File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/0508012c90323831899a05b99898ce/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (GM24385_0001_RNA_0001_23H5VFLT4_s08)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/1611e612de2a72d4d0b522c005bebb/GM24385_0001_RNA_0001_23H5VFLT4_s08.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/8da13709480ffe33bf68c093bb80a4/GM24385_0001_RNA_0001_23H5VFLT4_s08.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/9055d4b0da3d2fb2a1c6cf662c7616/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/0508012c90323831899a05b99898ce/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/0508012c90323831899a05b99898ce/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 252284211
[W::hts_idx_load3] The index file is older than the data file: GM24385_0001_RNA_0001_23H5VFLT4_s08.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	252284211
Known Splicing Events:	249292877
Partial Novel Splicing Events:	1801745
Novel Splicing Events:	1095645
Filtered Splicing Events:	93944

Total splicing  Junctions:	433816
Known Splicing Junctions:	230493
Partial Novel Splicing Junctions:	121429
Novel Splicing Junctions:	81894

===================================================================
Create BED file ...
Create Interact file ...