.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (tih_rna_sample_00105_23H5VFLT4_s21)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/e03ac3b8ac35c2e642f0e989d936ff/.command.log
Size: 1.3 KB
Task: NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (tih_rna_sample_00105_23H5VFLT4_s21)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-5b456d70-fab3-4fcc-916c-bc437f411fba/5f/4d32fc1f4ec7fe5ef236279e51ead4/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/e03ac3b8ac35c2e642f0e989d936ff/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/e03ac3b8ac35c2e642f0e989d936ff/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/abdd5626baebc6fa029a9185d90711/tih_rna_sample_00105_23H5VFLT4_s21.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/7098fd13a1c08aaecb2c840464c22c/tih_rna_sample_00105_23H5VFLT4_s21.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

[32mRunning application...[0m
PGM2L1--AP002495.1
starfusion
arriba

  0%|          | 0/1 [00:00<?, ?it/s]
Processing PGM2L1--AP002495.1:   0%|          | 0/1 [00:00<?, ?it/s]
Processing PGM2L1--AP002495.1: 100%|██████████| 1/1 [00:00<00:00,  8.36it/s]
Processing PGM2L1--AP002495.1: 100%|██████████| 1/1 [00:00<00:00,  8.34it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory