File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/2f23c8a005089ab77f2e7dda786956/.command.log
Size
8.5 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (tih_rna_sample_00096_23H5VFLT4_s11)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-5b456d70-fab3-4fcc-916c-bc437f411fba/5f/4d32fc1f4ec7fe5ef236279e51ead4/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/2f23c8a005089ab77f2e7dda786956/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/2f23c8a005089ab77f2e7dda786956/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/8b03d24bbf54f44b4bf9b9c17efcc9/tih_rna_sample_00096_23H5VFLT4_s11.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/5def8397b542b91c8dcfbaa3eece5b/tih_rna_sample_00096_23H5VFLT4_s11.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
UVRAG--KDM2A
starfusion
arriba
CTTN--SPCS2
starfusion
arriba
SHANK2--DLG2
starfusion
arriba
CCS--ACTN3
starfusion
arriba
FSIP1--AC013652.1
starfusion
arriba
CHERP--OR2Z1
starfusion
arriba
TMEM138--AP001107.6
starfusion
arriba
LSP1--AC013734.1
starfusion
arriba
ST3GAL1--NDRG1
starfusion
KDM4B--NFIC
starfusion
ARHGEF17--CCS
starfusion
arriba
TLK2--AC240565.1
starfusion
STX16--NPEPL1
starfusion
arriba
NCOA6--AHCY
starfusion
arriba
GRPEL2--HSPA9
starfusion
TSG101--CLPB
starfusion
arriba
AL049555.1--LLGL2
starfusion
GOLGA6L10--GOLGA2P6
starfusion
SSRP1--BDNF
arriba
VTCN1--VTCN1
arriba
Metazoa_SRP--VTCN1
arriba
PCDHA10--PCDHAC1
arriba
PCDHA10--PCDHAC2
arriba
PCDHA10--PCDHA13
arriba
TVP23C--CDRT4
arriba
RBM14--RBM4
arriba
HOXC13--HOXC11
arriba
HOXC12--HOXC11
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHA13
arriba
AC015911.9--SLFN12L
arriba
HOXC13--HOXC10
arriba
HOXC12--HOXC10
arriba
CCDC169--SOHLH2
arriba
KLRC4--KLRK1
arriba
CLPB--RNU1-84P
arriba
CLPB--AP001107.5
arriba

  0%|          | 0/38 [00:00<?, ?it/s]
Processing UVRAG--KDM2A:   0%|          | 0/38 [00:00<?, ?it/s]
Processing UVRAG--KDM2A:   3%|▎         | 1/38 [00:00<00:04,  9.07it/s]
Processing CTTN--SPCS2:   3%|▎         | 1/38 [00:00<00:04,  9.07it/s] 
Processing CTTN--SPCS2:   5%|▌         | 2/38 [00:00<00:03,  9.37it/s]
Processing SHANK2--DLG2:   5%|▌         | 2/38 [00:00<00:03,  9.37it/s]
Processing SHANK2--DLG2:   8%|▊         | 3/38 [00:00<00:03,  9.46it/s]
Processing CCS--ACTN3:   8%|▊         | 3/38 [00:00<00:03,  9.46it/s]  
Processing CCS--ACTN3:  11%|█         | 4/38 [00:00<00:03,  9.50it/s]
Processing FSIP1--AC013652.1:  11%|█         | 4/38 [00:00<00:03,  9.50it/s]
Processing FSIP1--AC013652.1:  13%|█▎        | 5/38 [00:00<00:03,  9.53it/s]
Processing CHERP--OR2Z1:  13%|█▎        | 5/38 [00:00<00:03,  9.53it/s]     
Processing CHERP--OR2Z1:  16%|█▌        | 6/38 [00:00<00:03,  9.53it/s]
Processing TMEM138--AP001107.6:  16%|█▌        | 6/38 [00:00<00:03,  9.53it/s]
Processing TMEM138--AP001107.6:  18%|█▊        | 7/38 [00:00<00:03,  9.54it/s]
Processing LSP1--AC013734.1:  18%|█▊        | 7/38 [00:00<00:03,  9.54it/s]   
Processing LSP1--AC013734.1:  21%|██        | 8/38 [00:00<00:03,  9.54it/s]
Processing ST3GAL1--NDRG1:  21%|██        | 8/38 [00:00<00:03,  9.54it/s]  
Processing ST3GAL1--NDRG1:  24%|██▎       | 9/38 [00:00<00:03,  9.56it/s]
Processing KDM4B--NFIC:  24%|██▎       | 9/38 [00:00<00:03,  9.56it/s]   
Processing KDM4B--NFIC:  26%|██▋       | 10/38 [00:01<00:02,  9.56it/s]
Processing ARHGEF17--CCS:  26%|██▋       | 10/38 [00:01<00:02,  9.56it/s]
Processing ARHGEF17--CCS:  29%|██▉       | 11/38 [00:01<00:02,  9.54it/s]
Processing TLK2--AC240565.1:  29%|██▉       | 11/38 [00:01<00:02,  9.54it/s]
Processing TLK2--AC240565.1:  32%|███▏      | 12/38 [00:01<00:02,  9.56it/s]
Processing STX16--NPEPL1:  32%|███▏      | 12/38 [00:01<00:02,  9.56it/s]   
Processing STX16--NPEPL1:  34%|███▍      | 13/38 [00:01<00:02,  9.55it/s]
Processing NCOA6--AHCY:  34%|███▍      | 13/38 [00:01<00:02,  9.55it/s]  
Processing NCOA6--AHCY:  37%|███▋      | 14/38 [00:01<00:02,  9.54it/s]
Processing GRPEL2--HSPA9:  37%|███▋      | 14/38 [00:01<00:02,  9.54it/s]
Processing GRPEL2--HSPA9:  39%|███▉      | 15/38 [00:01<00:02,  9.55it/s]
Processing TSG101--CLPB:  39%|███▉      | 15/38 [00:01<00:02,  9.55it/s] 
Processing TSG101--CLPB:  42%|████▏     | 16/38 [00:01<00:02,  9.56it/s]
Processing AL049555.1--LLGL2:  42%|████▏     | 16/38 [00:01<00:02,  9.56it/s]
Processing AL049555.1--LLGL2:  45%|████▍     | 17/38 [00:01<00:02,  9.55it/s]
Processing GOLGA6L10--GOLGA2P6:  45%|████▍     | 17/38 [00:01<00:02,  9.55it/s]
Processing GOLGA6L10--GOLGA2P6:  47%|████▋     | 18/38 [00:01<00:02,  9.56it/s]
Processing SSRP1--BDNF:  47%|████▋     | 18/38 [00:01<00:02,  9.56it/s]        
Processing SSRP1--BDNF:  50%|█████     | 19/38 [00:01<00:01,  9.55it/s]
Processing VTCN1--VTCN1:  50%|█████     | 19/38 [00:01<00:01,  9.55it/s]
Processing VTCN1--VTCN1:  53%|█████▎    | 20/38 [00:02<00:01,  9.54it/s]
Processing Metazoa_SRP--VTCN1:  53%|█████▎    | 20/38 [00:02<00:01,  9.54it/s]
Processing Metazoa_SRP--VTCN1:  55%|█████▌    | 21/38 [00:02<00:01,  9.54it/s]
Processing PCDHA10--PCDHAC1:  55%|█████▌    | 21/38 [00:02<00:01,  9.54it/s]  
Processing PCDHA10--PCDHAC1:  58%|█████▊    | 22/38 [00:02<00:01,  9.56it/s]
Processing PCDHA10--PCDHAC2:  58%|█████▊    | 22/38 [00:02<00:01,  9.56it/s]
Processing PCDHA10--PCDHAC2:  61%|██████    | 23/38 [00:02<00:01,  9.53it/s]
Processing PCDHA10--PCDHA13:  61%|██████    | 23/38 [00:02<00:01,  9.53it/s]
Processing PCDHA10--PCDHA13:  63%|██████▎   | 24/38 [00:02<00:01,  9.53it/s]
Processing TVP23C--CDRT4:  63%|██████▎   | 24/38 [00:02<00:01,  9.53it/s]   
Processing TVP23C--CDRT4:  66%|██████▌   | 25/38 [00:02<00:01,  9.54it/s]
Processing RBM14--RBM4:  66%|██████▌   | 25/38 [00:02<00:01,  9.54it/s]  
Processing RBM14--RBM4:  68%|██████▊   | 26/38 [00:02<00:01,  9.54it/s]
Processing HOXC13--HOXC11:  68%|██████▊   | 26/38 [00:02<00:01,  9.54it/s]
Processing HOXC13--HOXC11:  71%|███████   | 27/38 [00:02<00:01,  9.53it/s]
Processing HOXC12--HOXC11:  71%|███████   | 27/38 [00:02<00:01,  9.53it/s]
Processing HOXC12--HOXC11:  74%|███████▎  | 28/38 [00:02<00:01,  9.52it/s]
Processing PCDHA4--PCDHAC1:  74%|███████▎  | 28/38 [00:02<00:01,  9.52it/s]
Processing PCDHA4--PCDHAC1:  76%|███████▋  | 29/38 [00:03<00:00,  9.53it/s]
Processing PCDHA4--PCDHAC2:  76%|███████▋  | 29/38 [00:03<00:00,  9.53it/s]
Processing PCDHA4--PCDHAC2:  79%|███████▉  | 30/38 [00:03<00:00,  9.55it/s]
Processing PCDHA4--PCDHA13:  79%|███████▉  | 30/38 [00:03<00:00,  9.55it/s]
Processing PCDHA4--PCDHA13:  82%|████████▏ | 31/38 [00:03<00:00,  9.55it/s]
Processing AC015911.9--SLFN12L:  82%|████████▏ | 31/38 [00:03<00:00,  9.55it/s]
Processing AC015911.9--SLFN12L:  84%|████████▍ | 32/38 [00:03<00:00,  9.56it/s]
Processing HOXC13--HOXC10:  84%|████████▍ | 32/38 [00:03<00:00,  9.56it/s]     
Processing HOXC13--HOXC10:  87%|████████▋ | 33/38 [00:03<00:00,  9.55it/s]
Processing HOXC12--HOXC10:  87%|████████▋ | 33/38 [00:03<00:00,  9.55it/s]
Processing HOXC12--HOXC10:  89%|████████▉ | 34/38 [00:03<00:00,  9.54it/s]
Processing CCDC169--SOHLH2:  89%|████████▉ | 34/38 [00:03<00:00,  9.54it/s]
Processing CCDC169--SOHLH2:  92%|█████████▏| 35/38 [00:03<00:00,  9.55it/s]
Processing KLRC4--KLRK1:  92%|█████████▏| 35/38 [00:03<00:00,  9.55it/s]   
Processing KLRC4--KLRK1:  95%|█████████▍| 36/38 [00:03<00:00,  9.54it/s]
Processing CLPB--RNU1-84P:  95%|█████████▍| 36/38 [00:03<00:00,  9.54it/s]
Processing CLPB--RNU1-84P:  97%|█████████▋| 37/38 [00:03<00:00,  9.54it/s]
Processing CLPB--AP001107.5:  97%|█████████▋| 37/38 [00:03<00:00,  9.54it/s]
Processing CLPB--AP001107.5: 100%|██████████| 38/38 [00:03<00:00,  9.51it/s]
Processing CLPB--AP001107.5: 100%|██████████| 38/38 [00:03<00:00,  9.53it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory