AIH curated blacklist: matched 7 fusion rows (breakpoint_ID in qualified set)
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ARRIBA FILTERING SUMMARY
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Total fusions: 106
Pass (FILTER=PASS): 18 (17.0%)
Fail (FILTER=FAIL): 88 (83.0%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 7
All 7 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(medium<high): 17
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 16
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 10
confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 7
confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 6
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 5
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 4
confidence_below_min(medium<high);aih_curated_blacklist: 4
confidence_below_min(low<high): 4
confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 3
confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 2
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 2
aih_curated_blacklist: 1
total_reads_below_min(6.0<8.0): 1
total_reads_below_min(3.0<8.0): 1
Breakdown by confidence:
high: 18 pass, 3 fail (total: 21)
low: 0 pass, 59 fail (total: 59)
medium: 0 pass, 26 fail (total: 26)
Arriba filter: 106 rows -> 18 PASS; wrote V4_0001_RNA_0005_23H5VFLT4_s09.arriba.fusions.filtered.tsv and V4_0001_RNA_0005_23H5VFLT4_s09.arriba.fusions.filtered_pass_only.tsv
Summary written to: V4_0001_RNA_0005_23H5VFLT4_s09.arriba.fusions.filter_summary.txt