Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/06ef061c7b0f9e35e21bb93e492047/GM24385_0001_RNA_0001_23H5VFLT4_s32.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/9055d4b0da3d2fb2a1c6cf662c7616/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/4fc2085a57d0b01b5bc176356fd930/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/4fc2085a57d0b01b5bc176356fd930/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/03cfc4207eb002aeb18f46e1cc3627/GM24385_0001_RNA_0001_23H5VFLT4_s32.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 196471723
[W::hts_idx_load3] The index file is older than the data file: GM24385_0001_RNA_0001_23H5VFLT4_s32.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	196471723
Known Splicing Events:	194165329
Partial Novel Splicing Events:	1400721
Novel Splicing Events:	833776
Filtered Splicing Events:	71897

Total splicing  Junctions:	334909
Known Splicing Junctions:	203398
Partial Novel Splicing Junctions:	78382
Novel Splicing Junctions:	53129

===================================================================
Create BED file ...
Create Interact file ...