Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/8fb69bfa4d75339175efa3bf3ec475/V4_0001_RNA_0005_23H5VFLT4_s43.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/621feb0c72e380885da99cca161409/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/621feb0c72e380885da99cca161409/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory