File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/781ff3fd4911740fb731c33bab800d/.command.log
Size
4.1 KB
Task
NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:FLOWCELL_QC (20251217_LH00166_0224_B23H5VFLT4)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/de2681e4ef37de7e2c3759dc583c4b/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/92c56398ec2202e7ef9d9796e3be24/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/ea53bc901de2a111244d585d63dc3f/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/illumina_run_folders/data/20251217_LH00166_0224_B23H5VFLT4/InterOp/ExtendedTileMetricsOut.bin
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/97/5c5ef481cfd8b05501dd97953b8790/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/illumina_run_folders/data/20251217_LH00166_0224_B23H5VFLT4/InterOp/EmpiricalPhasingMetricsOut.bin
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/ea53bc901de2a111244d585d63dc3f/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/781ff3fd4911740fb731c33bab800d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/de2681e4ef37de7e2c3759dc583c4b/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/ea53bc901de2a111244d585d63dc3f/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/73de145827dbbd349c3aba9dd001dc/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/24ff362521a76e2899e0b5d941e75c/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/92c56398ec2202e7ef9d9796e3be24/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/illumina_run_folders/data/20251217_LH00166_0224_B23H5VFLT4/InterOp/TileMetricsOut.bin
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/73de145827dbbd349c3aba9dd001dc/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/9458faf140bed424a38d67cf7943e9/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/92c56398ec2202e7ef9d9796e3be24/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/9458faf140bed424a38d67cf7943e9/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/9458faf140bed424a38d67cf7943e9/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/97/5c5ef481cfd8b05501dd97953b8790/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/22f4d689d90589a81c34653078a0af/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/de2681e4ef37de7e2c3759dc583c4b/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/22f4d689d90589a81c34653078a0af/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/24ff362521a76e2899e0b5d941e75c/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/24ff362521a76e2899e0b5d941e75c/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/73de145827dbbd349c3aba9dd001dc/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/22f4d689d90589a81c34653078a0af/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/781ff3fd4911740fb731c33bab800d/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/illumina_run_folders/data/20251217_LH00166_0224_B23H5VFLT4/RunInfo.xml
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/97/5c5ef481cfd8b05501dd97953b8790/output/Reports/Index_Hopping_Counts.csv
==> STAGING COMPLETE (30 inputs)

Wrote flowcell_qc.csv with 13/13 metrics populated