.command.sh - Workdir - NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:RSEQC_TO_MULTIQC (GM24385_0001_RNA_0001_23H5VFLT4_s32)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/eb8bb1b1c34b4420519fd59d678cfe/.command.sh
Size: 503 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:RSEQC_TO_MULTIQC (GM24385_0001_RNA_0001_23H5VFLT4_s32)
Attempt

Content

#!/bin/bash -euo pipefail
rseqc_to_multiqc.py \
    --bam-stat GM24385_0001_RNA_0001_23H5VFLT4_s32.bam_stat.txt \
    --infer-experiment GM24385_0001_RNA_0001_23H5VFLT4_s32.infer_experiment.txt \
    --sample-id GM24385_0001_RNA_0001_23H5VFLT4_s32 \
    -o GM24385_0001_RNA_0001_23H5VFLT4_s32_rseqc_extra_mqc.tsv

cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:RSEQC_TO_MULTIQC":
    python: $(python3 --version | sed 's/Python //g')
    rseqc_to_multiqc: 1.0.0
END_VERSIONS