.command.sh - Workdir - NFCORE_RNAFUSION:RNAFUSION:CONTAMINATION_TO_MULTIQC (HD789_0002_RNA_0008_23H5VFLT4_s19)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/64c18c8941b760711bf1d5e7ed3a28/.command.sh
Size: 433 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:CONTAMINATION_TO_MULTIQC (HD789_0002_RNA_0008_23H5VFLT4_s19)
Attempt

Content

#!/bin/bash -euo pipefail
contamination_to_multiqc.py \
    "HD789_0002_RNA_0008_23H5VFLT4_s19.predictions.csv" \
    --output "HD789_0002_RNA_0008_23H5VFLT4_s19_contamination_mqc.tsv" \
    --sample-id "HD789_0002_RNA_0008_23H5VFLT4_s19"

cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:RNAFUSION:CONTAMINATION_TO_MULTIQC":
    python: $(python3 --version | sed 's/Python //g')
    contamination_to_multiqc: 1.0.0
END_VERSIONS