File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/3429616c52e679da9f8466279d7ec3/.command.log
Size
3.6 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (tih_rna_sample_00115_23H5VFLT4_s35)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/ccd6cc37027e52583c2a5b03507a2f/tih_rna_sample_00115_23H5VFLT4_s35.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-5b456d70-fab3-4fcc-916c-bc437f411fba/5f/4d32fc1f4ec7fe5ef236279e51ead4/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/3429616c52e679da9f8466279d7ec3/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/3429616c52e679da9f8466279d7ec3/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/dffd2f8ace1807d3a49884ca63fa92/tih_rna_sample_00115_23H5VFLT4_s35.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
IL32--FLYWCH1
starfusion
arriba
COL1A1--SLC45A4
starfusion
EPHX2--PTK2B
starfusion
arriba
PTPRVP--AL691482.3
starfusion
EFNA2--GPX4
starfusion
ZFP36--CAPNS1
starfusion
TVP23C--CDRT4
arriba
PCDHA11--PCDHAC1
arriba
PCDHA11--PCDHAC2
arriba
PCDHA11--PCDHA13
arriba
FBXO27--AC005392.2
arriba
FBXO27--CD177
arriba
PTPRVP--ELF3
arriba

  0%|          | 0/13 [00:00<?, ?it/s]
Processing IL32--FLYWCH1:   0%|          | 0/13 [00:00<?, ?it/s]
Processing IL32--FLYWCH1:   8%|▊         | 1/13 [00:00<00:01,  8.90it/s]
Processing COL1A1--SLC45A4:   8%|▊         | 1/13 [00:00<00:01,  8.90it/s]
Processing COL1A1--SLC45A4:  15%|█▌        | 2/13 [00:00<00:01,  9.21it/s]
Processing EPHX2--PTK2B:  15%|█▌        | 2/13 [00:00<00:01,  9.21it/s]   
Processing EPHX2--PTK2B:  23%|██▎       | 3/13 [00:00<00:01,  9.32it/s]
Processing PTPRVP--AL691482.3:  23%|██▎       | 3/13 [00:00<00:01,  9.32it/s]
Processing PTPRVP--AL691482.3:  31%|███       | 4/13 [00:00<00:00,  9.38it/s]
Processing EFNA2--GPX4:  31%|███       | 4/13 [00:00<00:00,  9.38it/s]       
Processing EFNA2--GPX4:  38%|███▊      | 5/13 [00:00<00:00,  9.41it/s]
Processing ZFP36--CAPNS1:  38%|███▊      | 5/13 [00:00<00:00,  9.41it/s]
Processing ZFP36--CAPNS1:  46%|████▌     | 6/13 [00:00<00:00,  9.43it/s]
Processing TVP23C--CDRT4:  46%|████▌     | 6/13 [00:00<00:00,  9.43it/s]
Processing TVP23C--CDRT4:  54%|█████▍    | 7/13 [00:00<00:00,  9.44it/s]
Processing PCDHA11--PCDHAC1:  54%|█████▍    | 7/13 [00:00<00:00,  9.44it/s]
Processing PCDHA11--PCDHAC1:  62%|██████▏   | 8/13 [00:00<00:00,  9.44it/s]
Processing PCDHA11--PCDHAC2:  62%|██████▏   | 8/13 [00:00<00:00,  9.44it/s]
Processing PCDHA11--PCDHAC2:  69%|██████▉   | 9/13 [00:00<00:00,  9.45it/s]
Processing PCDHA11--PCDHA13:  69%|██████▉   | 9/13 [00:00<00:00,  9.45it/s]
Processing PCDHA11--PCDHA13:  77%|███████▋  | 10/13 [00:01<00:00,  9.46it/s]
Processing FBXO27--AC005392.2:  77%|███████▋  | 10/13 [00:01<00:00,  9.46it/s]
Processing FBXO27--AC005392.2:  85%|████████▍ | 11/13 [00:01<00:00,  9.47it/s]
Processing FBXO27--CD177:  85%|████████▍ | 11/13 [00:01<00:00,  9.47it/s]     
Processing FBXO27--CD177:  92%|█████████▏| 12/13 [00:01<00:00,  9.47it/s]
Processing PTPRVP--ELF3:  92%|█████████▏| 12/13 [00:01<00:00,  9.47it/s] 
Processing PTPRVP--ELF3: 100%|██████████| 13/13 [00:01<00:00,  9.46it/s]
Processing PTPRVP--ELF3: 100%|██████████| 13/13 [00:01<00:00,  9.42it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory