Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/708828745aa92ea96e9a7231bb51c7/tih_rna_sample_00105_23H5VFLT4_s21.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/dd4726765831ddd128c4944e9b9be7/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/dd4726765831ddd128c4944e9b9be7/.command.run
==> STAGING COMPLETE (3 inputs)
PAIRED_END_BAM_INPUT
Processed 1000000 records
Processed 2000000 records
Processed 3000000 records
Processed 4000000 records
Processed 5000000 records
Processed 6000000 records
Processed 7000000 records
Processed 8000000 records
Processed 9000000 records
Processed 10000000 records
Processed 11000000 records
Processed 12000000 records
Processed 13000000 records
Processed 14000000 records
Processed 15000000 records
Processed 16000000 records
Processed 17000000 records
Processed 18000000 records
Processed 19000000 records
Processed 20000000 records
Processed 21000000 records
Processed 22000000 records
Processed 23000000 records
Processed 24000000 records
Processed 25000000 records
Processed 26000000 records
Processed 27000000 records
Processed 28000000 records
Processed 29000000 records
Processed 30000000 records
Processed 31000000 records
Processed 32000000 records
Processed 33000000 records
Processed 34000000 records
Processed 35000000 records
Processed 36000000 records
Processed 37000000 records
Processed 38000000 records
Processed 39000000 records
Processed 40000000 records
Processed 41000000 records
Processed 42000000 records
Processed 43000000 records
Processed 44000000 records
Processed 45000000 records
Processed 46000000 records
Processed 47000000 records
Processed 48000000 records
Processed 49000000 records
Processed 50000000 records
Processed 51000000 records
Processed 52000000 records
Processed 53000000 records
Processed 54000000 records
Processed 55000000 records
Processed 56000000 records
Processed 57000000 records
Processed 58000000 records
Processed 59000000 records
Processed 60000000 records
Processed 61000000 records
Processed 62000000 records
Processed 63000000 records
Processed 64000000 records
Processed 65000000 records
Processed 66000000 records
Processed 67000000 records
Processed 68000000 records
Processed 69000000 records
Processed 70000000 records
Processed 71000000 records
Processed 72000000 records
Processed 73000000 records
Processed 74000000 records
Processed 75000000 records
Processed 76000000 records
Processed 77000000 records
Processed 78000000 records
Processed 79000000 records
Processed 80000000 records
Processed 81000000 records
Processed 82000000 records
Processed 83000000 records
Processed 84000000 records
Processed 85000000 records
Processed 86000000 records
Processed 87000000 records
Processed 88000000 records
Processed 89000000 records
Processed 90000000 records
Processed 91000000 records
Processed 92000000 records
Processed 93000000 records
Processed 94000000 records
Processed 95000000 records
Processed 96000000 records
Processed 97000000 records
Processed 98000000 records
Processed 99000000 records
Processed 100000000 records
Processed 101000000 records
Processed 102000000 records
Processed 103000000 records
Processed 104000000 records
Processed 105000000 records
Processed 106000000 records
Processed 107000000 records
Processed 108000000 records
Processed 109000000 records
paired = 54186363
unpaired = 1010577
MERGED PAIRED END READS = 54186363
MATES PROCESSED = 109383303
TOTAL READS = 55196940
DISTINCT READS = 1.89821e+07
DISTINCT COUNTS = 314
MAX COUNT = 65474
COUNTS OF 1 = 1.00922e+07
MAX TERMS = 100
OBSERVED COUNTS (65475)
1 10092246
2 3041607
3 1465498
4 985251
5 742388
6 577054
7 447453
8 347839
9 268295
10 208002
11 161641
12 125327
13 97424
14 76312
15 60169
16 47858
17 38192
18 30969
19 25289
20 20515
21 17059
22 14034
23 11831
24 10047
25 8646
26 7211
27 6226
28 5443
29 4784
30 4078
31 3609
32 3095
33 2712
34 2439
35 2161
36 1874
37 1631
38 1506
39 1316
40 1144
41 1038
42 933
43 805
44 726
45 640
46 619
47 546
48 484
49 424
50 384
51 344
52 294
53 293
54 303
55 234
56 225
57 191
58 186
59 176
60 180
61 145
62 153
63 115
64 119
65 99
66 94
67 99
68 72
69 94
70 82
71 83
72 78
73 55
74 49
75 53
76 54
77 60
78 36
79 42
80 49
81 51
82 30
83 39
84 36
85 34
86 32
87 31
88 25
89 23
90 34
91 30
92 27
93 34
94 26
95 23
96 18
97 25
98 18
99 20
100 12
101 19
102 13
103 21
104 14
105 13
106 22
107 17
108 15
109 20
110 11
111 15
112 11
113 11
114 9
115 12
116 12
117 8
118 7
119 12
120 12
121 6
122 8
123 2
124 11
125 8
126 9
127 6
128 8
129 7
130 8
131 10
132 6
133 10
134 6
135 5
136 5
137 5
138 4
139 12
140 6
141 4
142 4
143 6
144 3
145 10
146 2
147 6
148 3
149 5
150 4
151 3
152 3
153 2
154 5
155 6
156 3
157 8
158 3
159 3
160 4
161 7
162 2
163 1
164 6
165 4
166 3
167 4
168 2
169 1
170 1
171 2
172 5
173 4
174 4
176 4
177 2
178 1
179 4
180 3
181 3
182 1
183 3
184 2
187 4
189 2
190 2
191 1
192 2
195 2
197 1
198 1
199 4
200 3
201 2
204 1
206 1
208 1
210 2
211 4
213 1
215 2
217 2
221 2
223 1
224 2
226 2
228 1
229 1
230 1
231 1
233 2
234 1
236 2
238 1
239 2
242 3
243 1
244 1
245 1
248 1
249 1
250 1
251 1
252 1
255 1
257 1
258 1
260 2
264 1
267 1
271 1
274 1
276 2
277 4
280 1
286 1
289 1
294 2
299 1
300 1
301 1
307 1
310 2
311 1
315 1
320 1
321 1
323 1
329 1
332 1
334 1
337 1
340 1
343 1
350 1
356 1
363 1
372 1
376 1
378 2
380 1
383 1
390 1
394 2
395 1
396 1
397 1
399 1
405 1
418 1
421 1
423 1
431 1
442 1
452 1
457 2
474 1
486 1
488 1
494 1
506 1
549 1
574 1
606 1
615 1
624 1
635 1
643 1
651 1
657 1
676 1
699 1
753 1
775 1
788 1
821 1
839 1
911 1
966 1
980 1
1130 1
1203 1
1361 1
1420 1
1480 1
1802 1
1905 1
2036 1
2335 1
3130 1
3267 1
3878 1
5822 1
65474 1
[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
...._._.............................._......_..........._.............._
........_..................._.......
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]