.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:ARRIBA_VISUALISATION (tih_rna_sample_00104_23H5VFLT4_s20)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/da0108ed1aa28e4f0dc70a2b979a49/.command.log
Size: 8.4 KB
Task: NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:ARRIBA_VISUALISATION (tih_rna_sample_00104_23H5VFLT4_s20)
Attempt
Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/42714a2da9de9f68f196a07b83a733/tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/da0108ed1aa28e4f0dc70a2b979a49/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/2e954fe44a05c84c9d51fa2c5abcf0/tih_rna_sample_00104_23H5VFLT4_s20.FusionInspector.fusions.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/arriba/cytobands_hg38_GRCh38_v2.4.0.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_annot.gtf
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/arriba/protein_domains_hg38_GRCh38_v2.4.0.gff3
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/da0108ed1aa28e4f0dc70a2b979a49/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/470633ec6875aa44e851b44cd7b6c7/tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (8 inputs)

Loading annotation
Read 3041209 records
Warning in parseGtfAttribute("exon_number", exons) :
  Failed to parse 'exon_number' attribute of 8 record(s).
Loading protein domains
Read 134356 records
Drawing fusion #1: DTD1:KIF16B
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #2: DTD1:KIF16B
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #3: DTD1:KIF16B
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #4: RRBP1:BFSP1
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #5: RRBP1:BFSP1
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #6: RRBP1:BFSP1
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #7: RRBP1:BFSP1
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #8: RRBP1:BFSP1
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #9: TVP23C:CDRT4
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #10: TVP23C:CDRT4
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #11: TVP23C:CDRT4
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #12: TVP23C:CDRT4
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #13: TVP23C:CDRT4
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00104_23H5VFLT4_s20.Aligned.sortedByCoord.out.bam.bai
Done