 2026-06-08 08:22:52 MarkDuplicates Tracking 349015 as yet unmatched pairs. 8444 records in RAM.
INFO 2026-06-08 08:22:54 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr2:215,384,926
INFO 2026-06-08 08:22:54 MarkDuplicates Tracking 348923 as yet unmatched pairs. 8349 records in RAM.
INFO 2026-06-08 08:22:56 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr2:215,404,489
INFO 2026-06-08 08:22:56 MarkDuplicates Tracking 351940 as yet unmatched pairs. 11365 records in RAM.
INFO 2026-06-08 08:22:58 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 2s. Last read position: chr2:215,419,252
INFO 2026-06-08 08:22:58 MarkDuplicates Tracking 349141 as yet unmatched pairs. 8541 records in RAM.
INFO 2026-06-08 08:23:00 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 2s. Last read position: chr2:216,096,187
INFO 2026-06-08 08:23:00 MarkDuplicates Tracking 344535 as yet unmatched pairs. 3931 records in RAM.
INFO 2026-06-08 08:23:03 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 2s. Last read position: chr2:218,747,652
INFO 2026-06-08 08:23:03 MarkDuplicates Tracking 344082 as yet unmatched pairs. 3458 records in RAM.
INFO 2026-06-08 08:23:05 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 2s. Last read position: chr2:223,878,680
INFO 2026-06-08 08:23:05 MarkDuplicates Tracking 343349 as yet unmatched pairs. 2664 records in RAM.
INFO 2026-06-08 08:23:08 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 2s. Last read position: chr2:231,165,227
INFO 2026-06-08 08:23:08 MarkDuplicates Tracking 342742 as yet unmatched pairs. 2047 records in RAM.
INFO 2026-06-08 08:23:10 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr2:237,345,061
INFO 2026-06-08 08:23:10 MarkDuplicates Tracking 342739 as yet unmatched pairs. 2026 records in RAM.
INFO 2026-06-08 08:23:11 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr2:240,463,416
INFO 2026-06-08 08:23:11 MarkDuplicates Tracking 341532 as yet unmatched pairs. 795 records in RAM.
INFO 2026-06-08 08:23:13 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr3:4,979,710
INFO 2026-06-08 08:23:13 MarkDuplicates Tracking 340888 as yet unmatched pairs. 16275 records in RAM.
INFO 2026-06-08 08:23:15 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr3:12,492,197
INFO 2026-06-08 08:23:15 MarkDuplicates Tracking 340062 as yet unmatched pairs. 15441 records in RAM.
INFO 2026-06-08 08:23:17 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr3:15,738,525
INFO 2026-06-08 08:23:17 MarkDuplicates Tracking 339638 as yet unmatched pairs. 14996 records in RAM.
INFO 2026-06-08 08:23:19 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr3:28,324,104
INFO 2026-06-08 08:23:19 MarkDuplicates Tracking 339555 as yet unmatched pairs. 14891 records in RAM.
INFO 2026-06-08 08:23:20 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr3:38,009,297
INFO 2026-06-08 08:23:20 MarkDuplicates Tracking 338477 as yet unmatched pairs. 13785 records in RAM.
INFO 2026-06-08 08:23:22 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr3:41,224,548
INFO 2026-06-08 08:23:22 MarkDuplicates Tracking 340288 as yet unmatched pairs. 15585 records in RAM.
INFO 2026-06-08 08:23:24 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 2s. Last read position: chr3:46,709,040
INFO 2026-06-08 08:23:24 MarkDuplicates Tracking 337165 as yet unmatched pairs. 12441 records in RAM.
INFO 2026-06-08 08:23:26 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr3:48,412,484
INFO 2026-06-08 08:23:26 MarkDuplicates Tracking 336597 as yet unmatched pairs. 11864 records in RAM.
INFO 2026-06-08 08:23:28 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr3:49,026,401
INFO 2026-06-08 08:23:28 MarkDuplicates Tracking 336233 as yet unmatched pairs. 11490 records in RAM.
INFO 2026-06-08 08:23:30 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 2s. Last read position: chr3:49,676,933
INFO 2026-06-08 08:23:30 MarkDuplicates Tracking 335446 as yet unmatched pairs. 10694 records in RAM.
INFO 2026-06-08 08:23:33 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 2s. Last read position: chr3:51,970,054
INFO 2026-06-08 08:23:33 MarkDuplicates Tracking 334934 as yet unmatched pairs. 10171 records in RAM.
INFO 2026-06-08 08:23:34 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr3:52,522,641
INFO 2026-06-08 08:23:34 MarkDuplicates Tracking 334016 as yet unmatched pairs. 9246 records in RAM.
INFO 2026-06-08 08:23:37 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 2s. Last read position: chr3:57,597,084
INFO 2026-06-08 08:23:37 MarkDuplicates Tracking 333353 as yet unmatched pairs. 8572 records in RAM.
INFO 2026-06-08 08:23:39 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 2s. Last read position: chr3:69,055,424
INFO 2026-06-08 08:23:39 MarkDuplicates Tracking 332826 as yet unmatched pairs. 8028 records in RAM.
INFO 2026-06-08 08:23:41 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr3:100,261,056
INFO 2026-06-08 08:23:41 MarkDuplicates Tracking 332165 as yet unmatched pairs. 7322 records in RAM.
INFO 2026-06-08 08:23:43 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr3:111,885,312
INFO 2026-06-08 08:23:43 MarkDuplicates Tracking 331781 as yet unmatched pairs. 6925 records in RAM.
INFO 2026-06-08 08:23:45 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 2s. Last read position: chr3:121,696,593
INFO 2026-06-08 08:23:45 MarkDuplicates Tracking 330923 as yet unmatched pairs. 6051 records in RAM.
INFO 2026-06-08 08:23:46 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr3:127,578,175
INFO 2026-06-08 08:23:46 MarkDuplicates Tracking 330257 as yet unmatched pairs. 5371 records in RAM.
INFO 2026-06-08 08:23:48 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 2s. Last read position: chr3:129,571,779
INFO 2026-06-08 08:23:48 MarkDuplicates Tracking 329679 as yet unmatched pairs. 4788 records in RAM.
INFO 2026-06-08 08:23:50 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr3:139,357,841
INFO 2026-06-08 08:23:50 MarkDuplicates Tracking 329762 as yet unmatched pairs. 4863 records in RAM.
INFO 2026-06-08 08:23:52 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr3:149,960,807
INFO 2026-06-08 08:23:52 MarkDuplicates Tracking 328429 as yet unmatched pairs. 3519 records in RAM.
INFO 2026-06-08 08:23:54 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 2s. Last read position: chr3:160,531,529
INFO 2026-06-08 08:23:54 MarkDuplicates Tracking 328178 as yet unmatched pairs. 3260 records in RAM.
INFO 2026-06-08 08:23:56 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr3:179,576,865
INFO 2026-06-08 08:23:56 MarkDuplicates Tracking 327793 as yet unmatched pairs. 2862 records in RAM.
INFO 2026-06-08 08:23:58 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 2s. Last read position: chr3:184,315,769
INFO 2026-06-08 08:23:58 MarkDuplicates Tracking 327673 as yet unmatched pairs. 2737 records in RAM.
INFO 2026-06-08 08:24:00 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr3:187,729,465
INFO 2026-06-08 08:24:00 MarkDuplicates Tracking 326063 as yet unmatched pairs. 1118 records in RAM.
INFO 2026-06-08 08:24:02 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr3:196,071,458
INFO 2026-06-08 08:24:02 MarkDuplicates Tracking 325697 as yet unmatched pairs. 734 records in RAM.
INFO 2026-06-08 08:24:04 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 2s. Last read position: chr4:948,146
INFO 2026-06-08 08:24:04 MarkDuplicates Tracking 324962 as yet unmatched pairs. 11385 records in RAM.
INFO 2026-06-08 08:24:06 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 2s. Last read position: chr4:1,940,149
INFO 2026-06-08 08:24:06 MarkDuplicates Tracking 323957 as yet unmatched pairs. 10373 records in RAM.
INFO 2026-06-08 08:24:09 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 2s. Last read position: chr4:3,518,168
INFO 2026-06-08 08:24:09 MarkDuplicates Tracking 323527 as yet unmatched pairs. 9922 records in RAM.
INFO 2026-06-08 08:24:12 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 2s. Last read position: chr4:10,074,921
INFO 2026-06-08 08:24:12 MarkDuplicates Tracking 322528 as yet unmatched pairs. 8913 records in RAM.
INFO 2026-06-08 08:24:14 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr4:23,469,740
INFO 2026-06-08 08:24:14 MarkDuplicates Tracking 321936 as yet unmatched pairs. 8301 records in RAM.
INFO 2026-06-08 08:24:16 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr4:38,001,038
INFO 2026-06-08 08:24:16 MarkDuplicates Tracking 321498 as yet unmatched pairs. 7855 records in RAM.
INFO 2026-06-08 08:24:17 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr4:40,586,926
INFO 2026-06-08 08:24:17 MarkDuplicates Tracking 320778 as yet unmatched pairs. 7119 records in RAM.
INFO 2026-06-08 08:24:19 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 2s. Last read position: chr4:53,391,098
INFO 2026-06-08 08:24:19 MarkDuplicates Tracking 320424 as yet unmatched pairs. 6740 records in RAM.
INFO 2026-06-08 08:24:21 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 2s. Last read position: chr4:57,023,329
INFO 2026-06-08 08:24:21 MarkDuplicates Tracking 319808 as yet unmatched pairs. 6111 records in RAM.
INFO 2026-06-08 08:24:23 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr4:75,752,545
INFO 2026-06-08 08:24:23 MarkDuplicates Tracking 319460 as yet unmatched pairs. 5745 records in RAM.
INFO 2026-06-08 08:24:25 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr4:82,821,097
INFO 2026-06-08 08:24:25 MarkDuplicates Tracking 318710 as yet unmatched pairs. 4980 records in RAM.
INFO 2026-06-08 08:24:27 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr4:88,781,124
INFO 2026-06-08 08:24:27 MarkDuplicates Tracking 317930 as yet unmatched pairs. 4182 records in RAM.
INFO 2026-06-08 08:24:29 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 2s. Last read position: chr4:102,797,325
INFO 2026-06-08 08:24:29 MarkDuplicates Tracking 319684 as yet unmatched pairs. 5915 records in RAM.
INFO 2026-06-08 08:24:31 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 2s. Last read position: chr4:109,538,511
INFO 2026-06-08 08:24:31 MarkDuplicates Tracking 317020 as yet unmatched pairs. 3244 records in RAM.
INFO 2026-06-08 08:24:34 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 2s. Last read position: chr4:122,347,567
INFO 2026-06-08 08:24:34 MarkDuplicates Tracking 316375 as yet unmatched pairs. 2562 records in RAM.
INFO 2026-06-08 08:24:36 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 2s. Last read position: chr4:141,231,469
INFO 2026-06-08 08:24:36 MarkDuplicates Tracking 315756 as yet unmatched pairs. 1926 records in RAM.
INFO 2026-06-08 08:24:38 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr4:151,104,230
INFO 2026-06-08 08:24:38 MarkDuplicates Tracking 317440 as yet unmatched pairs. 3598 records in RAM.
INFO 2026-06-08 08:24:40 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr4:168,416,729
INFO 2026-06-08 08:24:40 MarkDuplicates Tracking 314694 as yet unmatched pairs. 824 records in RAM.
INFO 2026-06-08 08:24:42 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr4:186,619,357
INFO 2026-06-08 08:24:42 MarkDuplicates Tracking 314094 as yet unmatched pairs. 210 records in RAM.
INFO 2026-06-08 08:24:44 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 2s. Last read position: chr5:1,489,761
INFO 2026-06-08 08:24:44 MarkDuplicates Tracking 313620 as yet unmatched pairs. 18444 records in RAM.
INFO 2026-06-08 08:24:46 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 2s. Last read position: chr5:10,261,604
INFO 2026-06-08 08:24:46 MarkDuplicates Tracking 313054 as yet unmatched pairs. 17856 records in RAM.
INFO 2026-06-08 08:24:48 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 2s. Last read position: chr5:14,419,887
INFO 2026-06-08 08:24:48 MarkDuplicates Tracking 313027 as yet unmatched pairs. 17816 records in RAM.
INFO 2026-06-08 08:24:51 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 2s. Last read position: chr5:32,073,953
INFO 2026-06-08 08:24:51 MarkDuplicates Tracking 311507 as yet unmatched pairs. 16283 records in RAM.
INFO 2026-06-08 08:24:53 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 2s. Last read position: chr5:36,200,228
INFO 2026-06-08 08:24:53 MarkDuplicates Tracking 311175 as yet unmatched pairs. 15931 records in RAM.
INFO 2026-06-08 08:24:55 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 2s. Last read position: chr5:42,565,892
INFO 2026-06-08 08:24:55 MarkDuplicates Tracking 310375 as yet unmatched pairs. 15090 records in RAM.
INFO 2026-06-08 08:24:57 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 2s. Last read position: chr5:55,498,444
INFO 2026-06-08 08:24:57 MarkDuplicates Tracking 309845 as yet unmatched pairs. 14515 records in RAM.
INFO 2026-06-08 08:24:59 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr5:66,053,736
INFO 2026-06-08 08:24:59 MarkDuplicates Tracking 309731 as yet unmatched pairs. 14388 records in RAM.
INFO 2026-06-08 08:25:01 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr5:69,636,306
INFO 2026-06-08 08:25:01 MarkDuplicates Tracking 308641 as yet unmatched pairs. 13291 records in RAM.
INFO 2026-06-08 08:25:03 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr5:72,281,944
INFO 2026-06-08 08:25:03 MarkDuplicates Tracking 309499 as yet unmatched pairs. 14142 records in RAM.
INFO 2026-06-08 08:25:05 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr5:79,083,742
INFO 2026-06-08 08:25:05 MarkDuplicates Tracking 307932 as yet unmatched pairs. 12555 records in RAM.
INFO 2026-06-08 08:25:06 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr5:84,066,511
INFO 2026-06-08 08:25:06 MarkDuplicates Tracking 307407 as yet unmatched pairs. 12011 records in RAM.
INFO 2026-06-08 08:25:08 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr5:96,767,936
INFO 2026-06-08 08:25:08 MarkDuplicates Tracking 307551 as yet unmatched pairs. 12149 records in RAM.
INFO 2026-06-08 08:25:10 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr5:115,524,904
INFO 2026-06-08 08:25:10 MarkDuplicates Tracking 306343 as yet unmatched pairs. 10923 records in RAM.
INFO 2026-06-08 08:25:12 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 2s. Last read position: chr5:132,192,449
INFO 2026-06-08 08:25:12 MarkDuplicates Tracking 305606 as yet unmatched pairs. 10182 records in RAM.
INFO 2026-06-08 08:25:14 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr5:135,353,010
INFO 2026-06-08 08:25:14 MarkDuplicates Tracking 305393 as yet unmatched pairs. 9960 records in RAM.
INFO 2026-06-08 08:25:17 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 2s. Last read position: chr5:138,951,297
INFO 2026-06-08 08:25:17 MarkDuplicates Tracking 304337 as yet unmatched pairs. 8897 records in RAM.
INFO 2026-06-08 08:25:19 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 2s. Last read position: chr5:141,102,500
INFO 2026-06-08 08:25:19 MarkDuplicates Tracking 303711 as yet unmatched pairs. 8169 records in RAM.
INFO 2026-06-08 08:25:21 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr5:146,066,342
INFO 2026-06-08 08:25:21 MarkDuplicates Tracking 303113 as yet unmatched pairs. 7551 records in RAM.
INFO 2026-06-08 08:25:23 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr5:150,251,988
INFO 2026-06-08 08:25:23 MarkDuplicates Tracking 302513 as yet unmatched pairs. 6945 records in RAM.
INFO 2026-06-08 08:25:25 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr5:150,405,171
INFO 2026-06-08 08:25:25 MarkDuplicates Tracking 311434 as yet unmatched pairs. 15846 records in RAM.
INFO 2026-06-08 08:25:27 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr5:151,253,250
INFO 2026-06-08 08:25:27 MarkDuplicates Tracking 303423 as yet unmatched pairs. 7818 records in RAM.
INFO 2026-06-08 08:25:29 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 2s. Last read position: chr5:154,863,308
INFO 2026-06-08 08:25:29 MarkDuplicates Tracking 300959 as yet unmatched pairs. 5343 records in RAM.
INFO 2026-06-08 08:25:30 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr5:168,568,842
INFO 2026-06-08 08:25:30 MarkDuplicates Tracking 300314 as yet unmatched pairs. 4695 records in RAM.
INFO 2026-06-08 08:25:33 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 2s. Last read position: chr5:171,400,196
INFO 2026-06-08 08:25:33 MarkDuplicates Tracking 305835 as yet unmatched pairs. 10211 records in RAM.
INFO 2026-06-08 08:25:35 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 2s. Last read position: chr5:176,397,942
INFO 2026-06-08 08:25:35 MarkDuplicates Tracking 299072 as yet unmatched pairs. 3436 records in RAM.
INFO 2026-06-08 08:25:37 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr5:177,488,068
INFO 2026-06-08 08:25:37 MarkDuplicates Tracking 298731 as yet unmatched pairs. 3068 records in RAM.
INFO 2026-06-08 08:25:39 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr5:179,708,300
INFO 2026-06-08 08:25:39 MarkDuplicates Tracking 299933 as yet unmatched pairs. 4260 records in RAM.
INFO 2026-06-08 08:25:41 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 2s. Last read position: chr5:179,824,231
INFO 2026-06-08 08:25:41 MarkDuplicates Tracking 303466 as yet unmatched pairs. 7791 records in RAM.
INFO 2026-06-08 08:25:44 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 2s. Last read position: chr5:180,791,843
INFO 2026-06-08 08:25:44 MarkDuplicates Tracking 296641 as yet unmatched pairs. 954 records in RAM.
INFO 2026-06-08 08:25:46 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 2s. Last read position: chr6:3,153,900
INFO 2026-06-08 08:25:46 MarkDuplicates Tracking 295630 as yet unmatched pairs. 18674 records in RAM.
INFO 2026-06-08 08:25:48 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 2s. Last read position: chr6:7,567,849
INFO 2026-06-08 08:25:48 MarkDuplicates Tracking 295709 as yet unmatched pairs. 18746 records in RAM.
INFO 2026-06-08 08:25:50 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 2s. Last read position: chr6:11,766,243
INFO 2026-06-08 08:25:50 MarkDuplicates Tracking 294612 as yet unmatched pairs. 17645 records in RAM.
INFO 2026-06-08 08:25:53 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 2s. Last read position: chr6:24,658,558
INFO 2026-06-08 08:25:53 MarkDuplicates Tracking 293861 as yet unmatched pairs. 16857 records in RAM.
INFO 2026-06-08 08:25:56 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 2s. Last read position: chr6:27,146,663
INFO 2026-06-08 08:25:56 MarkDuplicates Tracking 293934 as yet unmatched pairs. 16918 records in RAM.
INFO 2026-06-08 08:25:59 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 2s. Last read position: chr6:30,712,321
INFO 2026-06-08 08:25:59 MarkDuplicates Tracking 292493 as yet unmatched pairs. 15465 records in RAM.
INFO 2026-06-08 08:26:02 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 3s. Last read position: chr6:31,631,366
INFO 2026-06-08 08:26:02 MarkDuplicates Tracking 292004 as yet unmatched pairs. 14960 records in RAM.
INFO 2026-06-08 08:26:05 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 3s. Last read position: chr6:31,816,895
INFO 2026-06-08 08:26:05 MarkDuplicates Tracking 291205 as yet unmatched pairs. 14160 records in RAM.
INFO 2026-06-08 08:26:09 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 3s. Last read position: chr6:32,186,372
INFO 2026-06-08 08:26:09 MarkDuplicates Tracking 290648 as yet unmatched pairs. 13600 records in RAM.
INFO 2026-06-08 08:26:11 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 2s. Last read position: chr6:33,208,886
INFO 2026-06-08 08:26:11 MarkDuplicates Tracking 289943 as yet unmatched pairs. 12883 records in RAM.
INFO 2026-06-08 08:26:13 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:07:29s. Time for last 1,000,000: 1s. Last read position: chr6:34,281,307
INFO 2026-06-08 08:26:13 MarkDuplicates Tracking 289092 as yet unmatched pairs. 12027 records in RAM.
INFO 2026-06-08 08:26:15 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:07:31s. Time for last 1,000,000: 2s. Last read position: chr6:36,970,435
INFO 2026-06-08 08:26:15 MarkDuplicates Tracking 289449 as yet unmatched pairs. 12372 records in RAM.
INFO 2026-06-08 08:26:17 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 2s. Last read position: chr6:43,076,406
INFO 2026-06-08 08:26:17 MarkDuplicates Tracking 287857 as yet unmatched pairs. 10775 records in RAM.
INFO 2026-06-08 08:26:19 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 2s. Last read position: chr6:47,606,139
INFO 2026-06-08 08:26:19 MarkDuplicates Tracking 287246 as yet unmatched pairs. 10159 records in RAM.
INFO 2026-06-08 08:26:21 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:07:37s. Time for last 1,000,000: 2s. Last read position: chr6:52,995,808
INFO 2026-06-08 08:26:21 MarkDuplicates Tracking 286739 as yet unmatched pairs. 9608 records in RAM.
INFO 2026-06-08 08:26:24 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:07:40s. Time for last 1,000,000: 2s. Last read position: chr6:63,685,542
INFO 2026-06-08 08:26:24 MarkDuplicates Tracking 286364 as yet unmatched pairs. 9210 records in RAM.
INFO 2026-06-08 08:26:26 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 2s. Last read position: chr6:75,132,012
INFO 2026-06-08 08:26:26 MarkDuplicates Tracking 285964 as yet unmatched pairs. 8805 records in RAM.
INFO 2026-06-08 08:26:28 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 1s. Last read position: chr6:82,211,498
INFO 2026-06-08 08:26:28 MarkDuplicates Tracking 285267 as yet unmatched pairs. 8102 records in RAM.
INFO 2026-06-08 08:26:31 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:07:47s. Time for last 1,000,000: 2s. Last read position: chr6:89,338,522
INFO 2026-06-08 08:26:31 MarkDuplicates Tracking 284554 as yet unmatched pairs. 7363 records in RAM.
INFO 2026-06-08 08:26:33 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 2s. Last read position: chr6:106,622,850
INFO 2026-06-08 08:26:33 MarkDuplicates Tracking 283867 as yet unmatched pairs. 6668 records in RAM.
INFO 2026-06-08 08:26:36 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 2s. Last read position: chr6:113,860,412
INFO 2026-06-08 08:26:36 MarkDuplicates Tracking 283313 as yet unmatched pairs. 6096 records in RAM.
INFO 2026-06-08 08:26:38 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 2s. Last read position: chr6:117,907,178
INFO 2026-06-08 08:26:38 MarkDuplicates Tracking 282798 as yet unmatched pairs. 5561 records in RAM.
INFO 2026-06-08 08:26:41 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 2s. Last read position: chr6:131,950,113
INFO 2026-06-08 08:26:41 MarkDuplicates Tracking 282637 as yet unmatched pairs. 5377 records in RAM.
INFO 2026-06-08 08:26:43 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:07:59s. Time for last 1,000,000: 2s. Last read position: chr6:136,601,823
INFO 2026-06-08 08:26:43 MarkDuplicates Tracking 281785 as yet unmatched pairs. 4500 records in RAM.
INFO 2026-06-08 08:26:45 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 2s. Last read position: chr6:142,769,605
INFO 2026-06-08 08:26:45 MarkDuplicates Tracking 280831 as yet unmatched pairs. 3531 records in RAM.
INFO 2026-06-08 08:26:47 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 2s. Last read position: chr6:149,919,553
INFO 2026-06-08 08:26:47 MarkDuplicates Tracking 280159 as yet unmatched pairs. 2836 records in RAM.
INFO 2026-06-08 08:26:49 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 2s. Last read position: chr6:158,766,948
INFO 2026-06-08 08:26:49 MarkDuplicates Tracking 279727 as yet unmatched pairs. 2385 records in RAM.
INFO 2026-06-08 08:26:51 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 2s. Last read position: chr6:159,775,236
INFO 2026-06-08 08:26:51 MarkDuplicates Tracking 279019 as yet unmatched pairs. 1666 records in RAM.
INFO 2026-06-08 08:26:53 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 2s. Last read position: chr6:165,933,109
INFO 2026-06-08 08:26:53 MarkDuplicates Tracking 278214 as yet unmatched pairs. 850 records in RAM.
INFO 2026-06-08 08:26:56 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 2s. Last read position: chr6:170,317,481
INFO 2026-06-08 08:26:56 MarkDuplicates Tracking 277977 as yet unmatched pairs. 606 records in RAM.
INFO 2026-06-08 08:26:59 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 3s. Last read position: chr7:2,559,197
INFO 2026-06-08 08:26:59 MarkDuplicates Tracking 276718 as yet unmatched pairs. 20769 records in RAM.
INFO 2026-06-08 08:27:02 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 3s. Last read position: chr7:5,528,330
INFO 2026-06-08 08:27:02 MarkDuplicates Tracking 279635 as yet unmatched pairs. 23670 records in RAM.
INFO 2026-06-08 08:27:05 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 2s. Last read position: chr7:6,469,733
INFO 2026-06-08 08:27:05 MarkDuplicates Tracking 275773 as yet unmatched pairs. 19802 records in RAM.
INFO 2026-06-08 08:27:07 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 2s. Last read position: chr7:22,813,143
INFO 2026-06-08 08:27:07 MarkDuplicates Tracking 276244 as yet unmatched pairs. 20249 records in RAM.
INFO 2026-06-08 08:27:09 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 2s. Last read position: chr7:32,495,689
INFO 2026-06-08 08:27:09 MarkDuplicates Tracking 274097 as yet unmatched pairs. 18095 records in RAM.
INFO 2026-06-08 08:27:12 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 2s. Last read position: chr7:44,040,265
INFO 2026-06-08 08:27:12 MarkDuplicates Tracking 273429 as yet unmatched pairs. 17409 records in RAM.
INFO 2026-06-08 08:27:15 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 3s. Last read position: chr7:47,885,962
INFO 2026-06-08 08:27:15 MarkDuplicates Tracking 272727 as yet unmatched pairs. 16707 records in RAM.
INFO 2026-06-08 08:27:17 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 2s. Last read position: chr7:55,151,294
INFO 2026-06-08 08:27:17 MarkDuplicates Tracking 279674 as yet unmatched pairs. 23646 records in RAM.
INFO 2026-06-08 08:27:20 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 2s. Last read position: chr7:55,161,608
INFO 2026-06-08 08:27:20 MarkDuplicates Tracking 281666 as yet unmatched pairs. 25634 records in RAM.
INFO 2026-06-08 08:27:22 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 2s. Last read position: chr7:55,200,320
INFO 2026-06-08 08:27:22 MarkDuplicates Tracking 274141 as yet unmatched pairs. 18090 records in RAM.
INFO 2026-06-08 08:27:25 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 2s. Last read position: chr7:56,060,335
INFO 2026-06-08 08:27:25 MarkDuplicates Tracking 271149 as yet unmatched pairs. 15094 records in RAM.
INFO 2026-06-08 08:27:28 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 2s. Last read position: chr7:64,991,707
INFO 2026-06-08 08:27:28 MarkDuplicates Tracking 269690 as yet unmatched pairs. 13629 records in RAM.
INFO 2026-06-08 08:27:30 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 2s. Last read position: chr7:73,183,252
INFO 2026-06-08 08:27:30 MarkDuplicates Tracking 269029 as yet unmatched pairs. 12953 records in RAM.
INFO 2026-06-08 08:27:32 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr7:74,748,013
INFO 2026-06-08 08:27:32 MarkDuplicates Tracking 268398 as yet unmatched pairs. 12312 records in RAM.
INFO 2026-06-08 08:28:46 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 74s. Last read position: chr7:76,048,064
INFO 2026-06-08 08:28:46 MarkDuplicates Tracking 268096 as yet unmatched pairs. 12010 records in RAM.
INFO 2026-06-08 08:28:49 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 2s. Last read position: chr7:76,329,546
INFO 2026-06-08 08:28:49 MarkDuplicates Tracking 267498 as yet unmatched pairs. 11393 records in RAM.
INFO 2026-06-08 08:28:51 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 2s. Last read position: chr7:87,377,367
INFO 2026-06-08 08:28:51 MarkDuplicates Tracking 266822 as yet unmatched pairs. 10702 records in RAM.
INFO 2026-06-08 08:28:53 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 2s. Last read position: chr7:92,099,632
INFO 2026-06-08 08:28:53 MarkDuplicates Tracking 266518 as yet unmatched pairs. 10385 records in RAM.
INFO 2026-06-08 08:28:56 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 2s. Last read position: chr7:94,425,634
INFO 2026-06-08 08:28:56 MarkDuplicates Tracking 266463 as yet unmatched pairs. 10322 records in RAM.
INFO 2026-06-08 08:28:58 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 2s. Last read position: chr7:98,990,498
INFO 2026-06-08 08:28:58 MarkDuplicates Tracking 265082 as yet unmatched pairs. 8933 records in RAM.
INFO 2026-06-08 08:29:00 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 2s. Last read position: chr7:100,153,414
INFO 2026-06-08 08:29:00 MarkDuplicates Tracking 266030 as yet unmatched pairs. 9876 records in RAM.
INFO 2026-06-08 08:29:03 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 2s. Last read position: chr7:100,886,421
INFO 2026-06-08 08:29:03 MarkDuplicates Tracking 263423 as yet unmatched pairs. 7266 records in RAM.
INFO 2026-06-08 08:29:05 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr7:102,560,718
INFO 2026-06-08 08:29:05 MarkDuplicates Tracking 263333 as yet unmatched pairs. 7164 records in RAM.
INFO 2026-06-08 08:29:07 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr7:106,250,989
INFO 2026-06-08 08:29:07 MarkDuplicates Tracking 262942 as yet unmatched pairs. 6765 records in RAM.
INFO 2026-06-08 08:29:09 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 2s. Last read position: chr7:111,977,232
INFO 2026-06-08 08:29:09 MarkDuplicates Tracking 261834 as yet unmatched pairs. 5648 records in RAM.
INFO 2026-06-08 08:29:11 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 2s. Last read position: chr7:127,694,856
INFO 2026-06-08 08:29:11 MarkDuplicates Tracking 266320 as yet unmatched pairs. 10115 records in RAM.
INFO 2026-06-08 08:29:13 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 2s. Last read position: chr7:128,488,143
INFO 2026-06-08 08:29:13 MarkDuplicates Tracking 260634 as yet unmatched pairs. 4410 records in RAM.
INFO 2026-06-08 08:29:16 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 2s. Last read position: chr7:134,158,060
INFO 2026-06-08 08:29:16 MarkDuplicates Tracking 259953 as yet unmatched pairs. 3699 records in RAM.
INFO 2026-06-08 08:29:18 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr7:138,919,218
INFO 2026-06-08 08:29:18 MarkDuplicates Tracking 259522 as yet unmatched pairs. 3258 records in RAM.
INFO 2026-06-08 08:29:20 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 2s. Last read position: chr7:142,801,312
INFO 2026-06-08 08:29:20 MarkDuplicates Tracking 258940 as yet unmatched pairs. 2661 records in RAM.
INFO 2026-06-08 08:29:22 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr7:148,827,253
INFO 2026-06-08 08:29:22 MarkDuplicates Tracking 258262 as yet unmatched pairs. 1974 records in RAM.
INFO 2026-06-08 08:29:24 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 2s. Last read position: chr7:151,076,310
INFO 2026-06-08 08:29:24 MarkDuplicates Tracking 257742 as yet unmatched pairs. 1448 records in RAM.
INFO 2026-06-08 08:29:26 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 2s. Last read position: chr7:152,800,628
INFO 2026-06-08 08:29:26 MarkDuplicates Tracking 256837 as yet unmatched pairs. 534 records in RAM.
INFO 2026-06-08 08:29:28 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 2s. Last read position: chr8:8,891,186
INFO 2026-06-08 08:29:28 MarkDuplicates Tracking 256208 as yet unmatched pairs. 17394 records in RAM.
INFO 2026-06-08 08:29:30 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 2s. Last read position: chr8:15,748,396
INFO 2026-06-08 08:29:30 MarkDuplicates Tracking 257753 as yet unmatched pairs. 18924 records in RAM.
INFO 2026-06-08 08:29:32 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 2s. Last read position: chr8:22,571,120
INFO 2026-06-08 08:29:32 MarkDuplicates Tracking 255001 as yet unmatched pairs. 16169 records in RAM.
INFO 2026-06-08 08:29:34 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 2s. Last read position: chr8:28,627,046
INFO 2026-06-08 08:29:34 MarkDuplicates Tracking 254270 as yet unmatched pairs. 15435 records in RAM.
INFO 2026-06-08 08:29:36 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 2s. Last read position: chr8:38,424,563
INFO 2026-06-08 08:29:36 MarkDuplicates Tracking 253872 as yet unmatched pairs. 15032 records in RAM.
INFO 2026-06-08 08:29:39 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 2s. Last read position: chr8:47,774,105
INFO 2026-06-08 08:29:39 MarkDuplicates Tracking 254412 as yet unmatched pairs. 15569 records in RAM.
INFO 2026-06-08 08:29:40 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr8:47,961,426
INFO 2026-06-08 08:29:40 MarkDuplicates Tracking 253142 as yet unmatched pairs. 14296 records in RAM.
INFO 2026-06-08 08:29:43 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 2s. Last read position: chr8:61,525,944
INFO 2026-06-08 08:29:43 MarkDuplicates Tracking 251900 as yet unmatched pairs. 13045 records in RAM.
INFO 2026-06-08 08:29:45 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 2s. Last read position: chr8:73,291,893
INFO 2026-06-08 08:29:45 MarkDuplicates Tracking 251634 as yet unmatched pairs. 12767 records in RAM.
INFO 2026-06-08 08:29:47 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 2s. Last read position: chr8:81,702,990
INFO 2026-06-08 08:29:47 MarkDuplicates Tracking 251416 as yet unmatched pairs. 12542 records in RAM.
INFO 2026-06-08 08:29:50 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 2s. Last read position: chr8:90,042,758
INFO 2026-06-08 08:29:50 MarkDuplicates Tracking 250739 as yet unmatched pairs. 11843 records in RAM.
INFO 2026-06-08 08:29:52 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 2s. Last read position: chr8:96,069,665
INFO 2026-06-08 08:29:52 MarkDuplicates Tracking 249536 as yet unmatched pairs. 10624 records in RAM.
INFO 2026-06-08 08:29:54 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 2s. Last read position: chr8:98,045,035
INFO 2026-06-08 08:29:54 MarkDuplicates Tracking 249074 as yet unmatched pairs. 10156 records in RAM.
INFO 2026-06-08 08:29:56 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 2s. Last read position: chr8:100,704,317
INFO 2026-06-08 08:29:56 MarkDuplicates Tracking 258893 as yet unmatched pairs. 19962 records in RAM.
INFO 2026-06-08 08:29:58 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 2s. Last read position: chr8:100,717,859
INFO 2026-06-08 08:29:58 MarkDuplicates Tracking 256479 as yet unmatched pairs. 17540 records in RAM.
INFO 2026-06-08 08:30:00 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 2s. Last read position: chr8:102,304,027
INFO 2026-06-08 08:30:00 MarkDuplicates Tracking 247400 as yet unmatched pairs. 8456 records in RAM.
INFO 2026-06-08 08:30:03 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 2s. Last read position: chr8:106,713,847
INFO 2026-06-08 08:30:03 MarkDuplicates Tracking 246696 as yet unmatched pairs. 7740 records in RAM.
INFO 2026-06-08 08:30:05 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 2s. Last read position: chr8:115,587,260
INFO 2026-06-08 08:30:05 MarkDuplicates Tracking 246363 as yet unmatched pairs. 7390 records in RAM.
INFO 2026-06-08 08:30:07 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 2s. Last read position: chr8:119,732,076
INFO 2026-06-08 08:30:07 MarkDuplicates Tracking 245700 as yet unmatched pairs. 6704 records in RAM.
INFO 2026-06-08 08:30:09 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 2s. Last read position: chr8:124,585,105
INFO 2026-06-08 08:30:09 MarkDuplicates Tracking 245040 as yet unmatched pairs. 6010 records in RAM.
INFO 2026-06-08 08:30:12 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 2s. Last read position: chr8:129,720,878
INFO 2026-06-08 08:30:12 MarkDuplicates Tracking 244232 as yet unmatched pairs. 5198 records in RAM.
INFO 2026-06-08 08:30:14 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 2s. Last read position: chr8:140,890,594
INFO 2026-06-08 08:30:14 MarkDuplicates Tracking 244054 as yet unmatched pairs. 5003 records in RAM.
INFO 2026-06-08 08:30:16 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 2s. Last read position: chr8:143,730,357
INFO 2026-06-08 08:30:16 MarkDuplicates Tracking 243515 as yet unmatched pairs. 4452 records in RAM.
INFO 2026-06-08 08:30:17 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,124
INFO 2026-06-08 08:30:17 MarkDuplicates Tracking 246200 as yet unmatched pairs. 7135 records in RAM.
INFO 2026-06-08 08:30:19 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,077
INFO 2026-06-08 08:30:19 MarkDuplicates Tracking 242141 as yet unmatched pairs. 3076 records in RAM.
INFO 2026-06-08 08:30:20 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,789
INFO 2026-06-08 08:30:20 MarkDuplicates Tracking 242231 as yet unmatched pairs. 3166 records in RAM.
INFO 2026-06-08 08:30:22 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,675
INFO 2026-06-08 08:30:22 MarkDuplicates Tracking 242221 as yet unmatched pairs. 3156 records in RAM.
INFO 2026-06-08 08:30:23 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr8:143,866,353
INFO 2026-06-08 08:30:23 MarkDuplicates Tracking 241117 as yet unmatched pairs. 2052 records in RAM.
INFO 2026-06-08 08:30:25 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr8:143,933,264
INFO 2026-06-08 08:30:25 MarkDuplicates Tracking 240343 as yet unmatched pairs. 1276 records in RAM.
INFO 2026-06-08 08:30:27 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 2s. Last read position: chr8:144,473,373
INFO 2026-06-08 08:30:27 MarkDuplicates Tracking 239672 as yet unmatched pairs. 600 records in RAM.
INFO 2026-06-08 08:30:29 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 2s. Last read position: chr9:9,091,219
INFO 2026-06-08 08:30:29 MarkDuplicates Tracking 238718 as yet unmatched pairs. 16372 records in RAM.
INFO 2026-06-08 08:30:32 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 2s. Last read position: chr9:14,146,727
INFO 2026-06-08 08:30:32 MarkDuplicates Tracking 241163 as yet unmatched pairs. 18808 records in RAM.
INFO 2026-06-08 08:30:34 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 2s. Last read position: chr9:19,077,201
INFO 2026-06-08 08:30:34 MarkDuplicates Tracking 237959 as yet unmatched pairs. 15596 records in RAM.
INFO 2026-06-08 08:30:36 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 2s. Last read position: chr9:19,379,512
INFO 2026-06-08 08:30:36 MarkDuplicates Tracking 237119 as yet unmatched pairs. 14748 records in RAM.
INFO 2026-06-08 08:30:38 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 2s. Last read position: chr9:22,005,825
INFO 2026-06-08 08:30:38 MarkDuplicates Tracking 236203 as yet unmatched pairs. 13812 records in RAM.
INFO 2026-06-08 08:30:40 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 2s. Last read position: chr9:33,113,797
INFO 2026-06-08 08:30:40 MarkDuplicates Tracking 235817 as yet unmatched pairs. 13417 records in RAM.
INFO 2026-06-08 08:30:43 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 2s. Last read position: chr9:33,442,379
INFO 2026-06-08 08:30:43 MarkDuplicates Tracking 241422 as yet unmatched pairs. 19004 records in RAM.
INFO 2026-06-08 08:30:45 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 2s. Last read position: chr9:34,242,000
INFO 2026-06-08 08:30:45 MarkDuplicates Tracking 234452 as yet unmatched pairs. 12017 records in RAM.
INFO 2026-06-08 08:30:47 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 2s. Last read position: chr9:35,089,128
INFO 2026-06-08 08:30:47 MarkDuplicates Tracking 233677 as yet unmatched pairs. 11240 records in RAM.
INFO 2026-06-08 08:30:49 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 2s. Last read position: chr9:35,706,252
INFO 2026-06-08 08:30:49 MarkDuplicates Tracking 232912 as yet unmatched pairs. 10469 records in RAM.
INFO 2026-06-08 08:30:51 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr9:63,431,419
INFO 2026-06-08 08:30:51 MarkDuplicates Tracking 232132 as yet unmatched pairs. 9657 records in RAM.
INFO 2026-06-08 08:30:53 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 2s. Last read position: chr9:81,590,948
INFO 2026-06-08 08:30:53 MarkDuplicates Tracking 231746 as yet unmatched pairs. 9269 records in RAM.
INFO 2026-06-08 08:30:56 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 2s. Last read position: chr9:91,733,400
INFO 2026-06-08 08:30:56 MarkDuplicates Tracking 231130 as yet unmatched pairs. 8644 records in RAM.
INFO 2026-06-08 08:30:58 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 2s. Last read position: chr9:96,336,770
INFO 2026-06-08 08:30:58 MarkDuplicates Tracking 230522 as yet unmatched pairs. 8020 records in RAM.
INFO 2026-06-08 08:31:00 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 2s. Last read position: chr9:104,818,807
INFO 2026-06-08 08:31:00 MarkDuplicates Tracking 229865 as yet unmatched pairs. 7348 records in RAM.
INFO 2026-06-08 08:31:03 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 2s. Last read position: chr9:111,451,018
INFO 2026-06-08 08:31:03 MarkDuplicates Tracking 229432 as yet unmatched pairs. 6895 records in RAM.
INFO 2026-06-08 08:31:05 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 2s. Last read position: chr9:115,090,762
INFO 2026-06-08 08:31:05 MarkDuplicates Tracking 228773 as yet unmatched pairs. 6224 records in RAM.
INFO 2026-06-08 08:31:08 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 2s. Last read position: chr9:122,919,459
INFO 2026-06-08 08:31:08 MarkDuplicates Tracking 227943 as yet unmatched pairs. 5387 records in RAM.
INFO 2026-06-08 08:31:11 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 2s. Last read position: chr9:127,447,912
INFO 2026-06-08 08:31:11 MarkDuplicates Tracking 228762 as yet unmatched pairs. 6199 records in RAM.
INFO 2026-06-08 08:31:13 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 2s. Last read position: chr9:128,343,270
INFO 2026-06-08 08:31:13 MarkDuplicates Tracking 226718 as yet unmatched pairs. 4146 records in RAM.
INFO 2026-06-08 08:31:16 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 2s. Last read position: chr9:129,177,930
INFO 2026-06-08 08:31:16 MarkDuplicates Tracking 225808 as yet unmatched pairs. 3230 records in RAM.
INFO 2026-06-08 08:31:18 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 2s. Last read position: chr9:132,650,262
INFO 2026-06-08 08:31:18 MarkDuplicates Tracking 225382 as yet unmatched pairs. 2782 records in RAM.
INFO 2026-06-08 08:31:21 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 2s. Last read position: chr9:134,439,836
INFO 2026-06-08 08:31:21 MarkDuplicates Tracking 224574 as yet unmatched pairs. 1954 records in RAM.
INFO 2026-06-08 08:31:23 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 2s. Last read position: chr9:136,496,978
INFO 2026-06-08 08:31:23 MarkDuplicates Tracking 223860 as yet unmatched pairs. 1230 records in RAM.
INFO 2026-06-08 08:31:25 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 2s. Last read position: chr9:137,242,859
INFO 2026-06-08 08:31:25 MarkDuplicates Tracking 224401 as yet unmatched pairs. 1770 records in RAM.
INFO 2026-06-08 08:31:27 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 2s. Last read position: chr10:3,159,033
INFO 2026-06-08 08:31:27 MarkDuplicates Tracking 222852 as yet unmatched pairs. 12169 records in RAM.
INFO 2026-06-08 08:31:29 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 2s. Last read position: chr10:5,906,423
INFO 2026-06-08 08:31:29 MarkDuplicates Tracking 222330 as yet unmatched pairs. 11635 records in RAM.
INFO 2026-06-08 08:31:31 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 2s. Last read position: chr10:14,851,241
INFO 2026-06-08 08:31:31 MarkDuplicates Tracking 221303 as yet unmatched pairs. 10602 records in RAM.
INFO 2026-06-08 08:31:33 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 2s. Last read position: chr10:24,513,291
INFO 2026-06-08 08:31:33 MarkDuplicates Tracking 220626 as yet unmatched pairs. 9905 records in RAM.
INFO 2026-06-08 08:31:36 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 2s. Last read position: chr10:30,026,787
INFO 2026-06-08 08:31:36 MarkDuplicates Tracking 220116 as yet unmatched pairs. 9389 records in RAM.
INFO 2026-06-08 08:31:39 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 2s. Last read position: chr10:32,055,914
INFO 2026-06-08 08:31:39 MarkDuplicates Tracking 219920 as yet unmatched pairs. 9193 records in RAM.
INFO 2026-06-08 08:31:42 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 3s. Last read position: chr10:35,044,636
INFO 2026-06-08 08:31:42 MarkDuplicates Tracking 219465 as yet unmatched pairs. 8721 records in RAM.
INFO 2026-06-08 08:31:44 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 2s. Last read position: chr10:46,014,448
INFO 2026-06-08 08:31:44 MarkDuplicates Tracking 219705 as yet unmatched pairs. 8953 records in RAM.
INFO 2026-06-08 08:31:46 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr10:58,388,188
INFO 2026-06-08 08:31:46 MarkDuplicates Tracking 217976 as yet unmatched pairs. 7214 records in RAM.
INFO 2026-06-08 08:31:48 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 2s. Last read position: chr10:69,015,899
INFO 2026-06-08 08:31:48 MarkDuplicates Tracking 217386 as yet unmatched pairs. 6624 records in RAM.
INFO 2026-06-08 08:31:50 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 2s. Last read position: chr10:73,542,759
INFO 2026-06-08 08:31:50 MarkDuplicates Tracking 216717 as yet unmatched pairs. 5948 records in RAM.
INFO 2026-06-08 08:31:52 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 2s. Last read position: chr10:78,035,593
INFO 2026-06-08 08:31:52 MarkDuplicates Tracking 218144 as yet unmatched pairs. 7371 records in RAM.
INFO 2026-06-08 08:31:54 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr10:87,024,572
INFO 2026-06-08 08:31:54 MarkDuplicates Tracking 215352 as yet unmatched pairs. 4573 records in RAM.
INFO 2026-06-08 08:31:56 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 2s. Last read position: chr10:92,928,323
INFO 2026-06-08 08:31:56 MarkDuplicates Tracking 214807 as yet unmatched pairs. 4013 records in RAM.
INFO 2026-06-08 08:31:59 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 2s. Last read position: chr10:97,619,486
INFO 2026-06-08 08:31:59 MarkDuplicates Tracking 214105 as yet unmatched pairs. 3302 records in RAM.
INFO 2026-06-08 08:32:01 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 2s. Last read position: chr10:102,111,434
INFO 2026-06-08 08:32:01 MarkDuplicates Tracking 213732 as yet unmatched pairs. 2923 records in RAM.
INFO 2026-06-08 08:32:04 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 2s. Last read position: chr10:104,275,192
INFO 2026-06-08 08:32:04 MarkDuplicates Tracking 212923 as yet unmatched pairs. 2087 records in RAM.
INFO 2026-06-08 08:32:06 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 2s. Last read position: chr10:119,071,058
INFO 2026-06-08 08:32:06 MarkDuplicates Tracking 212577 as yet unmatched pairs. 1721 records in RAM.
INFO 2026-06-08 08:32:09 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 2s. Last read position: chr10:124,623,237
INFO 2026-06-08 08:32:09 MarkDuplicates Tracking 211620 as yet unmatched pairs. 758 records in RAM.
INFO 2026-06-08 08:32:12 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 3s. Last read position: chr10:133,373,269
INFO 2026-06-08 08:32:12 MarkDuplicates Tracking 210921 as yet unmatched pairs. 49 records in RAM.
INFO 2026-06-08 08:32:15 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 3s. Last read position: chr11:747,565
INFO 2026-06-08 08:32:15 MarkDuplicates Tracking 210377 as yet unmatched pairs. 19727 records in RAM.
INFO 2026-06-08 08:32:18 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 2s. Last read position: chr11:2,402,724
INFO 2026-06-08 08:32:18 MarkDuplicates Tracking 209538 as yet unmatched pairs. 18887 records in RAM.
INFO 2026-06-08 08:32:20 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 2s. Last read position: chr11:6,622,153
INFO 2026-06-08 08:32:20 MarkDuplicates Tracking 208775 as yet unmatched pairs. 18113 records in RAM.
INFO 2026-06-08 08:32:23 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 2s. Last read position: chr11:10,772,541
INFO 2026-06-08 08:32:23 MarkDuplicates Tracking 208138 as yet unmatched pairs. 17462 records in RAM.
INFO 2026-06-08 08:32:26 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 2s. Last read position: chr11:17,075,112
INFO 2026-06-08 08:32:26 MarkDuplicates Tracking 211383 as yet unmatched pairs. 20707 records in RAM.
INFO 2026-06-08 08:32:29 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 2s. Last read position: chr11:31,603,766
INFO 2026-06-08 08:32:29 MarkDuplicates Tracking 206943 as yet unmatched pairs. 16261 records in RAM.
INFO 2026-06-08 08:32:31 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 2s. Last read position: chr11:35,214,842
INFO 2026-06-08 08:32:31 MarkDuplicates Tracking 206676 as yet unmatched pairs. 15982 records in RAM.
INFO 2026-06-08 08:32:33 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 2s. Last read position: chr11:46,681,298
INFO 2026-06-08 08:32:33 MarkDuplicates Tracking 205706 as yet unmatched pairs. 15001 records in RAM.
INFO 2026-06-08 08:32:35 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 2s. Last read position: chr11:57,332,985
INFO 2026-06-08 08:32:35 MarkDuplicates Tracking 205164 as yet unmatched pairs. 14448 records in RAM.
INFO 2026-06-08 08:32:38 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 2s. Last read position: chr11:59,781,636
INFO 2026-06-08 08:32:38 MarkDuplicates Tracking 204355 as yet unmatched pairs. 13631 records in RAM.
INFO 2026-06-08 08:32:40 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 2s. Last read position: chr11:62,517,285
INFO 2026-06-08 08:32:40 MarkDuplicates Tracking 204477 as yet unmatched pairs. 13716 records in RAM.
INFO 2026-06-08 08:32:42 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 2s. Last read position: chr11:62,572,611
INFO 2026-06-08 08:32:42 MarkDuplicates Tracking 203237 as yet unmatched pairs. 12467 records in RAM.
INFO 2026-06-08 08:32:44 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 2s. Last read position: chr11:63,636,260
INFO 2026-06-08 08:32:44 MarkDuplicates Tracking 202692 as yet unmatched pairs. 11912 records in RAM.
INFO 2026-06-08 08:32:46 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 2s. Last read position: chr11:64,368,183
INFO 2026-06-08 08:32:46 MarkDuplicates Tracking 201628 as yet unmatched pairs. 10847 records in RAM.
INFO 2026-06-08 08:32:48 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 2s. Last read position: chr11:65,424,584
INFO 2026-06-08 08:32:48 MarkDuplicates Tracking 200724 as yet unmatched pairs. 9940 records in RAM.
INFO 2026-06-08 08:32:51 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 2s. Last read position: chr11:65,554,336
INFO 2026-06-08 08:32:51 MarkDuplicates Tracking 200148 as yet unmatched pairs. 9342 records in RAM.
INFO 2026-06-08 08:32:53 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 2s. Last read position: chr11:66,056,914
INFO 2026-06-08 08:32:53 MarkDuplicates Tracking 199513 as yet unmatched pairs. 8697 records in RAM.
INFO 2026-06-08 08:32:55 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 2s. Last read position: chr11:66,871,351
INFO 2026-06-08 08:32:55 MarkDuplicates Tracking 198623 as yet unmatched pairs. 7798 records in RAM.
INFO 2026-06-08 08:32:57 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 2s. Last read position: chr11:67,628,093
INFO 2026-06-08 08:32:57 MarkDuplicates Tracking 197758 as yet unmatched pairs. 6930 records in RAM.
INFO 2026-06-08 08:32:59 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 2s. Last read position: chr11:71,444,135
INFO 2026-06-08 08:32:59 MarkDuplicates Tracking 197203 as yet unmatched pairs. 6372 records in RAM.
INFO 2026-06-08 08:33:01 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 2s. Last read position: chr11:75,165,879
INFO 2026-06-08 08:33:01 MarkDuplicates Tracking 196355 as yet unmatched pairs. 5514 records in RAM.
INFO 2026-06-08 08:33:03 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 2s. Last read position: chr11:78,722,678
INFO 2026-06-08 08:33:03 MarkDuplicates Tracking 195538 as yet unmatched pairs. 4696 records in RAM.
INFO 2026-06-08 08:33:05 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 2s. Last read position: chr11:96,359,038
INFO 2026-06-08 08:33:05 MarkDuplicates Tracking 195009 as yet unmatched pairs. 4150 records in RAM.
INFO 2026-06-08 08:33:07 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr11:108,486,361
INFO 2026-06-08 08:33:07 MarkDuplicates Tracking 194436 as yet unmatched pairs. 3564 records in RAM.
INFO 2026-06-08 08:33:09 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 2s. Last read position: chr11:117,393,105
INFO 2026-06-08 08:33:09 MarkDuplicates Tracking 193620 as yet unmatched pairs. 2744 records in RAM.
INFO 2026-06-08 08:33:12 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 2s. Last read position: chr11:119,045,280
INFO 2026-06-08 08:33:12 MarkDuplicates Tracking 192941 as yet unmatched pairs. 2063 records in RAM.
INFO 2026-06-08 08:33:14 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 2s. Last read position: chr11:120,480,092
INFO 2026-06-08 08:33:14 MarkDuplicates Tracking 192498 as yet unmatched pairs. 1620 records in RAM.
INFO 2026-06-08 08:33:16 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 2s. Last read position: chr11:125,088,119
INFO 2026-06-08 08:33:16 MarkDuplicates Tracking 191672 as yet unmatched pairs. 791 records in RAM.
INFO 2026-06-08 08:33:18 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 2s. Last read position: chr11:130,208,598
INFO 2026-06-08 08:33:18 MarkDuplicates Tracking 191103 as yet unmatched pairs. 211 records in RAM.
INFO 2026-06-08 08:33:21 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 2s. Last read position: chr12:2,801,338
INFO 2026-06-08 08:33:21 MarkDuplicates Tracking 190859 as yet unmatched pairs. 21812 records in RAM.
INFO 2026-06-08 08:33:24 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 2s. Last read position: chr12:6,363,451
INFO 2026-06-08 08:33:24 MarkDuplicates Tracking 189896 as yet unmatched pairs. 20846 records in RAM.
INFO 2026-06-08 08:33:27 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 3s. Last read position: chr12:6,748,487
INFO 2026-06-08 08:33:27 MarkDuplicates Tracking 189978 as yet unmatched pairs. 20925 records in RAM.
INFO 2026-06-08 08:33:30 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 3s. Last read position: chr12:7,062,667
INFO 2026-06-08 08:33:30 MarkDuplicates Tracking 188962 as yet unmatched pairs. 19906 records in RAM.
INFO 2026-06-08 08:33:34 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 3s. Last read position: chr12:8,941,720
INFO 2026-06-08 08:33:34 MarkDuplicates Tracking 187844 as yet unmatched pairs. 18785 records in RAM.
INFO 2026-06-08 08:33:37 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 3s. Last read position: chr12:12,330,788
INFO 2026-06-08 08:33:37 MarkDuplicates Tracking 187065 as yet unmatched pairs. 18000 records in RAM.
INFO 2026-06-08 08:33:39 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 2s. Last read position: chr12:16,399,757
INFO 2026-06-08 08:33:39 MarkDuplicates Tracking 186450 as yet unmatched pairs. 17383 records in RAM.
INFO 2026-06-08 08:33:41 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 2s. Last read position: chr12:26,990,516
INFO 2026-06-08 08:33:41 MarkDuplicates Tracking 186282 as yet unmatched pairs. 17213 records in RAM.
INFO 2026-06-08 08:33:43 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 2s. Last read position: chr12:40,322,060
INFO 2026-06-08 08:33:43 MarkDuplicates Tracking 185345 as yet unmatched pairs. 16267 records in RAM.
INFO 2026-06-08 08:33:46 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 3s. Last read position: chr12:48,826,995
INFO 2026-06-08 08:33:46 MarkDuplicates Tracking 184774 as yet unmatched pairs. 15689 records in RAM.
INFO 2026-06-08 08:33:49 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 3s. Last read position: chr12:49,272,343
INFO 2026-06-08 08:33:49 MarkDuplicates Tracking 185017 as yet unmatched pairs. 15930 records in RAM.
INFO 2026-06-08 08:33:52 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 2s. Last read position: chr12:51,049,070
INFO 2026-06-08 08:33:52 MarkDuplicates Tracking 183866 as yet unmatched pairs. 14775 records in RAM.
INFO 2026-06-08 08:33:54 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 2s. Last read position: chr12:52,306,194
INFO 2026-06-08 08:33:54 MarkDuplicates Tracking 182694 as yet unmatched pairs. 13596 records in RAM.
INFO 2026-06-08 08:33:56 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 2s. Last read position: chr12:53,411,021
INFO 2026-06-08 08:33:56 MarkDuplicates Tracking 182088 as yet unmatched pairs. 12985 records in RAM.
INFO 2026-06-08 08:33:58 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 2s. Last read position: chr12:54,408,922
INFO 2026-06-08 08:33:58 MarkDuplicates Tracking 181671 as yet unmatched pairs. 12565 records in RAM.
INFO 2026-06-08 08:34:00 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:15:16s. Time for last 1,000,000: 2s. Last read position: chr12:56,160,053
INFO 2026-06-08 08:34:00 MarkDuplicates Tracking 182212 as yet unmatched pairs. 13102 records in RAM.
INFO 2026-06-08 08:34:03 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 2s. Last read position: chr12:56,645,332
INFO 2026-06-08 08:34:03 MarkDuplicates Tracking 181821 as yet unmatched pairs. 12706 records in RAM.
INFO 2026-06-08 08:34:05 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:15:21s. Time for last 1,000,000: 2s. Last read position: chr12:57,128,923
INFO 2026-06-08 08:34:05 MarkDuplicates Tracking 179752 as yet unmatched pairs. 10637 records in RAM.
INFO 2026-06-08 08:34:07 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:15:23s. Time for last 1,000,000: 2s. Last read position: chr12:57,533,283
INFO 2026-06-08 08:34:07 MarkDuplicates Tracking 178853 as yet unmatched pairs. 9735 records in RAM.
INFO 2026-06-08 08:34:10 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:15:26s. Time for last 1,000,000: 2s. Last read position: chr12:65,245,928
INFO 2026-06-08 08:34:10 MarkDuplicates Tracking 178162 as yet unmatched pairs. 9034 records in RAM.
INFO 2026-06-08 08:34:13 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:15:29s. Time for last 1,000,000: 3s. Last read position: chr12:71,699,022
INFO 2026-06-08 08:34:13 MarkDuplicates Tracking 177646 as yet unmatched pairs. 8508 records in RAM.
INFO 2026-06-08 08:34:16 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:15:32s. Time for last 1,000,000: 3s. Last read position: chr12:91,158,317
INFO 2026-06-08 08:34:16 MarkDuplicates Tracking 177409 as yet unmatched pairs. 8250 records in RAM.
INFO 2026-06-08 08:34:18 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:15:34s. Time for last 1,000,000: 2s. Last read position: chr12:98,516,092
INFO 2026-06-08 08:34:18 MarkDuplicates Tracking 176510 as yet unmatched pairs. 7344 records in RAM.
INFO 2026-06-08 08:34:21 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:15:37s. Time for last 1,000,000: 2s. Last read position: chr12:103,934,043
INFO 2026-06-08 08:34:21 MarkDuplicates Tracking 177026 as yet unmatched pairs. 7849 records in RAM.
INFO 2026-06-08 08:34:23 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:15:39s. Time for last 1,000,000: 2s. Last read position: chr12:107,708,956
INFO 2026-06-08 08:34:23 MarkDuplicates Tracking 175407 as yet unmatched pairs. 6228 records in RAM.
INFO 2026-06-08 08:34:25 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:15:41s. Time for last 1,000,000: 2s. Last read position: chr12:110,340,982
INFO 2026-06-08 08:34:25 MarkDuplicates Tracking 174749 as yet unmatched pairs. 5567 records in RAM.
INFO 2026-06-08 08:34:27 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:15:43s. Time for last 1,000,000: 2s. Last read position: chr12:112,184,235
INFO 2026-06-08 08:34:27 MarkDuplicates Tracking 174054 as yet unmatched pairs. 4872 records in RAM.
INFO 2026-06-08 08:34:29 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:15:45s. Time for last 1,000,000: 2s. Last read position: chr12:113,186,779
INFO 2026-06-08 08:34:29 MarkDuplicates Tracking 173555 as yet unmatched pairs. 4371 records in RAM.
INFO 2026-06-08 08:34:32 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:15:48s. Time for last 1,000,000: 2s. Last read position: chr12:120,134,335
INFO 2026-06-08 08:34:32 MarkDuplicates Tracking 172881 as yet unmatched pairs. 3680 records in RAM.
INFO 2026-06-08 08:34:34 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:15:50s. Time for last 1,000,000: 2s. Last read position: chr12:120,764,955
INFO 2026-06-08 08:34:34 MarkDuplicates Tracking 172616 as yet unmatched pairs. 3412 records in RAM.
INFO 2026-06-08 08:34:36 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:15:52s. Time for last 1,000,000: 2s. Last read position: chr12:122,546,176
INFO 2026-06-08 08:34:36 MarkDuplicates Tracking 171700 as yet unmatched pairs. 2491 records in RAM.
INFO 2026-06-08 08:34:39 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:15:54s. Time for last 1,000,000: 2s. Last read position: chr12:124,344,852
INFO 2026-06-08 08:34:39 MarkDuplicates Tracking 170630 as yet unmatched pairs. 1415 records in RAM.
INFO 2026-06-08 08:34:41 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:15:56s. Time for last 1,000,000: 2s. Last read position: chr12:131,961,545
INFO 2026-06-08 08:34:41 MarkDuplicates Tracking 169944 as yet unmatched pairs. 727 records in RAM.
INFO 2026-06-08 08:34:42 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:15:58s. Time for last 1,000,000: 1s. Last read position: chr13:19,759,390
INFO 2026-06-08 08:34:42 MarkDuplicates Tracking 169494 as yet unmatched pairs. 7097 records in RAM.
INFO 2026-06-08 08:34:45 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:16:00s. Time for last 1,000,000: 2s. Last read position: chr13:20,189,028
INFO 2026-06-08 08:34:45 MarkDuplicates Tracking 170768 as yet unmatched pairs. 8369 records in RAM.
INFO 2026-06-08 08:34:47 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:16:03s. Time for last 1,000,000: 2s. Last read position: chr13:24,278,659
INFO 2026-06-08 08:34:47 MarkDuplicates Tracking 167933 as yet unmatched pairs. 5530 records in RAM.
INFO 2026-06-08 08:34:49 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:16:05s. Time for last 1,000,000: 2s. Last read position: chr13:30,462,618
INFO 2026-06-08 08:34:49 MarkDuplicates Tracking 168189 as yet unmatched pairs. 5777 records in RAM.
INFO 2026-06-08 08:34:51 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:16:07s. Time for last 1,000,000: 2s. Last read position: chr13:39,042,105
INFO 2026-06-08 08:34:51 MarkDuplicates Tracking 166952 as yet unmatched pairs. 4539 records in RAM.
INFO 2026-06-08 08:34:53 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:16:09s. Time for last 1,000,000: 2s. Last read position: chr13:45,338,702
INFO 2026-06-08 08:34:53 MarkDuplicates Tracking 171030 as yet unmatched pairs. 8614 records in RAM.
INFO 2026-06-08 08:34:56 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:16:12s. Time for last 1,000,000: 2s. Last read position: chr13:49,518,051
INFO 2026-06-08 08:34:56 MarkDuplicates Tracking 165672 as yet unmatched pairs. 3248 records in RAM.
INFO 2026-06-08 08:34:58 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:16:14s. Time for last 1,000,000: 2s. Last read position: chr13:75,292,104
INFO 2026-06-08 08:34:58 MarkDuplicates Tracking 165129 as yet unmatched pairs. 2683 records in RAM.
INFO 2026-06-08 08:35:00 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:16:16s. Time for last 1,000,000: 2s. Last read position: chr13:95,887,903
INFO 2026-06-08 08:35:00 MarkDuplicates Tracking 164589 as yet unmatched pairs. 2136 records in RAM.
INFO 2026-06-08 08:35:02 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:16:18s. Time for last 1,000,000: 2s. Last read position: chr13:100,179,099
INFO 2026-06-08 08:35:02 MarkDuplicates Tracking 163964 as yet unmatched pairs. 1509 records in RAM.
INFO 2026-06-08 08:35:05 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:16:20s. Time for last 1,000,000: 2s. Last read position: chr13:110,638,334
INFO 2026-06-08 08:35:05 MarkDuplicates Tracking 163419 as yet unmatched pairs. 955 records in RAM.
INFO 2026-06-08 08:35:06 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:16:22s. Time for last 1,000,000: 1s. Last read position: chr14:19,306,403
INFO 2026-06-08 08:35:06 MarkDuplicates Tracking 162454 as yet unmatched pairs. 11163 records in RAM.
INFO 2026-06-08 08:35:09 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:16:25s. Time for last 1,000,000: 2s. Last read position: chr14:21,474,878
INFO 2026-06-08 08:35:09 MarkDuplicates Tracking 161877 as yet unmatched pairs. 10578 records in RAM.
INFO 2026-06-08 08:35:12 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:16:28s. Time for last 1,000,000: 3s. Last read position: chr14:24,000,909
INFO 2026-06-08 08:35:12 MarkDuplicates Tracking 161269 as yet unmatched pairs. 9962 records in RAM.
INFO 2026-06-08 08:35:16 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:16:32s. Time for last 1,000,000: 3s. Last read position: chr14:30,639,821
INFO 2026-06-08 08:35:16 MarkDuplicates Tracking 160684 as yet unmatched pairs. 9372 records in RAM.
INFO 2026-06-08 08:35:18 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:16:34s. Time for last 1,000,000: 2s. Last read position: chr14:35,831,475
INFO 2026-06-08 08:35:18 MarkDuplicates Tracking 159899 as yet unmatched pairs. 8579 records in RAM.
INFO 2026-06-08 08:35:20 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:16:36s. Time for last 1,000,000: 1s. Last read position: chr14:49,586,705
INFO 2026-06-08 08:35:20 MarkDuplicates Tracking 162455 as yet unmatched pairs. 11126 records in RAM.
INFO 2026-06-08 08:35:21 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:16:37s. Time for last 1,000,000: 1s. Last read position: chr14:49,862,671
INFO 2026-06-08 08:35:21 MarkDuplicates Tracking 166669 as yet unmatched pairs. 15339 records in RAM.
INFO 2026-06-08 08:35:23 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:16:39s. Time for last 1,000,000: 1s. Last read position: chr14:54,432,164
INFO 2026-06-08 08:35:23 MarkDuplicates Tracking 159192 as yet unmatched pairs. 7852 records in RAM.
INFO 2026-06-08 08:35:25 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:16:41s. Time for last 1,000,000: 2s. Last read position: chr14:61,721,515
INFO 2026-06-08 08:35:25 MarkDuplicates Tracking 158816 as yet unmatched pairs. 7473 records in RAM.
INFO 2026-06-08 08:35:28 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:16:43s. Time for last 1,000,000: 2s. Last read position: chr14:67,778,166
INFO 2026-06-08 08:35:28 MarkDuplicates Tracking 157382 as yet unmatched pairs. 6031 records in RAM.
INFO 2026-06-08 08:35:30 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:16:46s. Time for last 1,000,000: 2s. Last read position: chr14:73,111,542
INFO 2026-06-08 08:35:30 MarkDuplicates Tracking 156867 as yet unmatched pairs. 5508 records in RAM.
INFO 2026-06-08 08:35:32 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:16:48s. Time for last 1,000,000: 2s. Last read position: chr14:75,651,866
INFO 2026-06-08 08:35:32 MarkDuplicates Tracking 156172 as yet unmatched pairs. 4809 records in RAM.
INFO 2026-06-08 08:35:35 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:16:51s. Time for last 1,000,000: 2s. Last read position: chr14:91,273,543
INFO 2026-06-08 08:35:35 MarkDuplicates Tracking 155357 as yet unmatched pairs. 3986 records in RAM.
INFO 2026-06-08 08:35:37 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:16:53s. Time for last 1,000,000: 2s. Last read position: chr14:96,311,569
INFO 2026-06-08 08:35:37 MarkDuplicates Tracking 155277 as yet unmatched pairs. 3903 records in RAM.
INFO 2026-06-08 08:35:39 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:16:55s. Time for last 1,000,000: 2s. Last read position: chr14:100,361,748
INFO 2026-06-08 08:35:39 MarkDuplicates Tracking 155175 as yet unmatched pairs. 3755 records in RAM.
INFO 2026-06-08 08:35:41 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:16:57s. Time for last 1,000,000: 2s. Last read position: chr14:102,886,221
INFO 2026-06-08 08:35:41 MarkDuplicates Tracking 153596 as yet unmatched pairs. 2173 records in RAM.
INFO 2026-06-08 08:35:43 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:16:59s. Time for last 1,000,000: 2s. Last read position: chr14:104,942,091
INFO 2026-06-08 08:35:43 MarkDuplicates Tracking 153386 as yet unmatched pairs. 1961 records in RAM.
INFO 2026-06-08 08:35:45 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:17:01s. Time for last 1,000,000: 2s. Last read position: chr14:105,469,469
INFO 2026-06-08 08:35:45 MarkDuplicates Tracking 152094 as yet unmatched pairs. 667 records in RAM.
INFO 2026-06-08 08:35:47 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:17:03s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,999
INFO 2026-06-08 08:35:47 MarkDuplicates Tracking 152430 as yet unmatched pairs. 1002 records in RAM.
INFO 2026-06-08 08:35:49 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:17:05s. Time for last 1,000,000: 2s. Last read position: chr15:30,562,771
INFO 2026-06-08 08:35:49 MarkDuplicates Tracking 150952 as yet unmatched pairs. 10397 records in RAM.
INFO 2026-06-08 08:35:52 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:17:07s. Time for last 1,000,000: 2s. Last read position: chr15:36,950,336
INFO 2026-06-08 08:35:52 MarkDuplicates Tracking 150370 as yet unmatched pairs. 9803 records in RAM.
INFO 2026-06-08 08:35:54 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:17:10s. Time for last 1,000,000: 2s. Last read position: chr15:40,853,744
INFO 2026-06-08 08:35:54 MarkDuplicates Tracking 149825 as yet unmatched pairs. 9250 records in RAM.
INFO 2026-06-08 08:35:56 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:17:12s. Time for last 1,000,000: 2s. Last read position: chr15:42,165,795
INFO 2026-06-08 08:35:56 MarkDuplicates Tracking 149103 as yet unmatched pairs. 8519 records in RAM.
INFO 2026-06-08 08:35:58 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:17:14s. Time for last 1,000,000: 1s. Last read position: chr15:43,698,727
INFO 2026-06-08 08:35:58 MarkDuplicates Tracking 148955 as yet unmatched pairs. 8367 records in RAM.
INFO 2026-06-08 08:36:00 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:17:16s. Time for last 1,000,000: 2s. Last read position: chr15:45,682,517
INFO 2026-06-08 08:36:00 MarkDuplicates Tracking 147966 as yet unmatched pairs. 7374 records in RAM.
INFO 2026-06-08 08:36:02 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:17:18s. Time for last 1,000,000: 2s. Last read position: chr15:52,521,319
INFO 2026-06-08 08:36:02 MarkDuplicates Tracking 147206 as yet unmatched pairs. 6614 records in RAM.
INFO 2026-06-08 08:36:04 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:17:20s. Time for last 1,000,000: 2s. Last read position: chr15:60,364,463
INFO 2026-06-08 08:36:04 MarkDuplicates Tracking 147385 as yet unmatched pairs. 6792 records in RAM.
INFO 2026-06-08 08:36:06 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:17:22s. Time for last 1,000,000: 2s. Last read position: chr15:64,865,815
INFO 2026-06-08 08:36:06 MarkDuplicates Tracking 146088 as yet unmatched pairs. 5484 records in RAM.
INFO 2026-06-08 08:36:08 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:17:24s. Time for last 1,000,000: 2s. Last read position: chr15:68,787,816
INFO 2026-06-08 08:36:08 MarkDuplicates Tracking 146090 as yet unmatched pairs. 5483 records in RAM.
INFO 2026-06-08 08:36:10 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:17:26s. Time for last 1,000,000: 2s. Last read position: chr15:72,664,947
INFO 2026-06-08 08:36:10 MarkDuplicates Tracking 144808 as yet unmatched pairs. 4197 records in RAM.
INFO 2026-06-08 08:36:13 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:17:29s. Time for last 1,000,000: 2s. Last read position: chr15:75,354,431
INFO 2026-06-08 08:36:13 MarkDuplicates Tracking 144136 as yet unmatched pairs. 3519 records in RAM.
INFO 2026-06-08 08:36:15 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:17:31s. Time for last 1,000,000: 2s. Last read position: chr15:78,891,496
INFO 2026-06-08 08:36:15 MarkDuplicates Tracking 143667 as yet unmatched pairs. 3046 records in RAM.
INFO 2026-06-08 08:36:17 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:17:33s. Time for last 1,000,000: 1s. Last read position: chr15:84,244,691
INFO 2026-06-08 08:36:17 MarkDuplicates Tracking 142837 as yet unmatched pairs. 2211 records in RAM.
INFO 2026-06-08 08:36:19 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:17:35s. Time for last 1,000,000: 1s. Last read position: chr15:89,667,013
INFO 2026-06-08 08:36:19 MarkDuplicates Tracking 142219 as yet unmatched pairs. 1587 records in RAM.
INFO 2026-06-08 08:36:21 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:17:37s. Time for last 1,000,000: 2s. Last read position: chr15:90,880,753
INFO 2026-06-08 08:36:21 MarkDuplicates Tracking 142052 as yet unmatched pairs. 1407 records in RAM.
INFO 2026-06-08 08:36:23 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:17:39s. Time for last 1,000,000: 2s. Last read position: chr15:101,176,772
INFO 2026-06-08 08:36:23 MarkDuplicates Tracking 140762 as yet unmatched pairs. 111 records in RAM.
INFO 2026-06-08 08:36:25 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 2s. Last read position: chr16:728,866
INFO 2026-06-08 08:36:25 MarkDuplicates Tracking 140187 as yet unmatched pairs. 15749 records in RAM.
INFO 2026-06-08 08:36:28 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:17:43s. Time for last 1,000,000: 2s. Last read position: chr16:1,964,473
INFO 2026-06-08 08:36:28 MarkDuplicates Tracking 139953 as yet unmatched pairs. 15508 records in RAM.
INFO 2026-06-08 08:36:30 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:17:46s. Time for last 1,000,000: 2s. Last read position: chr16:2,702,400
INFO 2026-06-08 08:36:30 MarkDuplicates Tracking 138369 as yet unmatched pairs. 13922 records in RAM.
INFO 2026-06-08 08:36:32 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:17:48s. Time for last 1,000,000: 2s. Last read position: chr16:3,289,419
INFO 2026-06-08 08:36:32 MarkDuplicates Tracking 137636 as yet unmatched pairs. 13186 records in RAM.
INFO 2026-06-08 08:36:34 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:17:50s. Time for last 1,000,000: 2s. Last read position: chr16:8,801,825
INFO 2026-06-08 08:36:34 MarkDuplicates Tracking 136962 as yet unmatched pairs. 12508 records in RAM.
INFO 2026-06-08 08:36:36 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:17:52s. Time for last 1,000,000: 2s. Last read position: chr16:14,261,115
INFO 2026-06-08 08:36:36 MarkDuplicates Tracking 136392 as yet unmatched pairs. 11935 records in RAM.
INFO 2026-06-08 08:36:38 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 1s. Last read position: chr16:16,111,376
INFO 2026-06-08 08:36:38 MarkDuplicates Tracking 136115 as yet unmatched pairs. 11657 records in RAM.
INFO 2026-06-08 08:36:40 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:17:56s. Time for last 1,000,000: 1s. Last read position: chr16:18,417,286
INFO 2026-06-08 08:36:40 MarkDuplicates Tracking 135481 as yet unmatched pairs. 11023 records in RAM.
INFO 2026-06-08 08:36:42 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 1s. Last read position: chr16:20,737,276
INFO 2026-06-08 08:36:42 MarkDuplicates Tracking 135184 as yet unmatched pairs. 10725 records in RAM.
INFO 2026-06-08 08:36:44 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 1s. Last read position: chr16:21,888,586
INFO 2026-06-08 08:36:44 MarkDuplicates Tracking 134955 as yet unmatched pairs. 10495 records in RAM.
INFO 2026-06-08 08:36:45 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:18:01s. Time for last 1,000,000: 1s. Last read position: chr16:23,623,047
INFO 2026-06-08 08:36:45 MarkDuplicates Tracking 134506 as yet unmatched pairs. 10031 records in RAM.
INFO 2026-06-08 08:36:47 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 2s. Last read position: chr16:28,713,753
INFO 2026-06-08 08:36:47 MarkDuplicates Tracking 133814 as yet unmatched pairs. 9334 records in RAM.
INFO 2026-06-08 08:36:49 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 1s. Last read position: chr16:29,483,981
INFO 2026-06-08 08:36:49 MarkDuplicates Tracking 133641 as yet unmatched pairs. 9155 records in RAM.
INFO 2026-06-08 08:36:51 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 1s. Last read position: chr16:30,069,948
INFO 2026-06-08 08:36:51 MarkDuplicates Tracking 134411 as yet unmatched pairs. 9925 records in RAM.
INFO 2026-06-08 08:36:54 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:18:09s. Time for last 1,000,000: 2s. Last read position: chr16:30,665,036
INFO 2026-06-08 08:36:54 MarkDuplicates Tracking 132480 as yet unmatched pairs. 7993 records in RAM.
INFO 2026-06-08 08:36:57 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 3s. Last read position: chr16:31,190,074
INFO 2026-06-08 08:36:57 MarkDuplicates Tracking 131780 as yet unmatched pairs. 7290 records in RAM.
INFO 2026-06-08 08:36:59 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 2s. Last read position: chr16:50,300,824
INFO 2026-06-08 08:36:59 MarkDuplicates Tracking 131008 as yet unmatched pairs. 6511 records in RAM.
INFO 2026-06-08 08:37:01 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:18:17s. Time for last 1,000,000: 2s. Last read position: chr16:56,608,607
INFO 2026-06-08 08:37:01 MarkDuplicates Tracking 131267 as yet unmatched pairs. 6761 records in RAM.
INFO 2026-06-08 08:37:04 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:18:20s. Time for last 1,000,000: 2s. Last read position: chr16:58,543,841
INFO 2026-06-08 08:37:04 MarkDuplicates Tracking 129582 as yet unmatched pairs. 5070 records in RAM.
INFO 2026-06-08 08:37:07 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 2s. Last read position: chr16:67,675,427
INFO 2026-06-08 08:37:07 MarkDuplicates Tracking 128855 as yet unmatched pairs. 4341 records in RAM.
INFO 2026-06-08 08:37:10 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 2s. Last read position: chr16:69,673,586
INFO 2026-06-08 08:37:10 MarkDuplicates Tracking 128225 as yet unmatched pairs. 3710 records in RAM.
INFO 2026-06-08 08:37:14 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 3s. Last read position: chr16:71,922,513
INFO 2026-06-08 08:37:14 MarkDuplicates Tracking 127894 as yet unmatched pairs. 3368 records in RAM.
INFO 2026-06-08 08:37:17 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 3s. Last read position: chr16:81,445,428
INFO 2026-06-08 08:37:17 MarkDuplicates Tracking 126979 as yet unmatched pairs. 2443 records in RAM.
INFO 2026-06-08 08:37:20 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 2s. Last read position: chr16:87,730,565
INFO 2026-06-08 08:37:20 MarkDuplicates Tracking 126190 as yet unmatched pairs. 1633 records in RAM.
INFO 2026-06-08 08:37:22 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 2s. Last read position: chr16:89,438,110
INFO 2026-06-08 08:37:22 MarkDuplicates Tracking 125285 as yet unmatched pairs. 717 records in RAM.
INFO 2026-06-08 08:37:24 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 2s. Last read position: chr17:746,696
INFO 2026-06-08 08:37:24 MarkDuplicates Tracking 124600 as yet unmatched pairs. 40330 records in RAM.
INFO 2026-06-08 08:37:26 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 2s. Last read position: chr17:1,471,139
INFO 2026-06-08 08:37:26 MarkDuplicates Tracking 124038 as yet unmatched pairs. 39764 records in RAM.
INFO 2026-06-08 08:37:28 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 2s. Last read position: chr17:1,891,833
INFO 2026-06-08 08:37:28 MarkDuplicates Tracking 123764 as yet unmatched pairs. 39489 records in RAM.
INFO 2026-06-08 08:37:31 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 2s. Last read position: chr17:3,903,547
INFO 2026-06-08 08:37:31 MarkDuplicates Tracking 122469 as yet unmatched pairs. 38185 records in RAM.
INFO 2026-06-08 08:37:33 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 2s. Last read position: chr17:4,891,609
INFO 2026-06-08 08:37:33 MarkDuplicates Tracking 121871 as yet unmatched pairs. 37587 records in RAM.
INFO 2026-06-08 08:37:35 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:18:51s. Time for last 1,000,000: 2s. Last read position: chr17:5,438,999
INFO 2026-06-08 08:37:35 MarkDuplicates Tracking 121027 as yet unmatched pairs. 36743 records in RAM.
INFO 2026-06-08 08:37:37 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 2s. Last read position: chr17:7,246,027
INFO 2026-06-08 08:37:37 MarkDuplicates Tracking 121391 as yet unmatched pairs. 37107 records in RAM.
INFO 2026-06-08 08:37:40 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 2s. Last read position: chr17:7,508,370
INFO 2026-06-08 08:37:40 MarkDuplicates Tracking 119901 as yet unmatched pairs. 35617 records in RAM.
INFO 2026-06-08 08:37:42 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 2s. Last read position: chr17:7,676,114
INFO 2026-06-08 08:37:42 MarkDuplicates Tracking 120105 as yet unmatched pairs. 35819 records in RAM.
INFO 2026-06-08 08:37:44 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 2s. Last read position: chr17:8,206,845
INFO 2026-06-08 08:37:44 MarkDuplicates Tracking 118214 as yet unmatched pairs. 33927 records in RAM.
INFO 2026-06-08 08:37:46 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 2s. Last read position: chr17:10,311,971
INFO 2026-06-08 08:37:46 MarkDuplicates Tracking 117498 as yet unmatched pairs. 33207 records in RAM.
INFO 2026-06-08 08:37:48 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 2s. Last read position: chr17:15,787,449
INFO 2026-06-08 08:37:48 MarkDuplicates Tracking 116960 as yet unmatched pairs. 32661 records in RAM.
INFO 2026-06-08 08:37:50 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 2s. Last read position: chr17:16,845,768
INFO 2026-06-08 08:37:50 MarkDuplicates Tracking 116303 as yet unmatched pairs. 32002 records in RAM.
INFO 2026-06-08 08:37:53 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 3s. Last read position: chr17:17,816,706
INFO 2026-06-08 08:37:53 MarkDuplicates Tracking 116034 as yet unmatched pairs. 31732 records in RAM.
INFO 2026-06-08 08:37:56 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 2s. Last read position: chr17:18,251,737
INFO 2026-06-08 08:37:56 MarkDuplicates Tracking 115315 as yet unmatched pairs. 31011 records in RAM.
INFO 2026-06-08 08:37:59 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 2s. Last read position: chr17:19,096,022
INFO 2026-06-08 08:37:59 MarkDuplicates Tracking 114210 as yet unmatched pairs. 29901 records in RAM.
INFO 2026-06-08 08:38:01 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 2s. Last read position: chr17:21,028,551
INFO 2026-06-08 08:38:01 MarkDuplicates Tracking 114435 as yet unmatched pairs. 30126 records in RAM.
INFO 2026-06-08 08:38:04 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 2s. Last read position: chr17:28,635,178
INFO 2026-06-08 08:38:04 MarkDuplicates Tracking 113560 as yet unmatched pairs. 29245 records in RAM.
INFO 2026-06-08 08:38:06 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 2s. Last read position: chr17:29,115,739
INFO 2026-06-08 08:38:06 MarkDuplicates Tracking 112398 as yet unmatched pairs. 28083 records in RAM.
INFO 2026-06-08 08:38:09 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 2s. Last read position: chr17:31,295,416
INFO 2026-06-08 08:38:09 MarkDuplicates Tracking 111977 as yet unmatched pairs. 27655 records in RAM.
INFO 2026-06-08 08:38:12 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 3s. Last read position: chr17:35,809,517
INFO 2026-06-08 08:38:12 MarkDuplicates Tracking 112674 as yet unmatched pairs. 28352 records in RAM.
INFO 2026-06-08 08:38:16 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 3s. Last read position: chr17:37,284,908
INFO 2026-06-08 08:38:16 MarkDuplicates Tracking 110779 as yet unmatched pairs. 26451 records in RAM.
INFO 2026-06-08 08:38:18 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 2s. Last read position: chr17:38,850,101
INFO 2026-06-08 08:38:18 MarkDuplicates Tracking 116051 as yet unmatched pairs. 31723 records in RAM.
INFO 2026-06-08 08:38:22 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 3s. Last read position: chr17:39,672,849
INFO 2026-06-08 08:38:22 MarkDuplicates Tracking 109394 as yet unmatched pairs. 25061 records in RAM.
INFO 2026-06-08 08:41:43 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:22:59s. Time for last 1,000,000: 201s. Last read position: chr17:39,726,562
INFO 2026-06-08 08:41:43 MarkDuplicates Tracking 109735 as yet unmatched pairs. 25398 records in RAM.
INFO 2026-06-08 08:41:45 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:23:01s. Time for last 1,000,000: 2s. Last read position: chr17:40,453,122
INFO 2026-06-08 08:41:45 MarkDuplicates Tracking 107840 as yet unmatched pairs. 23502 records in RAM.
INFO 2026-06-08 08:41:47 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:23:03s. Time for last 1,000,000: 2s. Last read position: chr17:41,619,614
INFO 2026-06-08 08:41:47 MarkDuplicates Tracking 115528 as yet unmatched pairs. 31178 records in RAM.
INFO 2026-06-08 08:41:50 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:23:06s. Time for last 1,000,000: 2s. Last read position: chr17:41,624,078
INFO 2026-06-08 08:41:50 MarkDuplicates Tracking 113237 as yet unmatched pairs. 28886 records in RAM.
INFO 2026-06-08 08:41:53 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:23:09s. Time for last 1,000,000: 3s. Last read position: chr17:41,854,542
INFO 2026-06-08 08:41:53 MarkDuplicates Tracking 105537 as yet unmatched pairs. 21185 records in RAM.
INFO 2026-06-08 08:41:57 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:23:13s. Time for last 1,000,000: 3s. Last read position: chr17:42,494,389
INFO 2026-06-08 08:41:57 MarkDuplicates Tracking 105008 as yet unmatched pairs. 20652 records in RAM.
INFO 2026-06-08 08:42:00 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:23:16s. Time for last 1,000,000: 3s. Last read position: chr17:43,094,626
INFO 2026-06-08 08:42:00 MarkDuplicates Tracking 104255 as yet unmatched pairs. 19899 records in RAM.
INFO 2026-06-08 08:42:03 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:23:19s. Time for last 1,000,000: 3s. Last read position: chr17:44,352,449
INFO 2026-06-08 08:42:03 MarkDuplicates Tracking 103624 as yet unmatched pairs. 19261 records in RAM.
INFO 2026-06-08 08:42:06 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:23:22s. Time for last 1,000,000: 3s. Last read position: chr17:46,624,301
INFO 2026-06-08 08:42:06 MarkDuplicates Tracking 103021 as yet unmatched pairs. 18658 records in RAM.
INFO 2026-06-08 08:42:10 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:23:25s. Time for last 1,000,000: 3s. Last read position: chr17:48,916,081
INFO 2026-06-08 08:42:10 MarkDuplicates Tracking 102504 as yet unmatched pairs. 18138 records in RAM.
INFO 2026-06-08 08:42:13 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:23:29s. Time for last 1,000,000: 3s. Last read position: chr17:50,186,425
INFO 2026-06-08 08:42:13 MarkDuplicates Tracking 104175 as yet unmatched pairs. 19808 records in RAM.
INFO 2026-06-08 08:42:16 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:23:32s. Time for last 1,000,000: 3s. Last read position: chr17:50,188,125
INFO 2026-06-08 08:42:16 MarkDuplicates Tracking 111253 as yet unmatched pairs. 26886 records in RAM.
INFO 2026-06-08 08:42:19 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:23:35s. Time for last 1,000,000: 2s. Last read position: chr17:50,190,004
INFO 2026-06-08 08:42:19 MarkDuplicates Tracking 108975 as yet unmatched pairs. 24605 records in RAM.
INFO 2026-06-08 08:42:21 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:23:37s. Time for last 1,000,000: 2s. Last read position: chr17:50,192,486
INFO 2026-06-08 08:42:21 MarkDuplicates Tracking 109953 as yet unmatched pairs. 25583 records in RAM.
INFO 2026-06-08 08:42:23 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:23:39s. Time for last 1,000,000: 2s. Last read position: chr17:50,194,407
INFO 2026-06-08 08:42:23 MarkDuplicates Tracking 114717 as yet unmatched pairs. 30339 records in RAM.
INFO 2026-06-08 08:42:26 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:23:42s. Time for last 1,000,000: 2s. Last read position: chr17:50,195,607
INFO 2026-06-08 08:42:26 MarkDuplicates Tracking 119287 as yet unmatched pairs. 34905 records in RAM.
INFO 2026-06-08 08:42:29 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:23:45s. Time for last 1,000,000: 2s. Last read position: chr17:50,197,034
INFO 2026-06-08 08:42:29 MarkDuplicates Tracking 125452 as yet unmatched pairs. 41070 records in RAM.
INFO 2026-06-08 08:42:32 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:23:48s. Time for last 1,000,000: 3s. Last read position: chr17:50,199,281
INFO 2026-06-08 08:42:32 MarkDuplicates Tracking 108404 as yet unmatched pairs. 24018 records in RAM.
INFO 2026-06-08 08:42:34 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:23:50s. Time for last 1,000,000: 2s. Last read position: chr17:50,970,846
INFO 2026-06-08 08:42:34 MarkDuplicates Tracking 95191 as yet unmatched pairs. 10805 records in RAM.
INFO 2026-06-08 08:42:37 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:23:53s. Time for last 1,000,000: 2s. Last read position: chr17:58,492,523
INFO 2026-06-08 08:42:37 MarkDuplicates Tracking 94744 as yet unmatched pairs. 10355 records in RAM.
INFO 2026-06-08 08:42:40 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:23:56s. Time for last 1,000,000: 3s. Last read position: chr17:59,668,803
INFO 2026-06-08 08:42:40 MarkDuplicates Tracking 95843 as yet unmatched pairs. 11454 records in RAM.
INFO 2026-06-08 08:42:43 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:23:59s. Time for last 1,000,000: 3s. Last read position: chr17:59,866,494
INFO 2026-06-08 08:42:43 MarkDuplicates Tracking 93063 as yet unmatched pairs. 8671 records in RAM.
INFO 2026-06-08 08:42:46 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:24:02s. Time for last 1,000,000: 2s. Last read position: chr17:63,552,330
INFO 2026-06-08 08:42:46 MarkDuplicates Tracking 92760 as yet unmatched pairs. 8360 records in RAM.
INFO 2026-06-08 08:42:50 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:24:06s. Time for last 1,000,000: 3s. Last read position: chr17:64,804,972
INFO 2026-06-08 08:42:50 MarkDuplicates Tracking 91833 as yet unmatched pairs. 7432 records in RAM.
INFO 2026-06-08 08:42:52 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:24:08s. Time for last 1,000,000: 2s. Last read position: chr17:68,525,786
INFO 2026-06-08 08:42:52 MarkDuplicates Tracking 91994 as yet unmatched pairs. 7592 records in RAM.
INFO 2026-06-08 08:42:55 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:24:11s. Time for last 1,000,000: 2s. Last read position: chr17:75,038,983
INFO 2026-06-08 08:42:55 MarkDuplicates Tracking 91742 as yet unmatched pairs. 7334 records in RAM.
INFO 2026-06-08 08:42:57 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:24:13s. Time for last 1,000,000: 2s. Last read position: chr17:75,778,589
INFO 2026-06-08 08:42:57 MarkDuplicates Tracking 90958 as yet unmatched pairs. 6550 records in RAM.
INFO 2026-06-08 08:42:59 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:24:15s. Time for last 1,000,000: 2s. Last read position: chr17:76,718,638
INFO 2026-06-08 08:42:59 MarkDuplicates Tracking 89244 as yet unmatched pairs. 4829 records in RAM.
INFO 2026-06-08 08:43:02 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:24:18s. Time for last 1,000,000: 2s. Last read position: chr17:78,971,677
INFO 2026-06-08 08:43:02 MarkDuplicates Tracking 88792 as yet unmatched pairs. 4375 records in RAM.
INFO 2026-06-08 08:43:05 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:24:21s. Time for last 1,000,000: 3s. Last read position: chr17:80,345,156
INFO 2026-06-08 08:43:05 MarkDuplicates Tracking 87680 as yet unmatched pairs. 3262 records in RAM.
INFO 2026-06-08 08:43:08 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:24:24s. Time for last 1,000,000: 3s. Last read position: chr17:81,567,517
INFO 2026-06-08 08:43:08 MarkDuplicates Tracking 87307 as yet unmatched pairs. 2885 records in RAM.
INFO 2026-06-08 08:43:11 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:24:27s. Time for last 1,000,000: 2s. Last read position: chr17:81,977,695
INFO 2026-06-08 08:43:11 MarkDuplicates Tracking 87676 as yet unmatched pairs. 3245 records in RAM.
INFO 2026-06-08 08:43:14 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:24:29s. Time for last 1,000,000: 2s. Last read position: chr17:82,237,394
INFO 2026-06-08 08:43:14 MarkDuplicates Tracking 85330 as yet unmatched pairs. 889 records in RAM.
INFO 2026-06-08 08:43:16 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:24:32s. Time for last 1,000,000: 2s. Last read position: chr18:745,708
INFO 2026-06-08 08:43:16 MarkDuplicates Tracking 84347 as yet unmatched pairs. 7062 records in RAM.
INFO 2026-06-08 08:43:18 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:24:34s. Time for last 1,000,000: 2s. Last read position: chr18:9,258,695
INFO 2026-06-08 08:43:18 MarkDuplicates Tracking 83936 as yet unmatched pairs. 6644 records in RAM.
INFO 2026-06-08 08:43:20 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:24:36s. Time for last 1,000,000: 2s. Last read position: chr18:12,325,997
INFO 2026-06-08 08:43:20 MarkDuplicates Tracking 84070 as yet unmatched pairs. 6770 records in RAM.
INFO 2026-06-08 08:43:23 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:24:39s. Time for last 1,000,000: 2s. Last read position: chr18:23,356,551
INFO 2026-06-08 08:43:23 MarkDuplicates Tracking 82677 as yet unmatched pairs. 5374 records in RAM.
INFO 2026-06-08 08:43:26 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:24:42s. Time for last 1,000,000: 3s. Last read position: chr18:31,024,469
INFO 2026-06-08 08:43:26 MarkDuplicates Tracking 83213 as yet unmatched pairs. 5909 records in RAM.
INFO 2026-06-08 08:43:28 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:24:44s. Time for last 1,000,000: 1s. Last read position: chr18:35,703,522
INFO 2026-06-08 08:43:28 MarkDuplicates Tracking 81372 as yet unmatched pairs. 4068 records in RAM.
INFO 2026-06-08 08:43:30 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:24:46s. Time for last 1,000,000: 2s. Last read position: chr18:36,266,756
INFO 2026-06-08 08:43:30 MarkDuplicates Tracking 82758 as yet unmatched pairs. 5452 records in RAM.
INFO 2026-06-08 08:43:33 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:24:49s. Time for last 1,000,000: 2s. Last read position: chr18:47,845,666
INFO 2026-06-08 08:43:33 MarkDuplicates Tracking 80341 as yet unmatched pairs. 3032 records in RAM.
INFO 2026-06-08 08:43:36 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:24:51s. Time for last 1,000,000: 2s. Last read position: chr18:50,582,594
INFO 2026-06-08 08:43:36 MarkDuplicates Tracking 79329 as yet unmatched pairs. 2020 records in RAM.
INFO 2026-06-08 08:43:39 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:24:55s. Time for last 1,000,000: 3s. Last read position: chr18:62,045,921
INFO 2026-06-08 08:43:39 MarkDuplicates Tracking 79349 as yet unmatched pairs. 2036 records in RAM.
INFO 2026-06-08 08:43:42 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:24:58s. Time for last 1,000,000: 3s. Last read position: chr18:63,659,498
INFO 2026-06-08 08:43:42 MarkDuplicates Tracking 80223 as yet unmatched pairs. 2910 records in RAM.
INFO 2026-06-08 08:43:46 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:25:02s. Time for last 1,000,000: 3s. Last read position: chr18:79,977,449
INFO 2026-06-08 08:43:46 MarkDuplicates Tracking 78989 as yet unmatched pairs. 1673 records in RAM.
INFO 2026-06-08 08:43:49 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:25:05s. Time for last 1,000,000: 3s. Last read position: chr19:1,043,178
INFO 2026-06-08 08:43:49 MarkDuplicates Tracking 76711 as yet unmatched pairs. 29758 records in RAM.
INFO 2026-06-08 08:43:53 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:25:09s. Time for last 1,000,000: 3s. Last read position: chr19:1,506,064
INFO 2026-06-08 08:43:53 MarkDuplicates Tracking 75804 as yet unmatched pairs. 28850 records in RAM.
INFO 2026-06-08 08:43:56 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:25:12s. Time for last 1,000,000: 2s. Last read position: chr19:2,767,617
INFO 2026-06-08 08:43:56 MarkDuplicates Tracking 75298 as yet unmatched pairs. 28341 records in RAM.
INFO 2026-06-08 08:43:58 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:25:14s. Time for last 1,000,000: 2s. Last read position: chr19:4,324,149
INFO 2026-06-08 08:43:58 MarkDuplicates Tracking 74341 as yet unmatched pairs. 27384 records in RAM.
INFO 2026-06-08 08:44:01 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:25:17s. Time for last 1,000,000: 2s. Last read position: chr19:5,691,433
INFO 2026-06-08 08:44:01 MarkDuplicates Tracking 73675 as yet unmatched pairs. 26713 records in RAM.
INFO 2026-06-08 08:44:04 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:25:20s. Time for last 1,000,000: 3s. Last read position: chr19:7,184,411
INFO 2026-06-08 08:44:04 MarkDuplicates Tracking 72427 as yet unmatched pairs. 25464 records in RAM.
INFO 2026-06-08 08:44:07 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:25:23s. Time for last 1,000,000: 2s. Last read position: chr19:9,152,212
INFO 2026-06-08 08:44:07 MarkDuplicates Tracking 71596 as yet unmatched pairs. 24633 records in RAM.
INFO 2026-06-08 08:44:09 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:25:25s. Time for last 1,000,000: 2s. Last read position: chr19:10,681,042
INFO 2026-06-08 08:44:09 MarkDuplicates Tracking 70802 as yet unmatched pairs. 23836 records in RAM.
INFO 2026-06-08 08:44:11 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:25:27s. Time for last 1,000,000: 2s. Last read position: chr19:12,627,739
INFO 2026-06-08 08:44:11 MarkDuplicates Tracking 70231 as yet unmatched pairs. 23265 records in RAM.
INFO 2026-06-08 08:44:14 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:25:30s. Time for last 1,000,000: 3s. Last read position: chr19:13,107,605
INFO 2026-06-08 08:44:14 MarkDuplicates Tracking 69312 as yet unmatched pairs. 22344 records in RAM.
INFO 2026-06-08 08:44:18 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:25:33s. Time for last 1,000,000: 3s. Last read position: chr19:14,622,011
INFO 2026-06-08 08:44:18 MarkDuplicates Tracking 68460 as yet unmatched pairs. 21492 records in RAM.
INFO 2026-06-08 08:44:22 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:25:38s. Time for last 1,000,000: 4s. Last read position: chr19:15,238,410
INFO 2026-06-08 08:44:22 MarkDuplicates Tracking 67662 as yet unmatched pairs. 20693 records in RAM.
INFO 2026-06-08 08:44:25 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:25:41s. Time for last 1,000,000: 3s. Last read position: chr19:17,278,868
INFO 2026-06-08 08:44:25 MarkDuplicates Tracking 66978 as yet unmatched pairs. 20009 records in RAM.
INFO 2026-06-08 08:44:29 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:25:45s. Time for last 1,000,000: 3s. Last read position: chr19:18,437,932
INFO 2026-06-08 08:44:29 MarkDuplicates Tracking 65983 as yet unmatched pairs. 19013 records in RAM.
INFO 2026-06-08 08:44:32 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:25:48s. Time for last 1,000,000: 3s. Last read position: chr19:19,656,168
INFO 2026-06-08 08:44:32 MarkDuplicates Tracking 65370 as yet unmatched pairs. 18396 records in RAM.
INFO 2026-06-08 08:44:35 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:25:51s. Time for last 1,000,000: 3s. Last read position: chr19:29,207,928
INFO 2026-06-08 08:44:35 MarkDuplicates Tracking 67747 as yet unmatched pairs. 20762 records in RAM.
INFO 2026-06-08 08:44:39 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:25:55s. Time for last 1,000,000: 3s. Last read position: chr19:33,207,343
INFO 2026-06-08 08:44:39 MarkDuplicates Tracking 64453 as yet unmatched pairs. 17463 records in RAM.
INFO 2026-06-08 08:44:41 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:25:57s. Time for last 1,000,000: 2s. Last read position: chr19:33,478,062
INFO 2026-06-08 08:44:41 MarkDuplicates Tracking 71274 as yet unmatched pairs. 24284 records in RAM.
INFO 2026-06-08 08:44:44 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:26:00s. Time for last 1,000,000: 3s. Last read position: chr19:35,110,907
INFO 2026-06-08 08:44:44 MarkDuplicates Tracking 62507 as yet unmatched pairs. 15516 records in RAM.
INFO 2026-06-08 08:44:48 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:26:04s. Time for last 1,000,000: 3s. Last read position: chr19:35,721,627
INFO 2026-06-08 08:44:48 MarkDuplicates Tracking 61623 as yet unmatched pairs. 14632 records in RAM.
INFO 2026-06-08 08:44:51 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:26:07s. Time for last 1,000,000: 2s. Last read position: chr19:37,981,408
INFO 2026-06-08 08:44:51 MarkDuplicates Tracking 60885 as yet unmatched pairs. 13894 records in RAM.
INFO 2026-06-08 08:44:54 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:26:10s. Time for last 1,000,000: 3s. Last read position: chr19:38,770,982
INFO 2026-06-08 08:44:54 MarkDuplicates Tracking 70152 as yet unmatched pairs. 23161 records in RAM.
INFO 2026-06-08 08:44:58 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:26:14s. Time for last 1,000,000: 3s. Last read position: chr19:39,173,050
INFO 2026-06-08 08:44:58 MarkDuplicates Tracking 59498 as yet unmatched pairs. 12507 records in RAM.
INFO 2026-06-08 08:45:02 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:26:17s. Time for last 1,000,000: 3s. Last read position: chr19:39,488,117
INFO 2026-06-08 08:45:02 MarkDuplicates Tracking 58775 as yet unmatched pairs. 11784 records in RAM.
INFO 2026-06-08 08:45:06 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:26:22s. Time for last 1,000,000: 4s. Last read position: chr19:40,610,599
INFO 2026-06-08 08:45:06 MarkDuplicates Tracking 58013 as yet unmatched pairs. 11022 records in RAM.
INFO 2026-06-08 08:45:09 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:26:24s. Time for last 1,000,000: 2s. Last read position: chr19:41,905,013
INFO 2026-06-08 08:45:09 MarkDuplicates Tracking 57539 as yet unmatched pairs. 10547 records in RAM.
INFO 2026-06-08 08:45:11 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:26:27s. Time for last 1,000,000: 2s. Last read position: chr19:42,407,752
INFO 2026-06-08 08:45:11 MarkDuplicates Tracking 56484 as yet unmatched pairs. 9482 records in RAM.
INFO 2026-06-08 08:45:14 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:26:29s. Time for last 1,000,000: 2s. Last read position: chr19:44,907,934
INFO 2026-06-08 08:45:14 MarkDuplicates Tracking 55634 as yet unmatched pairs. 8629 records in RAM.
INFO 2026-06-08 08:45:16 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:26:32s. Time for last 1,000,000: 2s. Last read position: chr19:45,427,474
INFO 2026-06-08 08:45:16 MarkDuplicates Tracking 54536 as yet unmatched pairs. 7531 records in RAM.
INFO 2026-06-08 08:45:18 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:26:34s. Time for last 1,000,000: 2s. Last read position: chr19:46,918,860
INFO 2026-06-08 08:45:18 MarkDuplicates Tracking 53819 as yet unmatched pairs. 6812 records in RAM.
INFO 2026-06-08 08:45:20 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:26:36s. Time for last 1,000,000: 2s. Last read position: chr19:48,615,336
INFO 2026-06-08 08:45:20 MarkDuplicates Tracking 54453 as yet unmatched pairs. 7444 records in RAM.
INFO 2026-06-08 08:45:23 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:26:39s. Time for last 1,000,000: 2s. Last read position: chr19:49,347,211
INFO 2026-06-08 08:45:23 MarkDuplicates Tracking 52194 as yet unmatched pairs. 5183 records in RAM.
INFO 2026-06-08 08:45:26 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:26:42s. Time for last 1,000,000: 2s. Last read position: chr19:49,645,374
INFO 2026-06-08 08:45:26 MarkDuplicates Tracking 51587 as yet unmatched pairs. 4574 records in RAM.
INFO 2026-06-08 08:45:28 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:26:44s. Time for last 1,000,000: 2s. Last read position: chr19:50,309,830
INFO 2026-06-08 08:45:28 MarkDuplicates Tracking 50479 as yet unmatched pairs. 3462 records in RAM.
INFO 2026-06-08 08:45:30 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:26:46s. Time for last 1,000,000: 2s. Last read position: chr19:53,577,052
INFO 2026-06-08 08:45:30 MarkDuplicates Tracking 49854 as yet unmatched pairs. 2835 records in RAM.
INFO 2026-06-08 08:45:33 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:26:49s. Time for last 1,000,000: 2s. Last read position: chr19:55,230,359
INFO 2026-06-08 08:45:33 MarkDuplicates Tracking 49073 as yet unmatched pairs. 2054 records in RAM.
INFO 2026-06-08 08:45:36 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:26:52s. Time for last 1,000,000: 2s. Last read position: chr19:55,692,004
INFO 2026-06-08 08:45:36 MarkDuplicates Tracking 48550 as yet unmatched pairs. 1531 records in RAM.
INFO 2026-06-08 08:45:38 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:26:54s. Time for last 1,000,000: 2s. Last read position: chr19:58,393,388
INFO 2026-06-08 08:45:38 MarkDuplicates Tracking 49253 as yet unmatched pairs. 2234 records in RAM.
INFO 2026-06-08 08:45:42 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:26:58s. Time for last 1,000,000: 3s. Last read position: chr20:2,103,155
INFO 2026-06-08 08:45:42 MarkDuplicates Tracking 46919 as yet unmatched pairs. 10446 records in RAM.
INFO 2026-06-08 08:45:44 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:27:00s. Time for last 1,000,000: 2s. Last read position: chr20:3,864,678
INFO 2026-06-08 08:45:44 MarkDuplicates Tracking 46057 as yet unmatched pairs. 9584 records in RAM.
INFO 2026-06-08 08:45:46 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:27:02s. Time for last 1,000,000: 2s. Last read position: chr20:17,607,081
INFO 2026-06-08 08:45:46 MarkDuplicates Tracking 45992 as yet unmatched pairs. 9518 records in RAM.
INFO 2026-06-08 08:45:50 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:27:05s. Time for last 1,000,000: 3s. Last read position: chr20:21,356,620
INFO 2026-06-08 08:45:50 MarkDuplicates Tracking 45529 as yet unmatched pairs. 9055 records in RAM.
INFO 2026-06-08 08:45:53 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:27:09s. Time for last 1,000,000: 3s. Last read position: chr20:32,133,016
INFO 2026-06-08 08:45:53 MarkDuplicates Tracking 44665 as yet unmatched pairs. 8186 records in RAM.
INFO 2026-06-08 08:45:56 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:27:12s. Time for last 1,000,000: 3s. Last read position: chr20:34,575,103
INFO 2026-06-08 08:45:56 MarkDuplicates Tracking 43569 as yet unmatched pairs. 7089 records in RAM.
INFO 2026-06-08 08:45:59 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:27:15s. Time for last 1,000,000: 2s. Last read position: chr20:35,653,070
INFO 2026-06-08 08:45:59 MarkDuplicates Tracking 43067 as yet unmatched pairs. 6582 records in RAM.
INFO 2026-06-08 08:46:02 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:27:18s. Time for last 1,000,000: 3s. Last read position: chr20:37,225,713
INFO 2026-06-08 08:46:02 MarkDuplicates Tracking 42776 as yet unmatched pairs. 6291 records in RAM.
INFO 2026-06-08 08:46:05 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:27:21s. Time for last 1,000,000: 3s. Last read position: chr20:41,355,959
INFO 2026-06-08 08:46:05 MarkDuplicates Tracking 41509 as yet unmatched pairs. 5024 records in RAM.
INFO 2026-06-08 08:46:08 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:27:24s. Time for last 1,000,000: 3s. Last read position: chr20:45,335,820
INFO 2026-06-08 08:46:08 MarkDuplicates Tracking 41345 as yet unmatched pairs. 4856 records in RAM.
INFO 2026-06-08 08:46:11 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:27:27s. Time for last 1,000,000: 3s. Last read position: chr20:47,640,651
INFO 2026-06-08 08:46:11 MarkDuplicates Tracking 40124 as yet unmatched pairs. 3635 records in RAM.
INFO 2026-06-08 08:46:14 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:27:30s. Time for last 1,000,000: 3s. Last read position: chr20:50,804,239
INFO 2026-06-08 08:46:14 MarkDuplicates Tracking 39396 as yet unmatched pairs. 2905 records in RAM.
INFO 2026-06-08 08:46:18 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:27:33s. Time for last 1,000,000: 3s. Last read position: chr20:57,354,782
INFO 2026-06-08 08:46:18 MarkDuplicates Tracking 39008 as yet unmatched pairs. 2517 records in RAM.
INFO 2026-06-08 08:46:21 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:27:37s. Time for last 1,000,000: 3s. Last read position: chr20:62,310,720
INFO 2026-06-08 08:46:21 MarkDuplicates Tracking 38110 as yet unmatched pairs. 1619 records in RAM.
INFO 2026-06-08 08:46:25 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:27:41s. Time for last 1,000,000: 3s. Last read position: chr20:63,564,886
INFO 2026-06-08 08:46:25 MarkDuplicates Tracking 37149 as yet unmatched pairs. 658 records in RAM.
INFO 2026-06-08 08:46:28 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:27:44s. Time for last 1,000,000: 3s. Last read position: chr21:6,119,770
INFO 2026-06-08 08:46:28 MarkDuplicates Tracking 36530 as yet unmatched pairs. 9652 records in RAM.
INFO 2026-06-08 08:46:30 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:27:46s. Time for last 1,000,000: 1s. Last read position: chr21:8,214,969
INFO 2026-06-08 08:46:30 MarkDuplicates Tracking 35949 as yet unmatched pairs. 9071 records in RAM.
INFO 2026-06-08 08:46:31 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:27:47s. Time for last 1,000,000: 1s. Last read position: chr21:8,250,550
INFO 2026-06-08 08:46:31 MarkDuplicates Tracking 34604 as yet unmatched pairs. 7698 records in RAM.
INFO 2026-06-08 08:46:33 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:27:49s. Time for last 1,000,000: 1s. Last read position: chr21:8,260,274
INFO 2026-06-08 08:46:33 MarkDuplicates Tracking 34116 as yet unmatched pairs. 7207 records in RAM.
INFO 2026-06-08 08:46:34 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:27:50s. Time for last 1,000,000: 1s. Last read position: chr21:8,399,028
INFO 2026-06-08 08:46:34 MarkDuplicates Tracking 34551 as yet unmatched pairs. 7642 records in RAM.
INFO 2026-06-08 08:46:36 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:27:52s. Time for last 1,000,000: 1s. Last read position: chr21:8,435,441
INFO 2026-06-08 08:46:36 MarkDuplicates Tracking 32991 as yet unmatched pairs. 6076 records in RAM.
INFO 2026-06-08 08:46:37 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:27:53s. Time for last 1,000,000: 1s. Last read position: chr21:8,443,292
INFO 2026-06-08 08:46:37 MarkDuplicates Tracking 32553 as yet unmatched pairs. 5638 records in RAM.
INFO 2026-06-08 08:46:39 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:27:55s. Time for last 1,000,000: 2s. Last read position: chr21:8,987,007
INFO 2026-06-08 08:46:39 MarkDuplicates Tracking 32119 as yet unmatched pairs. 5204 records in RAM.
INFO 2026-06-08 08:46:43 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:27:59s. Time for last 1,000,000: 3s. Last read position: chr21:29,039,134
INFO 2026-06-08 08:46:43 MarkDuplicates Tracking 30918 as yet unmatched pairs. 4002 records in RAM.
INFO 2026-06-08 08:46:46 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:28:02s. Time for last 1,000,000: 3s. Last read position: chr21:33,549,955
INFO 2026-06-08 08:46:46 MarkDuplicates Tracking 31191 as yet unmatched pairs. 4275 records in RAM.
INFO 2026-06-08 08:46:50 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:28:05s. Time for last 1,000,000: 3s. Last read position: chr21:37,121,906
INFO 2026-06-08 08:46:50 MarkDuplicates Tracking 29601 as yet unmatched pairs. 2683 records in RAM.
INFO 2026-06-08 08:46:53 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:28:09s. Time for last 1,000,000: 3s. Last read position: chr21:41,991,660
INFO 2026-06-08 08:46:53 MarkDuplicates Tracking 28846 as yet unmatched pairs. 1925 records in RAM.
INFO 2026-06-08 08:46:56 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:28:12s. Time for last 1,000,000: 3s. Last read position: chr21:44,771,357
INFO 2026-06-08 08:46:56 MarkDuplicates Tracking 28138 as yet unmatched pairs. 1217 records in RAM.
INFO 2026-06-08 08:46:59 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:28:15s. Time for last 1,000,000: 3s. Last read position: chr21:46,210,714
INFO 2026-06-08 08:46:59 MarkDuplicates Tracking 27330 as yet unmatched pairs. 409 records in RAM.
INFO 2026-06-08 08:47:02 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:28:18s. Time for last 1,000,000: 3s. Last read position: chr22:19,852,058
INFO 2026-06-08 08:47:02 MarkDuplicates Tracking 26722 as yet unmatched pairs. 9641 records in RAM.
INFO 2026-06-08 08:47:05 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:28:21s. Time for last 1,000,000: 3s. Last read position: chr22:21,769,179
INFO 2026-06-08 08:47:05 MarkDuplicates Tracking 25867 as yet unmatched pairs. 8786 records in RAM.
INFO 2026-06-08 08:47:08 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:28:24s. Time for last 1,000,000: 3s. Last read position: chr22:23,894,477
INFO 2026-06-08 08:47:08 MarkDuplicates Tracking 25687 as yet unmatched pairs. 8606 records in RAM.
INFO 2026-06-08 08:47:12 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:28:28s. Time for last 1,000,000: 3s. Last read position: chr22:29,272,394
INFO 2026-06-08 08:47:12 MarkDuplicates Tracking 25087 as yet unmatched pairs. 8006 records in RAM.
INFO 2026-06-08 08:47:16 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:28:32s. Time for last 1,000,000: 3s. Last read position: chr22:30,407,122
INFO 2026-06-08 08:47:16 MarkDuplicates Tracking 23659 as yet unmatched pairs. 6575 records in RAM.
INFO 2026-06-08 08:47:19 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:28:35s. Time for last 1,000,000: 3s. Last read position: chr22:36,141,550
INFO 2026-06-08 08:47:19 MarkDuplicates Tracking 23125 as yet unmatched pairs. 6041 records in RAM.
INFO 2026-06-08 08:47:22 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:28:38s. Time for last 1,000,000: 3s. Last read position: chr22:37,851,352
INFO 2026-06-08 08:47:22 MarkDuplicates Tracking 22868 as yet unmatched pairs. 5784 records in RAM.
INFO 2026-06-08 08:47:25 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:28:41s. Time for last 1,000,000: 3s. Last read position: chr22:39,317,460
INFO 2026-06-08 08:47:25 MarkDuplicates Tracking 23050 as yet unmatched pairs. 5966 records in RAM.
INFO 2026-06-08 08:47:28 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:28:44s. Time for last 1,000,000: 3s. Last read position: chr22:41,249,363
INFO 2026-06-08 08:47:28 MarkDuplicates Tracking 21154 as yet unmatched pairs. 4070 records in RAM.
INFO 2026-06-08 08:47:32 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:28:48s. Time for last 1,000,000: 3s. Last read position: chr22:42,587,516
INFO 2026-06-08 08:47:32 MarkDuplicates Tracking 20199 as yet unmatched pairs. 3115 records in RAM.
INFO 2026-06-08 08:47:35 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:28:51s. Time for last 1,000,000: 3s. Last read position: chr22:46,905,602
INFO 2026-06-08 08:47:35 MarkDuplicates Tracking 19350 as yet unmatched pairs. 2266 records in RAM.
INFO 2026-06-08 08:47:39 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:28:55s. Time for last 1,000,000: 3s. Last read position: chr22:50,503,542
INFO 2026-06-08 08:47:39 MarkDuplicates Tracking 18580 as yet unmatched pairs. 1496 records in RAM.
INFO 2026-06-08 08:47:42 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:28:58s. Time for last 1,000,000: 3s. Last read position: chr22:50,579,183
INFO 2026-06-08 08:47:42 MarkDuplicates Tracking 17650 as yet unmatched pairs. 566 records in RAM.
INFO 2026-06-08 08:47:45 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:29:01s. Time for last 1,000,000: 3s. Last read position: chrX:3,330,121
INFO 2026-06-08 08:47:45 MarkDuplicates Tracking 16670 as yet unmatched pairs. 9309 records in RAM.
INFO 2026-06-08 08:47:48 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:29:04s. Time for last 1,000,000: 3s. Last read position: chrX:18,895,148
INFO 2026-06-08 08:47:48 MarkDuplicates Tracking 15839 as yet unmatched pairs. 8462 records in RAM.
INFO 2026-06-08 08:47:51 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:29:07s. Time for last 1,000,000: 3s. Last read position: chrX:37,793,673
INFO 2026-06-08 08:47:51 MarkDuplicates Tracking 15310 as yet unmatched pairs. 7933 records in RAM.
INFO 2026-06-08 08:47:54 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:29:10s. Time for last 1,000,000: 2s. Last read position: chrX:41,349,415
INFO 2026-06-08 08:47:54 MarkDuplicates Tracking 14546 as yet unmatched pairs. 7169 records in RAM.
INFO 2026-06-08 08:47:57 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:29:13s. Time for last 1,000,000: 3s. Last read position: chrX:47,586,538
INFO 2026-06-08 08:47:57 MarkDuplicates Tracking 18128 as yet unmatched pairs. 10750 records in RAM.
INFO 2026-06-08 08:48:00 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:29:16s. Time for last 1,000,000: 3s. Last read position: chrX:53,194,660
INFO 2026-06-08 08:48:00 MarkDuplicates Tracking 13474 as yet unmatched pairs. 6096 records in RAM.
INFO 2026-06-08 08:48:03 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:29:19s. Time for last 1,000,000: 2s. Last read position: chrX:54,809,986
INFO 2026-06-08 08:48:03 MarkDuplicates Tracking 12651 as yet unmatched pairs. 5273 records in RAM.
INFO 2026-06-08 08:48:06 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:29:22s. Time for last 1,000,000: 3s. Last read position: chrX:71,387,261
INFO 2026-06-08 08:48:06 MarkDuplicates Tracking 12049 as yet unmatched pairs. 4671 records in RAM.
INFO 2026-06-08 08:48:09 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:29:25s. Time for last 1,000,000: 2s. Last read position: chrX:77,693,828
INFO 2026-06-08 08:48:09 MarkDuplicates Tracking 12034 as yet unmatched pairs. 4656 records in RAM.
INFO 2026-06-08 08:48:11 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:29:27s. Time for last 1,000,000: 2s. Last read position: chrX:103,585,602
INFO 2026-06-08 08:48:11 MarkDuplicates Tracking 11007 as yet unmatched pairs. 3629 records in RAM.
INFO 2026-06-08 08:48:14 MarkDuplicates Read 636,000,000 records. Elapsed time: 00:29:30s. Time for last 1,000,000: 2s. Last read position: chrX:119,539,725
INFO 2026-06-08 08:48:14 MarkDuplicates Tracking 10329 as yet unmatched pairs. 2951 records in RAM.
INFO 2026-06-08 08:48:17 MarkDuplicates Read 637,000,000 records. Elapsed time: 00:29:33s. Time for last 1,000,000: 3s. Last read position: chrX:130,014,933
INFO 2026-06-08 08:48:17 MarkDuplicates Tracking 9828 as yet unmatched pairs. 2450 records in RAM.
INFO 2026-06-08 08:48:21 MarkDuplicates Read 638,000,000 records. Elapsed time: 00:29:37s. Time for last 1,000,000: 3s. Last read position: chrX:149,504,166
INFO 2026-06-08 08:48:21 MarkDuplicates Tracking 9338 as yet unmatched pairs. 1960 records in RAM.
INFO 2026-06-08 08:48:24 MarkDuplicates Read 639,000,000 records. Elapsed time: 00:29:40s. Time for last 1,000,000: 3s. Last read position: chrX:153,959,870
INFO 2026-06-08 08:48:24 MarkDuplicates Tracking 8573 as yet unmatched pairs. 1195 records in RAM.
INFO 2026-06-08 08:48:28 MarkDuplicates Read 640,000,000 records. Elapsed time: 00:29:44s. Time for last 1,000,000: 3s. Last read position: chrX:154,465,717
INFO 2026-06-08 08:48:28 MarkDuplicates Tracking 7691 as yet unmatched pairs. 313 records in RAM.
INFO 2026-06-08 08:48:31 MarkDuplicates Read 641,000,000 records. Elapsed time: 00:29:47s. Time for last 1,000,000: 3s. Last read position: chrM:6,230
INFO 2026-06-08 08:48:31 MarkDuplicates Tracking 7979 as yet unmatched pairs. 1218 records in RAM.
INFO 2026-06-08 08:48:35 MarkDuplicates Read 642,000,000 records. Elapsed time: 00:29:51s. Time for last 1,000,000: 3s. Last read position: chrM:15,317
INFO 2026-06-08 08:48:35 MarkDuplicates Tracking 6929 as yet unmatched pairs. 168 records in RAM.
INFO 2026-06-08 08:48:37 MarkDuplicates Read 643,000,000 records. Elapsed time: 00:29:53s. Time for last 1,000,000: 2s. Last read position: GL000220.1:114,351
INFO 2026-06-08 08:48:37 MarkDuplicates Tracking 6583 as yet unmatched pairs. 1382 records in RAM.
INFO 2026-06-08 08:48:40 MarkDuplicates Read 644,000,000 records. Elapsed time: 00:29:56s. Time for last 1,000,000: 2s. Last read position: GL000220.1:117,484
INFO 2026-06-08 08:48:40 MarkDuplicates Tracking 5334 as yet unmatched pairs. 132 records in RAM.
INFO 2026-06-08 08:48:41 MarkDuplicates Read 645,000,000 records. Elapsed time: 00:29:57s. Time for last 1,000,000: 1s. Last read position: GL000220.1:158,409
INFO 2026-06-08 08:48:41 MarkDuplicates Tracking 5317 as yet unmatched pairs. 115 records in RAM.
INFO 2026-06-08 08:48:43 MarkDuplicates Read 646,000,000 records. Elapsed time: 00:29:59s. Time for last 1,000,000: 1s. Last read position: KI270435.1:1,292
INFO 2026-06-08 08:48:43 MarkDuplicates Tracking 5196 as yet unmatched pairs. 0 records in RAM.
INFO 2026-06-08 08:48:45 MarkDuplicates Read 647,000,000 records. Elapsed time: 00:30:01s. Time for last 1,000,000: 1s. Last read position: KI270733.1:129,924
INFO 2026-06-08 08:48:45 MarkDuplicates Tracking 5682 as yet unmatched pairs. 5641 records in RAM.
INFO 2026-06-08 08:48:46 MarkDuplicates Read 648,000,000 records. Elapsed time: 00:30:02s. Time for last 1,000,000: 1s. Last read position: KI270733.1:133,550
INFO 2026-06-08 08:48:46 MarkDuplicates Tracking 3625 as yet unmatched pairs. 3584 records in RAM.
INFO 2026-06-08 08:48:48 MarkDuplicates Read 649,000,000 records. Elapsed time: 00:30:04s. Time for last 1,000,000: 1s. Last read position: KI270733.1:174,878
INFO 2026-06-08 08:48:48 MarkDuplicates Tracking 1026 as yet unmatched pairs. 985 records in RAM.
INFO 2026-06-08 08:48:50 MarkDuplicates Read 650,000,000 records. Elapsed time: 00:30:06s. Time for last 1,000,000: 1s. Last read position: KI270733.1:178,572
INFO 2026-06-08 08:48:50 MarkDuplicates Tracking 66 as yet unmatched pairs. 25 records in RAM.
INFO 2026-06-08 08:48:50 MarkDuplicates Read 650304389 records. 0 pairs never matched.
INFO 2026-06-08 08:50:13 MarkDuplicates After buildSortedReadEndLists freeMemory: 204131368; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:50:13 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 08:50:19 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 08:50:19 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:50:30 OpticalDuplicateFinder Large duplicate set. size = 1101
INFO 2026-06-08 08:50:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,532
INFO 2026-06-08 08:50:30 OpticalDuplicateFinder Large duplicate set. size = 1066
INFO 2026-06-08 08:50:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,522
INFO 2026-06-08 08:50:30 OpticalDuplicateFinder Large duplicate set. size = 1303
INFO 2026-06-08 08:50:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,776
INFO 2026-06-08 08:50:30 OpticalDuplicateFinder Large duplicate set. size = 1460
INFO 2026-06-08 08:50:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,718
INFO 2026-06-08 08:50:30 OpticalDuplicateFinder Large duplicate set. size = 1473
INFO 2026-06-08 08:50:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,928
INFO 2026-06-08 08:50:30 OpticalDuplicateFinder Large duplicate set. size = 1243
INFO 2026-06-08 08:50:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,092
INFO 2026-06-08 08:50:30 OpticalDuplicateFinder Large duplicate set. size = 1230
INFO 2026-06-08 08:50:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,136
INFO 2026-06-08 08:51:02 OpticalDuplicateFinder Large duplicate set. size = 1166
INFO 2026-06-08 08:51:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,116
INFO 2026-06-08 08:51:06 OpticalDuplicateFinder Large duplicate set. size = 1064
INFO 2026-06-08 08:51:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,324
INFO 2026-06-08 08:51:06 OpticalDuplicateFinder Large duplicate set. size = 1191
INFO 2026-06-08 08:51:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,710
INFO 2026-06-08 08:51:06 OpticalDuplicateFinder Large duplicate set. size = 1649
INFO 2026-06-08 08:51:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,016
INFO 2026-06-08 08:51:06 OpticalDuplicateFinder Large duplicate set. size = 1080
INFO 2026-06-08 08:51:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,635
INFO 2026-06-08 08:51:06 OpticalDuplicateFinder Large duplicate set. size = 1060
INFO 2026-06-08 08:51:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,264
INFO 2026-06-08 08:51:06 OpticalDuplicateFinder Large duplicate set. size = 1016
INFO 2026-06-08 08:51:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,331
INFO 2026-06-08 08:51:06 OpticalDuplicateFinder Large duplicate set. size = 1627
INFO 2026-06-08 08:51:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,938
INFO 2026-06-08 08:51:06 OpticalDuplicateFinder Large duplicate set. size = 1751
INFO 2026-06-08 08:51:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,379
INFO 2026-06-08 08:51:06 OpticalDuplicateFinder Large duplicate set. size = 2009
INFO 2026-06-08 08:51:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,866
INFO 2026-06-08 08:51:06 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,022
INFO 2026-06-08 08:51:06 OpticalDuplicateFinder Large duplicate set. size = 1351
INFO 2026-06-08 08:51:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,524
INFO 2026-06-08 08:51:06 OpticalDuplicateFinder Large duplicate set. size = 2751
INFO 2026-06-08 08:51:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,813
INFO 2026-06-08 08:51:06 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,148
INFO 2026-06-08 08:51:06 OpticalDuplicateFinder Large duplicate set. size = 1102
INFO 2026-06-08 08:51:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,764
INFO 2026-06-08 08:51:06 OpticalDuplicateFinder Large duplicate set. size = 1790
INFO 2026-06-08 08:51:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,943
INFO 2026-06-08 08:51:06 OpticalDuplicateFinder Large duplicate set. size = 1091
INFO 2026-06-08 08:51:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,318
INFO 2026-06-08 08:51:06 OpticalDuplicateFinder Large duplicate set. size = 1492
INFO 2026-06-08 08:51:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,403
INFO 2026-06-08 08:51:06 OpticalDuplicateFinder Large duplicate set. size = 1254
INFO 2026-06-08 08:51:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,492
INFO 2026-06-08 08:51:06 OpticalDuplicateFinder Large duplicate set. size = 1284
INFO 2026-06-08 08:51:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,764
INFO 2026-06-08 08:51:20 OpticalDuplicateFinder Large duplicate set. size = 1053
INFO 2026-06-08 08:51:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,997
INFO 2026-06-08 08:51:20 OpticalDuplicateFinder Large duplicate set. size = 1471
INFO 2026-06-08 08:51:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,492
INFO 2026-06-08 08:51:20 OpticalDuplicateFinder Large duplicate set. size = 2064
INFO 2026-06-08 08:51:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,633
INFO 2026-06-08 08:51:20 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,195
INFO 2026-06-08 08:51:20 OpticalDuplicateFinder Large duplicate set. size = 1088
INFO 2026-06-08 08:51:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,004
INFO 2026-06-08 08:51:20 OpticalDuplicateFinder Large duplicate set. size = 1583
INFO 2026-06-08 08:51:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,105
INFO 2026-06-08 08:51:20 OpticalDuplicateFinder Large duplicate set. size = 1421
INFO 2026-06-08 08:51:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,466
INFO 2026-06-08 08:51:24 OpticalDuplicateFinder Large duplicate set. size = 1092
INFO 2026-06-08 08:51:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,373
INFO 2026-06-08 08:51:24 OpticalDuplicateFinder Large duplicate set. size = 1302
INFO 2026-06-08 08:51:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,345
INFO 2026-06-08 08:51:24 OpticalDuplicateFinder Large duplicate set. size = 1046
INFO 2026-06-08 08:51:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,755
INFO 2026-06-08 08:51:24 OpticalDuplicateFinder Large duplicate set. size = 1262
INFO 2026-06-08 08:51:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,727
INFO 2026-06-08 08:51:24 OpticalDuplicateFinder Large duplicate set. size = 1054
INFO 2026-06-08 08:51:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,733
INFO 2026-06-08 08:51:53 OpticalDuplicateFinder Large duplicate set. size = 1063
INFO 2026-06-08 08:51:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,500
INFO 2026-06-08 08:51:54 OpticalDuplicateFinder Large duplicate set. size = 1073
INFO 2026-06-08 08:51:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,034
INFO 2026-06-08 08:52:09 OpticalDuplicateFinder Large duplicate set. size = 1243
INFO 2026-06-08 08:52:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,108
INFO 2026-06-08 08:52:09 OpticalDuplicateFinder Large duplicate set. size = 1152
INFO 2026-06-08 08:52:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,686
INFO 2026-06-08 08:52:09 OpticalDuplicateFinder Large duplicate set. size = 1349
INFO 2026-06-08 08:52:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,510
INFO 2026-06-08 08:52:15 OpticalDuplicateFinder Large duplicate set. size = 1420
INFO 2026-06-08 08:52:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,958
INFO 2026-06-08 08:52:15 OpticalDuplicateFinder Large duplicate set. size = 2216
INFO 2026-06-08 08:52:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,731
INFO 2026-06-08 08:52:15 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,229
INFO 2026-06-08 08:52:15 OpticalDuplicateFinder Large duplicate set. size = 1144
INFO 2026-06-08 08:52:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,488
INFO 2026-06-08 08:52:15 OpticalDuplicateFinder Large duplicate set. size = 1418
INFO 2026-06-08 08:52:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,279
INFO 2026-06-08 08:52:15 OpticalDuplicateFinder Large duplicate set. size = 1773
INFO 2026-06-08 08:52:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,704
INFO 2026-06-08 08:53:00 OpticalDuplicateFinder Large duplicate set. size = 1063
INFO 2026-06-08 08:53:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,488
INFO 2026-06-08 08:53:00 OpticalDuplicateFinder Large duplicate set. size = 1140
INFO 2026-06-08 08:53:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,469
INFO 2026-06-08 08:53:09 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 08:53:09 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:55:22 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 08:55:24 MarkDuplicates After generateDuplicateIndexes freeMemory: 203937120; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:55:24 MarkDuplicates Marking 301515074 records as duplicates.
INFO 2026-06-08 08:55:24 MarkDuplicates Found 28447252 optical duplicate clusters.
INFO 2026-06-08 08:55:25 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 08:55:52 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:26s. Time for last 10,000,000: 26s. Last read position: chr1:22,086,813
INFO 2026-06-08 08:56:18 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:53s. Time for last 10,000,000: 26s. Last read position: chr1:46,691,857
INFO 2026-06-08 08:56:45 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:01:20s. Time for last 10,000,000: 26s. Last read position: chr1:117,778,567
INFO 2026-06-08 08:57:10 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:45s. Time for last 10,000,000: 25s. Last read position: chr1:152,033,696
INFO 2026-06-08 08:57:37 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:02:12s. Time for last 10,000,000: 26s. Last read position: chr1:156,135,898
INFO 2026-06-08 08:58:05 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:02:40s. Time for last 10,000,000: 28s. Last read position: chr1:182,872,460
INFO 2026-06-08 08:58:32 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:03:07s. Time for last 10,000,000: 26s. Last read position: chr1:220,020,192
INFO 2026-06-08 08:58:58 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:03:33s. Time for last 10,000,000: 26s. Last read position: chr2:9,588,215
INFO 2026-06-08 08:59:29 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:04:04s. Time for last 10,000,000: 30s. Last read position: chr2:46,543,035
INFO 2026-06-08 09:00:02 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:04:37s. Time for last 10,000,000: 32s. Last read position: chr2:99,180,861
INFO 2026-06-08 09:00:35 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:05:10s. Time for last 10,000,000: 33s. Last read position: chr2:173,266,063
INFO 2026-06-08 09:01:03 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:05:38s. Time for last 10,000,000: 28s. Last read position: chr2:215,375,350
INFO 2026-06-08 09:01:31 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:06:06s. Time for last 10,000,000: 27s. Last read position: chr3:4,979,710
INFO 2026-06-08 09:01:58 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:06:33s. Time for last 10,000,000: 26s. Last read position: chr3:51,970,054
INFO 2026-06-08 09:02:24 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:06:59s. Time for last 10,000,000: 26s. Last read position: chr3:149,960,807
INFO 2026-06-08 09:02:52 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:07:27s. Time for last 10,000,000: 27s. Last read position: chr4:23,469,740
INFO 2026-06-08 09:03:19 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:07:54s. Time for last 10,000,000: 26s. Last read position: chr4:122,347,567
INFO 2026-06-08 09:03:45 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:08:20s. Time for last 10,000,000: 26s. Last read position: chr5:42,565,892
INFO 2026-06-08 09:04:11 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:08:46s. Time for last 10,000,000: 26s. Last read position: chr5:135,353,010
INFO 2026-06-08 09:04:38 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:09:13s. Time for last 10,000,000: 26s. Last read position: chr5:176,397,942
INFO 2026-06-08 09:05:06 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:09:41s. Time for last 10,000,000: 27s. Last read position: chr6:30,712,321
INFO 2026-06-08 09:05:32 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:10:07s. Time for last 10,000,000: 26s. Last read position: chr6:63,685,542
INFO 2026-06-08 09:06:00 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:10:35s. Time for last 10,000,000: 27s. Last read position: chr6:149,919,553
INFO 2026-06-08 09:06:28 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:11:03s. Time for last 10,000,000: 28s. Last read position: chr7:44,040,265
INFO 2026-06-08 09:07:00 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:11:35s. Time for last 10,000,000: 32s. Last read position: chr7:76,329,546
INFO 2026-06-08 09:07:27 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:12:02s. Time for last 10,000,000: 26s. Last read position: chr7:127,694,856
INFO 2026-06-08 09:07:54 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:12:29s. Time for last 10,000,000: 26s. Last read position: chr8:22,571,120
INFO 2026-06-08 09:08:20 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:12:55s. Time for last 10,000,000: 26s. Last read position: chr8:98,045,035
INFO 2026-06-08 09:08:45 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:13:20s. Time for last 10,000,000: 24s. Last read position: chr8:143,730,357
INFO 2026-06-08 09:09:08 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:13:43s. Time for last 10,000,000: 23s. Last read position: chr9:19,077,201
INFO 2026-06-08 09:09:36 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:14:11s. Time for last 10,000,000: 27s. Last read position: chr9:91,733,400
INFO 2026-06-08 09:10:03 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:14:38s. Time for last 10,000,000: 26s. Last read position: chr9:134,439,836
INFO 2026-06-08 09:10:29 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:15:04s. Time for last 10,000,000: 25s. Last read position: chr10:46,014,448
INFO 2026-06-08 09:10:58 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:15:33s. Time for last 10,000,000: 29s. Last read position: chr10:119,071,058
INFO 2026-06-08 09:11:24 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:15:59s. Time for last 10,000,000: 25s. Last read position: chr11:46,681,298
INFO 2026-06-08 09:11:50 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:16:25s. Time for last 10,000,000: 25s. Last read position: chr11:66,871,351
INFO 2026-06-08 09:12:16 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:16:51s. Time for last 10,000,000: 26s. Last read position: chr11:125,088,119
INFO 2026-06-08 09:12:42 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:17:16s. Time for last 10,000,000: 25s. Last read position: chr12:40,322,060
INFO 2026-06-08 09:13:07 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:17:42s. Time for last 10,000,000: 25s. Last read position: chr12:57,533,283
INFO 2026-06-08 09:13:33 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:18:08s. Time for last 10,000,000: 26s. Last read position: chr12:120,134,335
INFO 2026-06-08 09:13:58 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:18:33s. Time for last 10,000,000: 24s. Last read position: chr13:45,338,702
INFO 2026-06-08 09:14:23 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:18:58s. Time for last 10,000,000: 25s. Last read position: chr14:35,831,475
INFO 2026-06-08 09:14:50 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:19:25s. Time for last 10,000,000: 26s. Last read position: chr14:100,361,748
INFO 2026-06-08 09:15:19 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:19:54s. Time for last 10,000,000: 29s. Last read position: chr15:45,682,517
INFO 2026-06-08 09:15:46 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:20:21s. Time for last 10,000,000: 27s. Last read position: chr15:90,880,753
INFO 2026-06-08 09:16:12 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:20:47s. Time for last 10,000,000: 25s. Last read position: chr16:20,737,276
INFO 2026-06-08 09:16:37 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:21:12s. Time for last 10,000,000: 25s. Last read position: chr16:58,543,841
INFO 2026-06-08 09:17:03 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:21:38s. Time for last 10,000,000: 25s. Last read position: chr17:3,903,547
INFO 2026-06-08 09:17:28 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:22:03s. Time for last 10,000,000: 25s. Last read position: chr17:17,816,706
INFO 2026-06-08 09:17:57 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:22:32s. Time for last 10,000,000: 29s. Last read position: chr17:39,672,849
INFO 2026-06-08 09:18:27 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:23:02s. Time for last 10,000,000: 29s. Last read position: chr17:48,916,081
INFO 2026-06-08 09:18:54 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:23:29s. Time for last 10,000,000: 27s. Last read position: chr17:58,492,523
INFO 2026-06-08 09:19:19 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:23:54s. Time for last 10,000,000: 24s. Last read position: chr17:80,345,156
INFO 2026-06-08 09:19:45 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:24:20s. Time for last 10,000,000: 26s. Last read position: chr18:36,266,756
INFO 2026-06-08 09:20:13 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:24:48s. Time for last 10,000,000: 28s. Last read position: chr19:5,691,433
INFO 2026-06-08 09:20:38 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:25:13s. Time for last 10,000,000: 25s. Last read position: chr19:19,656,168
INFO 2026-06-08 09:21:04 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:25:39s. Time for last 10,000,000: 25s. Last read position: chr19:40,610,599
INFO 2026-06-08 09:21:29 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:26:04s. Time for last 10,000,000: 25s. Last read position: chr19:53,577,052
INFO 2026-06-08 09:21:55 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:26:30s. Time for last 10,000,000: 25s. Last read position: chr20:35,653,070
INFO 2026-06-08 09:22:20 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:26:55s. Time for last 10,000,000: 24s. Last read position: chr21:8,214,969
INFO 2026-06-08 09:22:43 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:27:18s. Time for last 10,000,000: 23s. Last read position: chr21:41,991,660
INFO 2026-06-08 09:23:09 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:27:44s. Time for last 10,000,000: 25s. Last read position: chr22:39,317,460
INFO 2026-06-08 09:23:34 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:28:09s. Time for last 10,000,000: 25s. Last read position: chrX:47,586,538
INFO 2026-06-08 09:24:00 MarkDuplicates Written 640,000,000 records. Elapsed time: 00:28:35s. Time for last 10,000,000: 25s. Last read position: chrX:154,465,717
INFO 2026-06-08 09:24:22 MarkDuplicates Written 650,000,000 records. Elapsed time: 00:28:57s. Time for last 10,000,000: 21s. Last read position: KI270733.1:178,572
INFO 2026-06-08 09:24:32 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:24:32 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:24:32 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:24:32 MarkDuplicates Before output close freeMemory: 203875352; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:24:32 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:24:32 MarkDuplicates After output close freeMemory: 104131224; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:24:32 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 65.84 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory