File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/431fe6c25ed042a5c6ee67825f3275/.command.log
Size
2.8 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (tih_rna_sample_00116_23H5VFLT4_s36)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-5b456d70-fab3-4fcc-916c-bc437f411fba/5f/4d32fc1f4ec7fe5ef236279e51ead4/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/431fe6c25ed042a5c6ee67825f3275/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/431fe6c25ed042a5c6ee67825f3275/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/a636e9ac17dcae954d8d08ecbcc868/tih_rna_sample_00116_23H5VFLT4_s36.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/f00a1e7bae6b0505114145f8374776/tih_rna_sample_00116_23H5VFLT4_s36.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
ZNF587--CLASRP
starfusion
arriba
AC013268.1--MALL
starfusion
PCDHA11--PCDHAC2
arriba
PCDHA11--PCDHAC1
arriba
PCDHA11--PCDHA13
arriba
AC092807.3--DDAH1
arriba
TVP23C--CDRT4
arriba
LINC00937--AC083906.5
arriba
LINC00937--AC083906.2
arriba

  0%|          | 0/9 [00:00<?, ?it/s]
Processing ZNF587--CLASRP:   0%|          | 0/9 [00:00<?, ?it/s]
Processing ZNF587--CLASRP:  11%|█         | 1/9 [00:00<00:00,  9.26it/s]
Processing AC013268.1--MALL:  11%|█         | 1/9 [00:00<00:00,  9.26it/s]
Processing AC013268.1--MALL:  22%|██▏       | 2/9 [00:00<00:00,  9.48it/s]
Processing PCDHA11--PCDHAC2:  22%|██▏       | 2/9 [00:00<00:00,  9.48it/s]
Processing PCDHA11--PCDHAC2:  33%|███▎      | 3/9 [00:00<00:00,  9.56it/s]
Processing PCDHA11--PCDHAC1:  33%|███▎      | 3/9 [00:00<00:00,  9.56it/s]
Processing PCDHA11--PCDHAC1:  44%|████▍     | 4/9 [00:00<00:00,  9.59it/s]
Processing PCDHA11--PCDHA13:  44%|████▍     | 4/9 [00:00<00:00,  9.59it/s]
Processing PCDHA11--PCDHA13:  56%|█████▌    | 5/9 [00:00<00:00,  9.59it/s]
Processing AC092807.3--DDAH1:  56%|█████▌    | 5/9 [00:00<00:00,  9.59it/s]
Processing AC092807.3--DDAH1:  67%|██████▋   | 6/9 [00:00<00:00,  9.60it/s]
Processing TVP23C--CDRT4:  67%|██████▋   | 6/9 [00:00<00:00,  9.60it/s]    
Processing TVP23C--CDRT4:  78%|███████▊  | 7/9 [00:00<00:00,  9.62it/s]
Processing LINC00937--AC083906.5:  78%|███████▊  | 7/9 [00:00<00:00,  9.62it/s]
Processing LINC00937--AC083906.5:  89%|████████▉ | 8/9 [00:00<00:00,  9.63it/s]
Processing LINC00937--AC083906.2:  89%|████████▉ | 8/9 [00:00<00:00,  9.63it/s]
Processing LINC00937--AC083906.2: 100%|██████████| 9/9 [00:00<00:00,  9.63it/s]
Processing LINC00937--AC083906.2: 100%|██████████| 9/9 [00:00<00:00,  9.59it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory